New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 2897751	30 (0.780)	4 (0.110)	4/276	5.1	12.5%	noncoding (2897751/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 2897791	27 (0.730)					noncoding (2897791/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAAC  >  NC_000913_3_vch_tpiA/2897645‑2897932                                                                                                                                                   |                                                                                                                                              aCCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTgcg                                                                                                                                             >  1:232517/1‑149 (MQ=255)  cccAAGAACTAGGCTGCTAAGGATCAAACCAAGGAGCGCCGAGCCGCCGATAATTCCCGCCATAAACGGTGTCAGTTGCATGGCGGGCGGAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTgcgc                                                                                                                                            <  1:266218/149‑1 (MQ=255)        aaCCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAg                                                                                                                                      >  2:157956/1‑149 (MQ=255)            aggcgcccAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATCCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAg                                                                                                                                  <  2:309018/143‑1 (MQ=255)             gacTGCCAGGGAACAACCCAGGGAGCGGGGAGCCGCCGTGCATGCCCGCCATACACGGCGTCAGTGCCATGTCGGGCGTAAGCTGAATAATGGTTTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAgc                                                                                                                                 <  2:504122/147‑1 (MQ=255)                  ccAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGTCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCgcagc                                                                                                                            <  2:588381/149‑1 (MQ=255)                          cAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGc                                                                                                                    >  1:229306/1‑149 (MQ=255)                                              cgccgATCATCCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGt                                                                                                <  1:45869/149‑1 (MQ=255)                                                     aaTTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTAAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAatcat                                                                                         <  2:551315/148‑1 (MQ=255)                                                          ccGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCAtt                                                                                    >  1:340620/1‑149 (MQ=255)                                                               aTAAACGGGGCCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCAc                                                                               <  1:221620/149‑1 (MQ=255)                                                                          cAGTTGCATGGCGGGCGTAAGCTGAATAAGGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAgtgt                                                                    <  1:385577/149‑1 (MQ=255)                                                                                 aTGGAGGGCGGAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCGGAAAGTGAGCGCAGCAATTCGGCAGTGAAAACGGTTAAGCGGGAAATCATCCATTCGCCCCGGTGAAGTGTTCATCtt                                                             >  2:621346/1‑149 (MQ=255)                                                                                  tGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACGTAACCGTCGGTCAGGTGTGAGCCGAAAGTTAGCGCAGCAATGCGGCAGTGAAAAAGGTTAAGCGGTAAAGCATCCATTCGCACCGGTGAAGTGTTCATCttt                                                            >  2:491768/1‑149 (MQ=255)                                                                                    gcgcacgTAATCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGGGTGCGCCGAACGTGAGCGCAGCAATGCGACAGTAAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGCGCTCATCTTTAc                                                          >  2:347379/6‑149 (MQ=255)                                                                                         cgTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCtt                                                     <  1:157956/149‑1 (MQ=255)                                                                                               cTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGt                                               >  1:472734/1‑149 (MQ=255)                                                                                               cTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGt                                               >  1:279078/1‑149 (MQ=255)                                                                                                 gAATAATGGCGTAACCCATGACGCCGAGAACATAACCGTCGGTCAGGTGGGCGCCGAAGGGAAACACAGAAACGCTGCAGTGAACACGGTTACACGGTAACACATACATGCCCCCCGGTGAATCGTTCATCTTTACCCCCGCACTGTcc                                             >  2:371958/1‑149 (MQ=255)                                                                                                                      cGCCGAGAACATAACCGTCGGGCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCTCCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCg                        >  1:561571/1‑149 (MQ=255)                                                                                                                         cGAGAACATCACCGTCGGTAAGGTGTGCGAACAAAGTGAGAGCAAAAATGCGGCAGTGAAAACGGTTAAGCTGTGAATCATCAATTCGCCCCGGTGAAGTATTCGTATTTCCACCATTATTGCGCTGTAATAAGAACGACTCCGCGCCt                     >  2:156829/1‑149 (MQ=255)                                                                                                                             ccgatctccGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTgaga                 <  2:666389/142‑1 (MQ=255)                                                                                                                               cATAACCGGCGGTCAGGTGTGCGCCGAACGTGAGCGCCGCAATGCGGCAGTGAAAACTGTGAAGCGGTAAAGGAGCCATTCGCGCCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAg               <  2:229306/149‑1 (MQ=255)                                                                                                                                aTAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTGCTCTTGGATTGTCGGGAATTAAGAACGGCTTGTGGCCTGAGAAGc              >  1:463766/1‑149 (MQ=255)                                                                                                                                aTAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTGCGGTACTAAGAACGCCTTCTCGCCTGAGAAGc              >  2:107901/1‑149 (MQ=255)                                                                                                                                 tAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGcc             <  1:250881/149‑1 (MQ=255)                                                                                                                                     cGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCACCATGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGaaagatcgg         >  1:666389/1‑142 (MQ=255)                                                                                                                                       tCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAACAg       >  1:123651/1‑149 (MQ=255)                                                                                                                                            cAGGTGTGCGACGAAAGTGAGCGCAGCAATGCGGCAGGGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAAc  <  1:32263/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              ACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAAC  >  NC_000913_3_vch_tpiA/2897645‑2897932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.