New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 20248698 (0.050)230 (0.130) 79/252 52.0 67.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 125 (0.070)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 302 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑A‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618
                                                                                                                           |                                                                                                                                       
aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAATCCC‑‑attaa‑‑‑a‑‑aatt‑aaaa                                                                                                                          >  1:3341020/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAATCCCC‑‑ttaa‑‑‑a‑‑aatt‑aaaaa                                                                                                                         >  2:3466995/1‑128 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCAC‑‑ttaa‑‑‑a‑‑aatt‑aaaaa                                                                                                                         >  2:3210644/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTGATTATCTTC‑ACAAAT‑AAAAAAAAAACAATCACC‑‑Taaa‑‑‑a‑‑aaat‑aaaaaa                                                                                                                        >  1:1966243/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCACTTGATCTATTTTTTTATTTTTTTATCTTA‑AAAAAT‑AAAAAAAAAACAAT‑‑ACAATAAA‑‑‑A‑‑AAAT‑aaaaaaaa                                                                                                                      >  2:1385024/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATAACATT‑‑‑A‑‑‑A‑‑AAAT‑aaaaaaaa‑aa                                                                                                                   >  2:1214077/1‑128 (MQ=255)
        ttttAAGGTTAATTAAAATAACATAAACTTTATAATTCTTAAAATGTTTATACTCTTTATCTATTTTTTTTTTTTTTTATATTC‑AAAAATAAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aa                                                                                                                   <  2:3318288/126‑1 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTATATCCTCGTGATCTAATTATTTATATAATAATCATC‑ACAAAA‑AAAAAAAAAAACAAAACCaaaaaa‑‑‑a‑‑aaaa‑aaaaaaaa‑aaa                                                                                                                  >  2:504916/1‑128 (MQ=255)
           tAAGGTTAATTAAAATAAAATAAACTTAATAATTATTATAATATAGATCATCTTTATATAATTATTTATTTTTTTATCTTA‑ACAAAT‑AAAAAAAAAACAAT‑‑AAAAATAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                               >  2:1076018/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAAACAC‑‑‑AAA‑‑‑A‑‑AAAT‑taaaaaaa‑aaaaaaaa                                                                                                             >  2:487486/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                             >  2:3544626/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaa                                                                                                            >  2:3139584/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAA‑‑‑A‑‑AAAT‑taaaaaaa‑aaaaaaaaaa                                                                                                           >  2:2533912/1‑128 (MQ=255)
               ttttattaaAAAAATATAAACTTATAAATTTTTAAAATTTATAAACTATTTATATATTTTTTTATTTTTTATTATAA‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                           <  1:2489718/124‑1 (MQ=255)
               gTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTA‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                           <  1:3039608/128‑1 (MQ=255)
                ttatttaaAATCCTATAAA‑TTTATAATTATTATAATTTATATACAAGTTATCTAATTTTTAATTTTTTTATATTC‑ACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaac                                                                                                         <  1:2381534/128‑2 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTAACTTC‑ACAAAA‑AAAAAAAAAAAAAACC‑‑‑AAAAA‑‑‑A‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                        >  2:1511183/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                         >  2:2232916/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAAAACAC‑‑ATAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                        >  1:3532206/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAAAACACCTAAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaa                                                                                                          >  2:3684639/1‑128 (MQ=255)
                  aaataaaataaaaTAAACTTTATAATTATTATAATTTATCTACTATGGATATTTTTTTTTATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                        <  1:3028659/125‑1 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAT‑‑ACAATTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                       >  1:3700626/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAA‑AAAAAAAAAATAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                        >  2:204118/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATACTTATAATGTAGATCAACTAGATCTAATTTTATATTTATTAAACTTC‑ACAAAA‑AAAAAAAAAAAAAACCC‑‑‑AAAA‑‑‑A‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaaaaa                                                                                                      >  2:1716103/1‑126 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCATTAAAA‑‑‑A‑‑Taaa‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                        >  2:3098075/1‑128 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaa                                                                                                      >  2:888188/1‑126 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                   >  2:3660687/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATACTCTAGATCTATTTTTTTATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAT‑‑AAAATAAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                   >  2:2658250/1‑123 (MQ=255)
