New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3966835 =	39 (0.820)	4 (0.090)	4/276	6.7	9.8%	noncoding (3966835/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3966855 =	36 (0.780)					noncoding (3966855/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCATGCTGCTGCAGAACATTGCTCAGAG  >  NC_000913_3_vch_tpiA/3966712‑3966997                                                                                                                                                 |                                                                                                                                               gTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAACCGACCGCAACAAAATACTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGaa                                                                                                                                           >  1:112958/1‑149 (MQ=255) gTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACCAAGTTAACTCCGACAAACCTGACGTCGCCGGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGaa                                                                                                                                           <  2:136370/149‑1 (MQ=255)       ttCGCCCGCCGAAAGAAGGTGAACGATATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGCACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGACCGTGGt                                                                                                                                     >  1:764176/1‑149 (MQ=255)          gcccgccGAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAAc                                                                                                                                  <  2:135114/149‑1 (MQ=255)            ccgccgAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACgg                                                                                                                                <  1:653540/149‑1 (MQ=255)               ccgAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAATTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTc                                                                                                                             >  1:667284/1‑149 (MQ=255)                  aaaGAGGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAGATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTAc                                                                                                                          <  1:470134/149‑1 (MQ=255)                     gaagGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTAccgc                                                                                                                       >  2:208137/1‑146 (MQ=255)                             aCGCTATTTTGC‑CTGACTGAAATGTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGTACGCAATCGCTCCTGTTTGTAGGGAACGTGGTAACGGTTCTACTGAAGATTTaa                                                                                                               <  2:393374/149‑1 (MQ=255)                              cGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAAc                                                                                                              <  1:139855/149‑1 (MQ=255)                                   ggttGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTc                                                                                                         <  1:499799/147‑1 (MQ=255)                                     ttGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTTCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGATGATTTAACTGCTcgc                                                                                                       <  2:650156/149‑1 (MQ=255)                                     ttGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTcgc                                                                                                       <  2:559674/149‑1 (MQ=255)                                               tgAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGAt                                                                                              <  1:105903/149‑1 (MQ=255)                                                   aGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAGCAAAATCCTCTTTGAGAAATTAACCCCGCTGCACGCAAACTCTCGTCTCCGTATGGCACGTGGTAACAGTTCTACTGAAGGTTTAACTGCTCGTGTACTGGATCTgg                                                                                          <  1:692175/149‑1 (MQ=255)                                                     ttAACGAATGTAACTTCGACAAACCTGAAAAAGCCCGCAACAAAATCCTCTTTGTGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCa                                                                                        <  2:638720/149‑1 (MQ=255)                                                       aaCGAAGCTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATc                                                                                      <  1:382993/149‑1 (MQ=255)                                                           aaGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTc                                                                                                         <  2:108825/126‑1 (MQ=255)                                                           aaGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTc                                                                                                         >  1:108825/1‑126 (MQ=255)                                                                     cGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTg                                                                        <  1:506283/149‑1 (MQ=255)                                                                              tGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTGTCACCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTg                                                               >  1:624928/1‑149 (MQ=255)                                                                                  accGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCt                                                           <  2:624928/147‑1 (MQ=255)                                                                                        cGCAACCAAATCCTCTTTGAGAACTTAACCCCGGTGCACGCAATCTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGCTCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATtgt                                                     <  1:820979/149‑1 (MQ=255)                                                                                        cGCAACAAAATCCTCTTTGAGAACTTACCCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATtgt                                                     <  1:121721/149‑1 (MQ=255)                                                                                             caaAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCAc                                                <  1:633958/149‑1 (MQ=255)                                                                                                     cctTGGAGAACCTTACCCCGCTTCACGCAAACCCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCGCGCGTACTGGATCTGGCATCTCCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGaaa                                        <  1:71555/148‑1 (MQ=255)                                                                                                         tGAGAACTTAACCCCGCTGCACGCAAACTTTCACCTTCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCg                                    <  2:825100/149‑1 (MQ=255)                                                                                                           agaACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGt                                  <  1:169360/149‑1 (MQ=255)                                                                                                           agaACTTAACCCCGCGGCACGCAAACTCTCGTATGCGTATGGAACGTGGTAACTGTTCTACTGAAGATTTAACTGATCGCGTACTGGTTCTGGCATCACCTATCAGTCCGTGTCAGCGTGGTCTGATTTTGCCCCCGCCGTAAGCCCGt                                  >  2:69597/1‑149 (MQ=255)                                                                                                             aaCTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCTCCGCCGAAAGCCGGTaa                                >  2:345053/1‑149 (MQ=255)                                                                                                                      ccGCTGCACCGAAACTCTCGTCGGCGTATGGAAGGTGTTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCAtgct                       <  2:35855/149‑1 (MQ=255)                                                                                                                       cGCTGCACGCAAACTCTCGGCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCAtgctg                      <  1:539946/149‑1 (MQ=255)                                                                                                                         cTGCACGCAACCTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCAtgctgct                    <  1:92348/149‑1 (MQ=255)                                                                                                                                          tCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCATGCTGCTGCAGAACATTGCTCaga   >  1:57530/1‑149 (MQ=255)                                                                                                                                          tCTGCGTAGGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTTGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCATGCTGCTGCAGAACATTGCTCaga   <  1:197560/149‑1 (MQ=255)                                                                                                                                           cTGCGTATGGAACGTGGTAACGGTTCTACTGAATATTTAACTGCTCGCTTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCATGCTGCTGCAGAACATTGCTCagag  <  2:54068/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                               GTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTG‑CTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTACTGAAGATTTAACTGCTCGCGTACTGGATCTGGCATCACCTATCGGTCGTGGTCAGCGTGGTCTGATTGTGGCACCGCCGAAAGCCGGTAAAACCATGCTGCTGCAGAACATTGCTCAGAG  >  NC_000913_3_vch_tpiA/3966712‑3966997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.