New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 311148526 (0.370)340 (0.190)
+TATA		 89/192 34.2 33.6% intergenic (‑71/‑243) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21
?CP016816 311149 = 724 (0.400)intergenic (‑72/‑242) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1089 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276
                                                                                                                                 |                                                                                                                                       
gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAACTAAAATACTTGTTACATACGAGTCAAAACATATATAACATAcattcat‑‑t                                                                                                                                         >  1:2269436/1‑128 (MQ=255)
gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattcat‑‑t                                                                                                                                         >  1:3544919/1‑128 (MQ=255)
gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattcat‑‑t                                                                                                                                         >  1:690687/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACATGTTACATACGAATCAAAACAGATAAAACATACATTCAT‑‑tat                                                                                                                                       >  1:545072/1‑128 (MQ=255)
   ccAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tata                                                                                                                                      >  1:2362739/1‑128 (MQ=255)
    cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatat                                                                                                                                     >  1:2797070/1‑128 (MQ=255)
        tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatat                                                                                                                                 >  1:2597978/1‑128 (MQ=255)
        tGTAATAACTAATACAAATTTATTTAAAATTTTAATTAACTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatat                                                                                                                                 <  2:2047261/128‑1 (MQ=255)
         gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTTCACACCCCTTATTAAAAAATAAAATACTAGTTACATAAGATTCAAAACATATATAAAATACAATAAT‑‑tataaatata                                                                                                                                >  1:3134700/1‑128 (MQ=255)
           attagttattacAACTGGACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                              >  1:3302180/12‑128 (MQ=255)
           aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACCTACATTCAT‑‑tatatataaata                                                                                                                              >  2:3032297/1‑128 (MQ=255)
              aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatat                                                                                                                           <  1:1063043/128‑1 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatata                                                                                                                          >  2:3070067/1‑128 (MQ=255)
                cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑tatatatatatatatat                                                                                                                         >  1:1639905/1‑128 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                        >  1:2685767/1‑128 (MQ=255)
                 tAATCAAAATTATCTTAAAATATTTTTTAAATTTTTTTTTTTTAACACACCTTTTTAAAAAATATAATATTTTTTACATAATATTAAAAAAATATATATAATATATTTTT‑‑tatatatatatatatata                                                                                                                        <  2:1583062/128‑1 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                                     >  2:1358357/1‑128 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                                     >  2:3690833/1‑128 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatata                                                                                                                    >  1:1779026/1‑128 (MQ=255)
                     acAAATGAACTTAAAATTCTAAATAAATTTTTCATTTTACACACAACATATTAAAAATAAAAATAATTTTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatata                                                                                                                    <  1:1009770/127‑1 (MQ=255)
                        aaatatattAAAATTTTAAATAACTTTTTCATTATACACACCTCTTATTAAAAAATAAAATAATTTTTACAAAATATAAAAAAAATATATAACATACATTATT‑‑aatatatatatatatatatatatat                                                                                                                 <  1:1177688/121‑1 (MQ=255)
                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGATACATACGATTCAAAACAAAAAAAAAATACATTCAT‑‑aatatatataaatatatatatatat                                                                                                                 >  1:253768/1‑128 (MQ=255)
                          tGAACTTAAAATTGTAATTAAATTTTTCATTTTACAAACCAATTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatgca                                                                                                               <  2:2748758/128‑6 (MQ=255)
                            atattAAAATTTTAATTAAATTTTTCATTTTACACACTCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatataatgaatgta                                                                                                             <  2:398027/125‑10 (MQ=255)