                       aaaTACAAAAAACTTAATAATTATTAAAATTTATATCATAGTTTTATATTTTTTTATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAA‑‑CCC‑ATTAA‑‑‑A‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTaaaaa                                                                                                 <  1:3187512/128‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑‑A‑‑AATT‑Aaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                  >  1:3296566/1‑128 (MQ=255)
                         aTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaataa                                                                                                 >  2:798888/1‑121 (MQ=255)
                          taaaaTAAAATTAAAAATTATTATAATTTATATAATTGTTATATATTTTTTTATTTGTTTATATTA‑AAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAaaac                                                                                                <  1:262821/124‑1 (MQ=255)
                           aaaaTAAAAATAATAATTATAATAATTTAGATAATATTTATATATTTTTTTATTTTTTTATATTCAAAAAAA‑AAAAAAAAAACAAAACCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAATCTAAaaaca                                                                                               <  1:626488/125‑1 (MQ=255)
                            acaaaaaaTTAATAAATATTATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTA‑AAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAaaacaaa                                                                                             <  1:1355799/124‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATTTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTAAAA‑‑‑A‑‑TTAA‑AAAAaaaa‑aaaaaaacaaaaaaaaaaaaca                                                                                               >  2:3361469/1‑128 (MQ=255)
                                  aattAATAATTATTATAATTTATATCATCTTGATCTATTTTTTTATTTGTTTATATTA‑AAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                        <  1:3482799/126‑1 (MQ=255)
                                   atttataatTTTTTTAATGTTTATCACTGGGATCTATTTTTTTTATTTTTTATATTC‑AAAAAT‑AAAAAAAAAAAAAATCCCCTTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                         <  2:3630625/124‑1 (MQ=255)
                                      aataaataTTATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTC‑AAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑‑‑‑TAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                <  1:3370337/128‑1 (MQ=255)
                                       ataatTATTATAATTTATATCCAGGTGATCTATTTTTTTATTTTTTTATCTTC‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                   <  1:3642137/128‑1 (MQ=255)
                                         aaattttAAAATGTACATCCACGTTTTATATTTTTTTATTTGTTTATATTA‑ACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                 <  1:2906640/123‑1 (MQ=255)
                                            tattATAAATTATATCATCGTTATCTATTTTTTTATTTTTTTATATTA‑AAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                             <  1:310762/126‑1 (MQ=255)
                                              ttATAATTTATATACTCTTTTTTTATTTTTTTTTTTTTTTATAATA‑AAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                             <  1:288351/128‑1 (MQ=255)
                                              ttATAATGTATATACTTTTTATATATTTTTTTATTTTTTTTTCTTA‑ACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                                           <  1:3147859/128‑1 (MQ=255)
                                                aaaaTGTATATCCACCTTATCTATTTTTTTATTTTTTTATCTT‑‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                         <  1:2273837/126‑1 (MQ=255)
                                                       ttaTCCTAGTTATATATTTTTTTATTTTTTTATATTA‑ACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                 <  1:549676/126‑1 (MQ=255)
                                                           ctttttttaattttttattATTT‑TTTTTATTT‑AAAAAT‑AAAAAAAAAAAAAAACCC‑ATAAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  2:3804715/116‑1 (MQ=255)
                                                           ctagttatttattttttttATTT‑TTTAATTTC‑AAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑A‑‑ATAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACca                                                               <  2:968684/116‑1 (MQ=255)
                                                           aaaatttatatatttttttattttttTATATTA‑AAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:103008/118‑1 (MQ=255)
                                                            ctctttatatatttttttattttttTATATTA‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                              <  1:2186249/119‑1 (MQ=255)
                                                             ggttttataatttttttattt‑ttttTTTTA‑AAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑‑A‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                           <  2:3825513/119‑1 (MQ=255)
                                                              tttttaaaaTTTTTTTATTT‑TTTAAATAT‑AAAAAA‑AAAAAAAAAAAAAAACCCTAAAAA‑‑‑A‑‑ATAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                             <  1:496533/120‑1 (MQ=255)
                                                                ttttatttttttttatttttttaTATAA‑AAAAAA‑AAAAAAAAAAAAAAACAC‑TTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                           <  1:870591/121‑1 (MQ=255)
