New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 225281NA (NA)6 (0.110) 6/268 7.3 NA noncoding (225281/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA = 225293 NA (NA)noncoding (225293/4641682 nt) repeat_region repeat region
Rejected: Coverage evenness skew score above cutoff.

TAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTG  >  NC_000913_3_vch_tpiA/225206‑225433
                                                                                       |                                                                                                                                            
tacgtagCCTAACCGTCGGGACGGCGCCTACCCCTTTGTGATTCATGACTGGGGAGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTCCCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCtg                                                                                 <  2:535763/146‑1 (MQ=1)
       ctaaaCCTTCGGGAGGCCGATTACCACTTTGTGATTCATGTCTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGAGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGaaaa                                                                          <  1:74060/146‑1 (MQ=1)
                                                                               ggaaaCGTGCGGTTGGATCACCTCCGTACCTGAAAGAAGCCGAGTTTGCAGTGCTCACACAGACTGTCGGATGAAAATGAGCAGTAAAACCTCTACCGGCTTGTAGCTCAGGTGGTTAGAGCGGACCCCTGATAAGGGTGAGGTCggtg  <  2:584648/146‑1 (MQ=1)
                                                                                       |                                                                                                                                            
TAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTG  >  NC_000913_3_vch_tpiA/225206‑225433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.