                            aaCTTAAAATTGTAATTAAATTTTTCATTTTACACAACCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATg                                                                                                      <  2:2966072/128‑1 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                            >  1:2863275/1‑122 (MQ=255)
                                tAAAAATGTAAATAACTTTTTCATATTACACACCCCCAATTAAAAAAAAAAATAATTGATAAACAACATTCAAAAAAAATATAACATACAATCAT‑‑tatatatatatatatatatataaat‑‑‑‑‑‑atatatat                                                                                                   <  1:2486872/128‑8 (MQ=255)
                                  aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat‑‑‑‑‑‑ataattcaat                                                                                                 >  1:2983446/1‑119 (MQ=255)
                                  aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑atat                                                                                               >  2:3394502/1‑128 (MQ=255)
                                   aaTAGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATATCATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATg                                                                                              <  1:2013330/128‑1 (MQ=255)
                                     ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat‑‑‑‑‑‑ataattaaatatt                                                                                              >  2:2273893/1‑116 (MQ=255)
                                     tatctaTTAAATTTTTCTTTTTACACACAACTTATTAAAAAATAAAATATTTTTTAGATAATATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTaaa                                                                                          <  2:301140/123‑1 (MQ=255)
                                       gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATg                                                                                        <  1:3233567/128‑1 (MQ=255)
                                        tAATTAAATTTTTCATATTAAACACCACTTATTAAAAAATAAAATAATTGTTACATAATATTCAAAAAATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGa                                                                                       <  2:2589975/128‑1 (MQ=255)
                                         atatatatttttAATTTTAATCAAACATTATTAAAAAATAAAATATTTGTTTAATAATATTTAAAATATATATAAAATACATTTTT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATg                                                                                        <  2:912887/121‑1 (MQ=255)
                                          aTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATACATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGa                                                                                       >  2:658604/1‑128 (MQ=255)
                                           ttAACTTTTTCATATTACACACCCAATATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAA‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGaa                                                                                      <  2:3115612/128‑1 (MQ=255)
                                              aatttttAATTTTAAACACAACTTATTAAAAAATAAAATACTTGTTTAATACGATTAAAAACATATATAACATACATTAATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGaaa                                                                                     <  2:3736294/126‑1 (MQ=255)
                                               atatttattattACACACACATTATTAATAAATAATAAAATTTTTACATAAGATTAAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAata                                                                                  <  2:1633634/118‑1 (MQ=25)
                                                  tttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAatat                                                                                 >  2:482730/1‑128 (MQ=255)
                                                   ttCTTTTTAAACACCACTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGtat                                                                            <  2:748799/128‑1 (MQ=255)
                                                   ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTAA‑ATATATaaaattattttttaa                                                                              >  1:1475135/1‑116 (MQ=38)
                                                    tCATTTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACTATTCAAAAAATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGta                                                                             <  2:2871049/128‑1 (MQ=255)
                                                     ctttttACACACAAATTATTAAAAAATAAAATTATTGTTACATACGATTCAAAAAATATATAAAATAAATTTAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGtat                                                                            <  2:1287928/126‑1 (MQ=38)
                                                          taaacaaaccatattaAAAAATAAAATACTTTTTACATAATATTCTAAAAATATATAACATATATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAg                                                                       <  1:1851745/117‑1 (MQ=37)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATCTAAATTAAAATATTTTataata                                                                        >  2:1427703/1‑128 (MQ=255)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATTTATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑ATATGTAAAGGATAATATTTTataatata                                                                      >  2:2083390/1‑126 (MQ=38)
                                                           acacacAACTTATAAAATAATAAAATACTTTTTACATACGATTCAAAAAATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGc                                                                      <  2:3228731/128‑1 (MQ=39)