                                                                ttatcttattatttATTTTTTTATCTTA‑ACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑A‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:3503929/117‑1 (MQ=255)
                                                                 attatatttttttattt‑tttATAATT‑AAAAAA‑AAAAAAAAAAAAAAAACCATT‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                        <  1:1188682/124‑1 (MQ=255)
                                                                  tatttattttttattttttaATTTTA‑AAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACatttta                                                        <  2:2752800/122‑1 (MQ=255)
                                                                   atattttttttATTT‑TTAATAATA‑AAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                      <  1:1173529/124‑1 (MQ=255)
                                                                    cTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAAAAAAAAATATTTCTTAAAATTCACTATAATTCCACattttatat                                                     >  2:2070198/1‑126 (MQ=255)
                                                                        ttttttttttttttATAATA‑AAAAAA‑AAAAAAAAAAAAATTCCC‑TTAAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                   <  1:210865/128‑1 (MQ=255)
                                                                        ttttttttttttTAAAATTT‑AAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:1214077/128‑1 (MQ=255)
                                                                        ttttttATTTTTTTTTTTTA‑AAAAAA‑AAAAAAAAAAAAAAACCCTTTAAA‑‑‑A‑‑TTAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  2:373654/128‑1 (MQ=255)
                                                                          ttttATTTTTTTATAATA‑ACAAAT‑‑AAAAAAAAACAATCCCATT‑‑‑A‑‑‑A‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:2509396/128‑1 (MQ=255)
                                                                           tttATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑‑‑‑‑TAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  1:3248191/128‑1 (MQ=255)
                                                                           tttATTTTTTTATATTA‑AAAAAA‑AAAAAAAAAAAAATACCC‑ATAAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  1:746761/128‑1 (MQ=255)
                                                                             tATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAATCACCTT‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:2775941/128‑1 (MQ=255)
                                                                               ttttttTATATTA‑AAAAAA‑AAAAAAAAAAAAATAACC‑TTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:1444508/128‑1 (MQ=255)
                                                                                 tttttATATTA‑AAAAAT‑AAAAAAAAAAAAATACC‑‑TTTAA‑‑‑A‑‑AAAT‑AAAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  1:1882939/126‑1 (MQ=255)
                                                                                    ttttaattaaaaaaa‑aaaaaaaaaaaaATAACATTAAAA‑‑‑A‑‑TTAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                         <  1:3562884/117‑1 (MQ=255)
                                                                                    ttATATTC‑CCAAAA‑AAAAAAAAAACACTCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACACACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTg                                     <  2:3263848/128‑1 (MQ=255)
                                                                                     taatataaacaAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  2:3933015/120‑1 (MQ=255)
                                                                                     tATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑A‑‑‑A‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAAAAAACAAAATTAAATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAATTTTTGACa                                  >  2:3514996/1‑128 (MQ=255)
                                                                                      tttattataaaaa‑aaaaaaaaaaaaaaATACATTT‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  2:2351129/119‑1 (MQ=255)
                                                                                      tatatttaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATTA‑‑AAAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  1:3610189/119‑1 (MQ=255)
                                                                                      aataataaaaaaT‑AAAAAAAAAAAAAAACCC‑TTAAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  1:883658/119‑1 (MQ=255)
                                                                                       aatttaaaaaaa‑aaaaaaaaaaaaATACCCAT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                   <  2:3046636/120‑1 (MQ=255)
                                                                                         tatttaaaaT‑AAAAAAAAAAAAATACC‑‑GATAA‑‑‑A‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                  <  2:3608838/122‑1 (MQ=255)
                                                                                           taaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                <  1:1511183/124‑1 (MQ=255)
                                                                                            aaaaaaa‑aaaaaaaaaaaaaaACCATTAAAA‑‑‑AATAAAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                   <  2:2985475/125‑1 (MQ=255)
                                                                                              aaaaa‑aaaaaaaaaaaaATACACA‑‑TAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                             <  1:2011034/127‑1 (MQ=255)
