New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3701908 =	36 (0.760)	4 (0.090)	4/272	6.7	10.6%	noncoding (3701908/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3701949 =	33 (0.730)					noncoding (3701949/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTCGCGGAAA  >  NC_000913_3_vch_tpiA/3701803‑3702084                                                                                                                                                   |                                                                                                                                        ggtgggtgCCACTGTCGAAGCTGATTGAGTAACGCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTGTCATCCTGATCAACAGCAAACCAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTg                                                                                                                                       <  2:381679/142‑1 (MQ=255)   ttGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCa                                                                                                                                     >  2:473656/1‑149 (MQ=255)    tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAg                                                                                                                                    <  1:709166/149‑1 (MQ=255)        gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCACCTGGGTGCAGGGGc                                                                                                                                >  1:129576/1‑149 (MQ=255)        gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGc                                                                                                                                >  1:129537/1‑149 (MQ=255)         ccACTGATGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGAATTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGTGTGCAGGGGcc                                                                                                                               >  2:714652/1‑149 (MQ=255)                              tAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCACCACCAAAACAAGCTACCACTTGACCGCCGTAGTCTTTTCGCTACGGCTGACACTCGGTGCGGGGACCGAAGCGCCGCCGACAGCggcc                                                                                                          >  2:148358/1‑147 (MQ=255)                                    ggAGCGCATGGCCTCGGTTTTGGGAGTAAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCGGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGaa                                                                                                    <  2:351378/149‑1 (MQ=255)                                         gcATGGCCCCGGTTTGGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGATTGTAGCGCCGACGACAGCGGGCGTTGAAGgcgc                                                                                               <  2:813674/149‑1 (MQ=255)                                            tGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAAc                                                                                            >  2:545767/1‑149 (MQ=255)                                                 ccGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAATCTTTTAGCTGCGGCTGCAACTGGGAGCAGGGGCCGAAGCGCCGACAACACCGGGCGCTGAAGGCGCAGCCcgcc                                                                                       >  2:490670/1‑147 (MQ=255)                                                                 aCGCTGCGGATTTTCATCCTCATCAACCGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTGAAAGGCGCAACCCGGCGCTGGGATCAgcgcgc                                                                       >  2:702989/1‑144 (MQ=255)                                                                          aTTTTCACCCAGATCAACCGCAAAATAAGCTACCAGTTGGCCGCCGTAGTCCTTTAGCTGCGGCTGCAACTGGTTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTCGTAGtt                                                              <  2:386593/149‑1 (MQ=255)                                                                              tCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCCACCGGGTGCAGGGGCCGGAGCGCCGACGACTGAGGGCGTTGAAGGCGCCACCCGGCGGTGGATTCAGTAGGCTTGGTAGtttcgc                                                          >  2:658730/1‑145 (MQ=255)                                                                                  ccTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTg                                                      >  1:558072/1‑149 (MQ=255)                                                                                    tGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAg                                                    >  2:427168/1‑149 (MQ=255)                                                                                     gATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGCAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGCGGGCTCGGTAGTGAACCGcagccc                                                   >  2:447652/1‑144 (MQ=255)                                                                                     gATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGCAGCCCCCACCACCCGGGGGGTGCAGTGGAGTTGGTAGTTCACCGCTGAGc                                                   >  1:368495/1‑149 (MQ=255)                                                                                       tCAACGGCAAAACAAGCTACGAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGCAGCGTCGACGACAGCGGGCGTTGAAGGCGCAACCCGGTGGTGGATTCAGTGGGCTTGGTAGTTCACCGCCGAGCtt                                                 <  2:603107/149‑1 (MQ=255)                                                                                         aaCAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGCTTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGa                                               >  2:253845/1‑149 (MQ=255)                                                                                          aCAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGAt                                              <  2:558072/149‑1 (MQ=255)                                                                                               aaaaCAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCt                                         >  1:732182/1‑149 (MQ=255)                                                                                                    aaGCGAGCAGTTGACCGGCGTAGTCTTTTAGGTGCGGCTGCAACGGGGTGCAGGGGCCGAAGCGACGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGGGGATTCCGTGCGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCgcgg                                    <  2:355566/149‑1 (MQ=255)                                                                                                                 aCCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGt                       >  1:330752/1‑149 (MQ=255)                                                                                                                   cgccgTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTCGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTc                     >  1:358439/1‑149 (MQ=255)                                                                                                                   cgccgTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGAGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACACGGCGGTGGATTCAGTGGGTTTTGTAGTTCACCACTGAGCTTGATGCGCTCGAGCCGATCGTCCGGGTTc                     >  1:465988/1‑149 (MQ=255)                                                                                                                           tgttttAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGCGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCgcgg             <  2:106373/147‑1 (MQ=255)                                                                                                                             ttttAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGACGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCGCGCGGCGATCGTCCGGGGTCAGGCgcggcg           >  1:285555/1‑149 (MQ=255)                                                                                                                                 aGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTcgc       <  1:235480/149‑1 (MQ=255)                                                                                                                                  gCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTCGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTcgcg      >  2:535297/1‑149 (MQ=255)                                                                                                                                    ggCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTGCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTCGCGGa    <  2:37278/148‑1 (MQ=255)                                                                                                                                     gCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGCCGCGGaa   >  2:784059/1‑149 (MQ=255)                                                                                                                                      cGGCTGCAACTGGGTGCAGGGGCCGAAGCGGCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTCGCGGaaa  <  2:628529/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                        GCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGGCGATCGTCCGGGTTCAGGCGCGGCGTCGCGGAAA  >  NC_000913_3_vch_tpiA/3701803‑3702084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.