                                                            cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATTTAAAAGAAAATATTGTataatat                                                                       >  1:1334624/1‑127 (MQ=255)
                                                               acaccTTATTAAAAAATAAAATAATTGTTACATACTATTCTAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGt                                                                <  2:2816742/125‑1 (MQ=255)
                                                                 cccATATTAAAAAATAAAATAATTGTTACATAAGATTGAAAAAATATATAACATATAATCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGt                                                                <  2:3928240/128‑1 (MQ=38)
                                                                    ttattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑ATATGTAAATGAAAATATTGTATAATAGCAAAAGTTtata                                                           >  2:2356791/1‑128 (MQ=255)
                                                                     tattaAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                          <  1:2417671/128‑1 (MQ=255)
                                                                      attaAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑ATAAATATATATATAAATAAAAATATTTTATAATAAAAACCTTTta                                                             >  2:1700802/1‑128 (MQ=255)
                                                                          aaaaaaaaaaTAATTTTTAAATAATAATAAAAAAATATATAAAATATATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                       <  2:3520108/128‑1 (MQ=37)
                                                                          aaaaaTAAAATAATTTTTACATAAGATTCAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                       <  1:404491/128‑1 (MQ=255)
                                                                             aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑AATCA‑ATATTTAAATGAAAATATGTTATAATAGAAACCTTTTATAAATTaaa                                                    >  1:3041391/1‑128 (MQ=255)
                                                                               taaaataATTGTTAAATATTATTAAAAATATATATATAATACATTTAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                  <  1:624332/128‑1 (MQ=37)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑AAGAA‑ATAAAAAAAAGAAAATATTATATAATATCAAAATTTTATAAAATaaaaaa                                                 >  2:2428324/1‑128 (MQ=25)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTCA‑ATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAAt                                               >  2:2303297/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTCA‑ATATTTAAATGAAAATATTTTATAATATCAAACTTTTATAAATaaaaaaaa                                                >  1:1111237/1‑128 (MQ=38)
                                                                                  aataatTTTTACATAATATTAAAAAAATATATAACATACATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAAt                                               <  1:765584/128‑1 (MQ=38)
                                                                                  aataatTGTTAAATAAGATTAAAAATATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAgtagta                                           <  2:1118899/128‑1 (MQ=255)
                                                                                   ataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATATATAAA‑ATGCA‑ATATGTAAATGAAAATATTTTATAATAGAAACAGTTTATAAAGTaaa                                                    >  2:188794/1‑128 (MQ=255)
                                                                                    taCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTAA‑ATATTTAAATTAAAATATTTTATAATAGCAACCTTTTATAAATTaaaaaatataaa                                           >  2:1984758/1‑122 (MQ=255)
                                                                                     aattGTTACATACTATTCAAAACATATATAACATATATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                          <  1:2165688/126‑1 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTAA‑ATATTTAAATGAAAATATTGTATAATAGAAAAAGTATATAAATTAAAAAAATa                                              >  1:1258473/1‑128 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGt                                            <  1:1381859/128‑1 (MQ=255)
                                                                                      cTTTTTATATATGATTCAAAAAATATATAACATAAATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTa                                           <  2:2654220/128‑1 (MQ=39)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCT‑ATATTTAAATAAAAATATTTTATAATAGAAACCGTTTATAAATTAAAAAAATATTaa                                          >  2:2157280/1‑128 (MQ=38)
                                                                                        ttttAAATAAGATTCAAAAAATATATAACATAAAATCTA‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                         <  2:828744/126‑1 (MQ=255)
                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTATATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                         >  1:2758639/1‑128 (MQ=255)
                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑‑‑‑‑A‑ATTCA‑ATATGTAAATAAAAATATGGTATAATAGCAACCTTTTATATAATAAAAAAATATTAAAaata                                     >  2:175851/1‑128 (MQ=255)
                                                                                          ttACATACGATTTAAAACATATATAACATATAATAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  1:1707504/128‑1 (MQ=255)
                                                                                           tatataataTTCAAAAAATATATATCATAAAATAATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                        <  1:1934356/120‑1 (MQ=255)
                                                                                            aCATAATATTCAAAACATATATAACATAAATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAtata                                     <  1:1571695/128‑1 (MQ=39)