                                                                                                 aT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAA‑‑‑‑AAAAACAAAAACTTTTTATTAAAATTCCATATTAAACAACATTTTTTTTTTAAAATAAGATATTAAATTAATATTtatata                     >  2:431221/1‑128 (MQ=255)
                                                                                                 aT‑AAAAAAAAAACAAT‑ACCATTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                           <  1:3559447/128‑1 (MQ=255)
                                                                                                  t‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑‑A‑‑AAAT‑T‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt                      <  1:3812424/128‑1 (MQ=255)
                                                                                                      aaaaaaaaCAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑TAAAAACAAACATTTTTTTTTAAAAATACAAATAATAAAACATTTATTTTAAAAAAAAAAATATTAAAataaataaaaaaaa                     >  1:2989324/1‑118 (MQ=255)
                                                                                                        aaaaaaCAATCCCC‑TTAAA‑‑‑A‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAAATAAAAACAAACTATTTTTATTAAAATTACCTATTAAACACAATTTTTTTTTTAAAATAATAAATTGAAataaaaaaaatata                     >  1:3084822/1‑118 (MQ=255)
                                                                                                         aaaaaCAATCCCC‑‑TTAA‑‑‑A‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAAAAAAATAAATTTATAAAAATAAACTATTATAAAAATTTTTTTTTTTAAAAAATATTATTTAATTAATATAAATATAat                   >  1:2604645/1‑128 (MQ=255)
                                                                                                            aaaaaaattacattaa‑‑‑a‑‑aatt‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                  <  1:1412104/116‑1 (MQ=255)
                                                                                                              aaaaaataccttAA‑‑‑A‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                <  1:2048693/118‑1 (MQ=255)
                                                                                                              aaaaaaaaatataa‑‑‑a‑‑atataaaaaaAAA‑AAAAAAAAAAAAAATTAAAACAAACTATATTTATTAAAATTCACTATTATACCACATTTTATTTTTAAAATAATATATTTACATAATATATATCTAatat                 <  1:1076018/117‑1 (MQ=255)
                                                                                                               acaataaccttaa‑‑‑a‑‑aatt‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:1790938/119‑1 (MQ=255)
                                                                                                               aaaaaccacttaa‑‑‑a‑‑aatt‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:3973429/119‑1 (MQ=255)
                                                                                                                 aaatcacatta‑‑‑a‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat             <  1:3268553/118‑1 (MQ=255)
                                                                                                                 aaaacccataa‑‑‑a‑‑aatt‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat             <  1:3459007/120‑1 (MQ=255)
                                                                                                                  atacccataa‑‑‑a‑‑aaat‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata            <  1:3231204/121‑1 (MQ=255)
                                                                                                                   ttaaattta‑‑‑a‑‑aatt‑aaaaaaAA‑AAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa           <  1:97805/120‑1 (MQ=255)
                                                                                                                    accattta‑‑‑a‑‑aaat‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat          <  2:3249041/121‑1 (MQ=255)
                                                                                                                     cccatta‑‑‑a‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata         <  1:1656462/122‑1 (MQ=255)
                                                                                                                      tattaa‑‑‑a‑‑aatt‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc        <  2:403117/126‑1 (MQ=255)
                                                                                                                      ccataa‑‑‑a‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc        <  2:3026020/125‑1 (MQ=255)
                                                                                                                      caataa‑‑‑a‑‑aatt‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTAATTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc        <  2:3283849/125‑1 (MQ=255)
                                                                                                                         tta‑‑‑a‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAAATAAAAACAAAAGCTATTTATTAAAATTCCATATTATACCACATTTTATTTTTAAAAAAAGATTTTTAAATAATAAATATCTAATATATATAATAatat     >  1:432316/3‑128 (MQ=255)
                                                                                                                           a‑‑‑a‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAA‑TAAAAACAAACAGAATTTATAAAAATAACAAATTTAACAAAATTTTATTTTTAAAATAAAAAATAACCAAAAAAAAAATATAATATAAATAATAATATAtt  >  2:186245/1‑128 (MQ=255)
                                                                                                                           |                                                                                                                                       
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑A‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.