New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 354733	NA (NA)	4 (0.110)	4/270	5.0	NA	noncoding (135/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	= 354765	NA (NA)					noncoding (167/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCG  >  NC_000913_3_vch_tpiA/354590‑354880                                                                                                                                                |                                                                                                                                                    tAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCAGAGGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGCTAAAGCGCTCGCGTGGCATCCGGCACCAAGCCCAGATGCCTg                                                                                                                                                >  1:96109/1‑149 (MQ=38)  aGGGTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGa                                                                                                                                               <  2:627185/149‑1 (MQ=255)   ggTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCCGATGCCTGAt                                                                                                                                              >  2:212746/1‑149 (MQ=255)   ggTTATTGTCGGATGCGTAGCGCGGTGCATCCGGCACTGAGTGCCGACGCCTGATGCGACGCTGACGCGTTTTATCATGTCTACGGACCTGAACCGTAGGTCGGACAAGGCGCTCGCGTCGCAGCCGACACCATGCTCAGATGCCTGAt                                                                                                                                              <  1:513949/149‑1 (MQ=255)    gTTCTTGTCGGATGCGTCGCGCGGTGCCTCCGGCCCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATg                                                                                                                                             <  1:1037/149‑1 (MQ=255)        ttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc                                                                                                                                         >  1:106209/1‑149 (MQ=255)        ttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGAACAGGCGCTCGCGTCGCATCCGACACCATGCTCAGAGGCCTGATGCgcc                                                                                                                                         >  1:106804/1‑147 (MQ=255)           tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACACGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACCCCCTGCTCATATGCCTCATGCggggct                                                                                                                                      >  2:371362/1‑144 (MQ=39)              gATGCGGCGCGCGGTGCGTCCGGCACTTTGTGCCGATGTCTGATGTGACGCTGCCGCGTTTTATCATGCCGACGGACCTGAGCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCTACACCATGCTCAGTTGCCTGATGCGACGCTGAc                                                                                                                                   <  2:569575/149‑1 (MQ=255)               aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCCGATGCCTGATGCGACGCTGAcg                                                                                                                                  >  2:442748/1‑149 (MQ=255)                    tCGCGCGGTGCATCCGGGACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGTGCTCGCGTCGCATCCGACACCATGCGCCGATGCCTGATGCTACGCTGAcgcgctt                                                                                                                             >  2:211959/1‑146 (MQ=38)                       cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGt                                                                                                                               <  2:26391/144‑1 (MQ=255)                       cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGt                                                                                                                               >  1:26391/1‑144 (MQ=255)                        gcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                                         <  2:673096/149‑1 (MQ=255)                           gTGCATCCGGCACTGTGTGCCGACGCCTGAGGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGGCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAgg                                                                                                                      <  1:76594/149‑1 (MQ=255)                                  cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCTCCTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                                                                               >  1:157425/1‑149 (MQ=255)                                        tgtgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCCCTGtt                                                                                                         >  1:654536/1‑149 (MQ=255)                                          tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGa                                                                                                                                          >  1:198093/1‑114 (MQ=255)                                          tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGa                                                                                                                                          <  2:198093/114‑1 (MQ=255)                                          tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                       >  2:631513/1‑149 (MQ=255)                                          tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                       <  1:252617/149‑1 (MQ=255)                                          tgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                                                                       <  2:11258/149‑1 (MQ=255)                                            tgCCGACGTCTGGTGCGACGCGGACGCGTTTTATCATGCCTACGGACCTGAACAGCAGGTCGGATAAGGCGCTCGCGTCGCATCCGATACCATGCTTATATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                                                                     <  1:135176/149‑1 (MQ=38)                                                              cGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGATCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcccc                                                                                   >  1:446063/1‑149 (MQ=255)                                                                       gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCttttt                                                                          >  1:423004/1‑149 (MQ=255)                                                                        ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                                                                         >  1:41565/1‑149 (MQ=255)                                                                               aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTAGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTAAACCGATAATTTTTCCAACACCTTTTTGCCCtcat                                                                  >  2:5549/1‑149 (MQ=38)                                                                                 gCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACccattc                                                                >  2:104843/1‑149 (MQ=255)                                                                                     aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                                                      <  1:366930/139‑1 (MQ=255)                                                                                     aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                                                      >  2:366930/1‑139 (MQ=255)                                                                                       ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaa                                                          >  1:340706/1‑149 (MQ=255)                                                                                          ccTGAATCGGAGGTCGTATAAGGCGCTAGCGTCGCATCCGATACTCTGCTCAGATGCCTGATGCGACGCTGACGCGGCTTATCAGGGCGACCCACGTTTTTGACACCGATGATTTTTCCCCCACCTTTTTGCACTCATTCATATaaaaa                                                       <  2:482657/149‑1 (MQ=37)                                                                                            tGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCGCAGATGCCTGATGCGAGGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCTTTCATATAAAAAat                                                     >  1:434062/1‑149 (MQ=255)                                                                                               aCCGTAGGTCGGATAAGGCGCGCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTCATCAGGCCTACCCACTGTGTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatata                                                  <  2:630564/149‑1 (MQ=255)                                                                                                           aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaa                                      >  1:382439/1‑149 (MQ=255)                                                                                                           aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaa                                      >  2:491602/1‑149 (MQ=255)                                                                                                                gcgcTCGCGTCGTATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCATACCCACGGTTTTTACACCGATAATTGGTCCCCCACCGCCCGCCACCCAGTCATATAAAAAATATATTTCCCCCCCAAAGCGa                                 >  2:313772/1‑149 (MQ=25)                                                                                                                 cgcTCGCGTCGTATCCGACACCATGCTCAGATGCCTGATGCGACGATGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt                                <  1:313772/149‑1 (MQ=255)                                                                                                                    gcgccgcGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGc                             <  2:337622/143‑1 (MQ=255)                                                                                                                            cATCCGACATCATGCTCAGATGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATc                     <  2:166637/149‑1 (MQ=255)                                                                                                                              tCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCtt                   <  2:382439/149‑1 (MQ=255)                                                                                                                              tCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCtt                   >  1:237564/1‑149 (MQ=255)                                                                                                                               tcGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAAACAGTGTTCCCACGAAAACGATTGCTTTTTATCTTc                  <  2:146240/148‑1 (MQ=38)                                                                                                                               ccGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTc                  <  2:276152/149‑1 (MQ=255)                                                                                                                                cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                 <  1:631513/149‑1 (MQ=255)                                                                                                                                cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATAAATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                 <  1:20313/149‑1 (MQ=255)                                                                                                                                cGACACCAAGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa                 <  2:306857/149‑1 (MQ=255)                                                                                                                                 gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAg                >  2:258469/1‑149 (MQ=255)                                                                                                                                       aTGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACACACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAAt          >  1:607666/1‑149 (MQ=255)                                                                                                                                            cAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATATTCAGATGAATAGAAt     >  1:172548/1‑149 (MQ=255)                                                                                                                                               aTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTAGACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATgcg  <  2:423004/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    TAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCG  >  NC_000913_3_vch_tpiA/354590‑354880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.