New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3993706 =	45 (0.760)	6 (0.110)	5/264	7.7	12.0%	noncoding (3993706/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3993732 =	45 (0.800)					noncoding (3993732/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTCAACCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCA  >  NC_000913_3_vch_tpiA/3993558‑3993842                                                                                                                                                     |                                                                                                                                          cTTCAACCTGCCGCAGTTCTATCAGAATAAGCATGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGt                                                                                                                                           >  1:779291/1‑149 (MQ=255)  ttCAACCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTg                                                                                                                                          >  2:627901/1‑149 (MQ=255)     aaCCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCg                                                                                                                                       >  1:317530/1‑149 (MQ=255)      aCCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCgg                                                                                                                                      >  1:570400/1‑149 (MQ=255)               aGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAgg                                                                                                                             <  2:474328/149‑1 (MQ=255)               aGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAgg                                                                                                                             <  2:321363/149‑1 (MQ=255)                    tATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTAt                                                                                                                        >  1:398456/1‑149 (MQ=255)                       cAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCg                                                                                                                     <  2:317530/149‑1 (MQ=255)                          aTTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCa                                                                                                                  >  2:174213/1‑149 (MQ=255)                               gAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCaa                                                                                                             <  1:969440/149‑1 (MQ=255)                                  ggTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCt                                                                                                          <  1:174213/149‑1 (MQ=255)                                      gagggTCGTGAACAGGTGATTCCGTTCCGAACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGc                                                                                                      <  1:548679/146‑1 (MQ=255)                                          gTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGc                                                                                                                                 <  2:874146/118‑1 (MQ=255)                                          gTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGc                                                                                                                                 >  1:874146/1‑118 (MQ=255)                                            cGTGAAAAAGTGATTCCATTCCGCAAAAAATCTATCGACAACACGCCGCCTGCCAAACAGGATCACAATACGCCGCTATAACAGCAATATTATTCGTGATGAACCTGCCGGAAACCGAGGCTTATCCGGCATGCAATCTTAGCGGAAac                                                                                                <  2:25897/149‑1 (MQ=255)                                                aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTACCATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTGGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGGAATCTTAGCGGAAactgac                                                                                            <  2:756302/149‑1 (MQ=255)                                                aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAgctgac                                                                                            >  1:888324/1‑149 (MQ=255)                                                aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                            <  1:794172/149‑1 (MQ=255)                                                  cAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCATGCCAAGCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgactg                                                                                          >  1:514553/1‑149 (MQ=255)                                                   aGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGt                                                                                         >  1:966400/1‑149 (MQ=255)                                                        aTTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGAACACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCAc                                                                                    >  2:210327/1‑149 (MQ=255)                                                          tccgttccgCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCAccc                                                                                  >  1:169723/1‑149 (MQ=255)                                                              ttccgCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCct                                                                              <  2:398456/149‑1 (MQ=255)                                                                     caAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGt                                                                       >  2:755064/1‑149 (MQ=255)                                                                                 gTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCATTCATAGCGGAACATGACTGTTTGACCCGCCTGCTGCGTCGCCGCCTGTTc                                                           >  1:765115/1‑149 (MQ=255)                                                                                 gTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCTGCCTGCTTCGTCGCCGCCTGTTc                                                           >  1:549655/1‑149 (MQ=255)                                                                                      aTGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGGGATGAACGTGCCGGAAAGCGAGGCTTATCAGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCCCCTGCTGCGTCTCCGCCTGTCCGAGCa                                                      >  2:374055/1‑149 (MQ=255)                                                                                              tGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAg                                             >  2:92498/1‑149 (MQ=255)                                                                                              tGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAg                                             >  2:865586/1‑149 (MQ=255)                                                                                                gcAATCAGGATCACGATACGCCGATATTACAGCAATCTTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGaa                                           <  2:514553/148‑1 (MQ=255)                                                                                                ccAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGaa                                           <  1:865586/149‑1 (MQ=255)                                                                                                  aaTCAGGATCCCGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAgg                                         <  1:576352/149‑1 (MQ=255)                                                                                                    tCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGtt                                       >  1:37740/1‑149 (MQ=255)                                                                                                       ggATCACGATACGCCGTTTTGACGGCAAGATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcg                                    <  2:1043203/149‑1 (MQ=255)                                                                                                       ggATCACGATACGCCGCTATTACAGCAATATTTTTCGTTTTTTATGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcg                                    >  2:900453/1‑149 (MQ=255)                                                                                                        gATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcgc                                   <  1:781778/149‑1 (MQ=255)                                                                                                                   gccgcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                            <  1:35440/82‑1 (MQ=255)                                                                                                                   gccgcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                            >  2:35440/1‑82 (MQ=255)                                                                                                                      gcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGACGGTTTCGCCGCTGCGATCACaa                     >  2:923651/1‑149 (MQ=255)                                                                                                                        tATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCA‑CATAGCTCCAGAAGGTTTCGCCGCTGCGATCACAAAt                   <  1:1032363/149‑1 (MQ=255)                                                                                                                                cAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCAt           >  2:965971/1‑149 (MQ=255)                                                                                                                                    atTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGCCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGcc       >  2:748602/1‑149 (MQ=255)                                                                                                                                     tttttCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGCAGGTTTCGCCGCTGCGATCACACGTCCAGTCAGCGCCt      <  2:966400/149‑1 (MQ=255)                                                                                                                                        ttCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTc   <  1:717372/149‑1 (MQ=255)                                                                                                                                         tCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCa  <  1:210327/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                          CTTCAACCTGCCGCAGTTCTATCAGATTGTGAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCA  >  NC_000913_3_vch_tpiA/3993558‑3993842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.