Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	1978503–1979270	1979278	9–776	43 [0]	[1] 44	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 1978502	0 (0.000)	43 (1.190)	38/268	0.1	100%	noncoding (1978502/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1979279 =	0 (0.000)					noncoding (1979279/4641682 nt)	repeat_region	repeat region

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913_3_vch_tpiA/1979139‑1979417                                                                                                                                             |                                                                                                                                           gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcggcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                    >  2:343491‑M2/141‑149 (MQ=255)  tctttccacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                                                                   >  2:162922‑M2/140‑149 (MQ=255)     ttacacttatctaagattttttttattttttcccaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgattcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                >  2:45089‑M2/137‑149 (MQ=255)             atctaagattgttcgtaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattaattaacataaatgTATAAGTCATACttttgtttt                                                                                                                        <  2:317571‑M2/21‑1 (MQ=255)              tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                       >  1:450166‑M2/128‑149 (MQ=255)              tctaagatttttcctaaatcgacgcaactgtacccgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCTAAGTAATAattttgttttt                                                                                                                       >  2:153658‑M2/128‑148 (MQ=255)                taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                     >  1:530185‑M2/126‑149 (MQ=255)                         tcataaatagacgaaacagtactcgtcactagacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                            <  2:303184‑M2/33‑1 (MQ=255)                           ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatatatgTATAAGTCTTACTTTTGTTTTGGGTGTCTTTCAAt                                                                                                          >  2:464882‑M2/115‑149 (MQ=255)                              aatcgacgcaactgtactcgtcacttcacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttgacataaacgTATAAGTCATACTTTTGTTATGGGTGTATTTCAATCTg                                                                                                       >  1:513443‑M2/112‑149 (MQ=255)                                   acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaattTATAAGTCATACTTTTGTTTTCGGTGTATTTCAATCTGTaaaa                                                                                                  >  1:74852‑M2/107‑149 (MQ=255)                                     gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                <  1:547494‑M2/45‑1 (MQ=255)                                         ctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                            <  1:573876‑M2/49‑1 (MQ=255)                                          tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATGTGTTAAAAAGtttt                                                                                           >  1:6904‑M2/100‑149 (MQ=255)                                               tcgtcactacacgcacatacaacggagggcggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                      <  1:236095‑M2/55‑1 (MQ=255)                                                cgtcactacacgcacatacaacggaggggttctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                     <  1:595515‑M2/56‑1 (MQ=255)                                                     ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                <  1:349645‑M2/61‑1 (MQ=255)                                                        cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                             >  1:439762‑M2/86‑149 (MQ=255)                                                                tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                     <  1:464882‑M2/72‑1 (MQ=255)                                                                tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                     >  1:365788‑M2/78‑149 (MQ=255)                                                                 acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTGCATCGTGTGAAAGGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    <  1:162922‑M2/73‑1 (MQ=255)                                                                   aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCCAGCAAGCAAAAATGa                                                                  >  2:520008‑M2/75‑149 (MQ=255)                                                                     cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                <  2:530185‑M2/77‑1 (MQ=255)                                                                      ggaggggggctccgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTAGCTCCGCTAGCCAGCAAAAATgaaat                                                               >  1:415795‑M2/72‑148 (MQ=255)                                                                       gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                              <  1:343227‑M2/79‑1 (MQ=255)                                                                        aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                             <  1:77037‑M2/80‑1 (MQ=255)                                                                        aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                             <  1:581167‑M2/80‑1 (MQ=255)                                                                        aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                             <  1:45089‑M2/80‑1 (MQ=255)                                                                            gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                         >  2:321064‑M2/66‑149 (MQ=255)                                                                             ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                        <  1:343491‑M2/85‑1 (MQ=255)                                                                                   gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                  >  1:336989‑M2/59‑149 (MQ=255)                                                                                        tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                      <  2:309602‑M2/55‑1 (MQ=255)                                                                                        tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                      >  1:309602‑M2/54‑108 (MQ=255)                                                                                          aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGt                                                                                              <  1:589139‑M2/47‑1 (MQ=255)                                                                                          aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGt                                                                                              >  2:589139‑M2/52‑98 (MQ=255)                                                                                             aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                          <  1:630126‑M2/35‑1 (MQ=255)                                                                                             aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                          >  2:630126‑M2/49‑83 (MQ=255)                                                                                                    gatgcagatcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  2:660613‑M2/108‑1 (MQ=255)                                                                                                     atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTTTTACTTTATCAAGCAAAAATGAATCAGGATGAATCGTAATGGGatgttgcggatgg                                >  2:625170‑M2/41‑144 (MQ=255)                                                                                                     atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                <  1:470862‑M2/109‑1 (MQ=255)                                                                                                              acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                       >  2:16927‑M2/32‑149 (MQ=255)                                                                                                                                   aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  >  2:73799‑M2/11‑149 (MQ=255)                                                                                                                                   aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGAAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  >  2:73820‑M2/11‑149 (MQ=255)                                                                                                                                   aacATAAATGTATAAGTCATATTTTGCTTTTGTGTGTATTTCAATCTGTTAAAAAGTCTTTCGCTACGCTAGCAAGAAAAAATCAACCCGCCATAATCCACATGTGATGTTGCGCACATTCAAAATAACTCACCGTAAATAATCATCTg  <  2:499969/147‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913_3_vch_tpiA/1979139‑1979417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