New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2790661 =	25 (0.650)	4 (0.110)	4/276	5.1	14.0%	noncoding (2790661/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2790677 =	25 (0.670)					noncoding (2790677/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTTTCAAACGCGAAGGCTATC  >  NC_000913_3_vch_tpiA/2790530‑2790819                                                                                                                                                    |                                                                                                                                               aCGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGc                                                                                                                                               >  1:465657/1‑149 (MQ=255)  cGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCa                                                                                                                                              >  2:641737/1‑149 (MQ=255)       ccGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAAcc                                                                                                                                         >  1:92545/1‑149 (MQ=255)                     aaTATGAAGCGTCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAaccac                                                                                                                           <  2:497029/149‑1 (MQ=255)                                          ttAGCTGTGCCGGGCTGATGGCTGACCCGCTGGTGAAAATGCGCGGACTCGAACCGGGCTTTATCATCTGCCCTTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGAc                                                                                                      <  1:598507/149‑1 (MQ=255)                                              cggTTCCGGGCTGATGGCTCACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTCCCCGTTCCATGGCGAGTATTTCCACCTTGCGCCGGAGCACAACCAGATTGTTAACCACCTCATTTCCACCATTCGCGCCCCgg                                                                                                  >  2:225414/3‑149 (MQ=255)                                                 ttCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCaa                                                                                               <  1:81947/149‑1 (MQ=255)                                                                tGAACGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGGCCCGGCAATGCCGTTTTTggggg                                                                                >  2:384762/1‑147 (MQ=255)                                                                     ggCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCAt                                                                           <  1:518362/149‑1 (MQ=255)                                                                                  gCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGa                                                              >  1:373706/1‑149 (MQ=255)                                                                                   cccggtttCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTACCCACCTGCTTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGAt                                                             <  1:224940/142‑1 (MQ=255)                                                                                   cTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGAt                                                             <  1:399248/149‑1 (MQ=255)                                                                                   cTCGGACTCGAACCAGGCTTTATCAGCCGCCCGACCCGTGGCTAGCATTCCTGCGGGGCGCCGTGGCATAAGCAGTTTGGTAACGACCTGAGTTACCCCAGTCCCTGGCCGGCAATGCCGTGTTTGGGCGTTCATCTCACCCGCATGAt                                                             <  2:229423/149‑1 (MQ=255)                                                                                                cGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTAcccc                                                                                                               >  2:672986/1‑86 (MQ=255)                                                                                                cGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTAcccc                                                                                                               <  1:672986/86‑1 (MQ=255)                                                                                                   gCTTTATCATCTGCCCGTTCCGTGGCGAGTATTGCCGCCGTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCACTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCCCCCGCATGATCGACGGCAGCGTGAcc                                             <  1:234244/149‑1 (MQ=255)                                                                                                     tttATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGTGTGACCGt                                           >  1:187914/1‑149 (MQ=255)                                                                                                        atcatcTGCCCGGTCCGTGGCGTGTAGTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCgg                                        <  1:69212/149‑1 (MQ=255)                                                                                                            tcTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCa                                    >  2:297845/1‑149 (MQ=255)                                                                                                                   gTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCgg                             <  1:203741/149‑1 (MQ=255)                                                                                                                       cGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTGCATCTCCCCCGCATGCTCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCt                         >  1:148003/1‑149 (MQ=255)                                                                                                                        gTGGGGAGTATTTCCGCCTCGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTg                        <  2:204747/149‑1 (MQ=255)                                                                                                                            cGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCGGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCtt                    <  2:637574/149‑1 (MQ=255)                                                                                                                                              gcCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTTTCAAACGCGAAGGCTATc  <  2:669791/149‑1 (MQ=255)                                                                                                                                              gcCGAAGCATAACCAGATTGTTAACCACCTGATTTACCCCTCTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTTTCAAACGCGAAGGCTATc  <  2:465657/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               ACGTACCCGTCAGGGCGGCGAATATGAAGCATCAACGCTGATTAGCTGTTCCGGGCTGATGGCTGACCGGCTGGTGAAAATGCTCGGACTCGAACCGGGCTTTATCATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCACCTGATTTACCCCATTCCCGACCCGGCAATGCCGTTTTTGGGCGTTCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGGGCCAAACGCGGTGCTGGCTTTCAAACGCGAAGGCTATC  >  NC_000913_3_vch_tpiA/2790530‑2790819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.