                                                                                              aTACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGAA‑ATATTTAAATGAAAATATGATATAATAGCAACATTTTATAAAGTAAAAAAATAGAAAATAtact                                   >  2:219941/1‑128 (MQ=38)
                                                                                                aCGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑AAGCA‑ATATGTAAATTAAAATATTTTATAATATCAACATTTTATAAAATAAAAATATAATAAATAtactac                                 >  1:3902811/1‑128 (MQ=255)
                                                                                                   aTTCAAAACATATATAAAATACATTTAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              <  1:2078718/128‑1 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑AATAA‑ATATGTAAATTAAAAAATTTTATAATAGCAACAATATATAAATTAAAAAAATAGTAAATATactactat                              >  2:1189549/1‑126 (MQ=255)
                                                                                                         aacatatataacatatatTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                        <  2:3590269/128‑1 (MQ=255)
                                                                                                          aCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGTTATAATATCAACCTTTTATAAAATAAAAAAATAGTAAATATACTACTTATTTACta                       >  1:3425527/1‑128 (MQ=255)
                                                                                                          aCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGTTATAATAGCAAACGTTTATAAAGTAAAAATATATTAAATATAATAATTATTTaataat                     >  2:1529348/1‑128 (MQ=255)
                                                                                                            atatatatATTAAATTAAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                     <  2:252012/128‑1 (MQ=39)
                                                                                                            atatatAACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑AAGAA‑ATATGTAAATGAAAATATTGTATAATATCAACCGTTTATAAAGTAAAAAAATAGTAAATATAAAACTTATTAACta                       >  2:3624777/1‑128 (MQ=255)
                                                                                                             tatataTTATACATTGTT‑‑TATATATATATATATTTATATATAT‑‑‑‑‑‑A‑ATGCA‑ATAATTAAATGAAAATATGGTATAATAGCAACCGTTTATTATGTAAAATACTAGTAAATATACTACTTATTTACtaata                    <  1:858774/128‑1 (MQ=255)
                                                                                                             tatataACATACATTCAT‑‑CATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTAA‑ATATATAAATGAAAATATTTTATAATAGAAACATTTTATAAATTAAAAAAATAATATATATAATAATTATTAAataata                    >  1:3714040/1‑128 (MQ=255)
                                                                                                              atataACATACATTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                     <  1:482730/128‑1 (MQ=255)
                                                                                                                 taACATAAAATCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt                <  1:979486/128‑1 (MQ=255)
                                                                                                                  aaCATACATTCAT‑‑TATATATATATATATATATATATA‑‑‑‑‑‑‑A‑A‑GCT‑ATATTTATATTAAAATATTATATAATAAAAAACTTATAAAAATTAAAAAAATAATAAATAAACTAGATTTTAACTAATAAAAtata             >  2:3870129/1‑128 (MQ=255)
                                                                                                                   atatacatTTAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt              <  2:1041263/126‑1 (MQ=255)
                                                                                                                   acatatatTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt              <  1:3772867/128‑1 (MQ=255)
                                                                                                                     atacatTCATTATATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATTAA‑ATATGTAAATTAAAATATGTTATAATAGCAAACGTTTATAAAGTATAAAAATATTAAATATACTAATTATTTTATAATAAAATCt              >  2:3311860/1‑128 (MQ=255)
                                                                                                                     atacatTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑AAAAA‑ATATAAAAAATAAAATATTTTATAATAACAACATTATATAAATTAAAAAAATATAAAATAAAAAAATTATATACTAATAAAatatat            >  2:588248/1‑128 (MQ=255)
                                                                                                                      tacatTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATTGTATAATATCAACAGTTTATAAAGTAAAAAAATAGAAAATATACTAATTATTTACTAATAAAATCTAtt           >  1:3826633/1‑128 (MQ=39)
                                                                                                                       acatTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt          <  1:3620063/128‑1 (MQ=255)
                                                                                                                         ttgcat‑‑tATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATTAATATATGGTATAATAGAAACCTTTTATAAAGTAAAAAAATAGTATATATACTACTTATTTAATTATAAAATCTAttttt        >  1:3366309/4‑128 (MQ=38)
                                                                                                                          atcat‑‑tATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATTTTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTttta       <  1:3670672/127‑1 (MQ=255)
                                                                                                                            ttatatatatatatatatatatatatatat‑‑‑‑‑‑a‑AATAA‑ATATATAAATGAAAATATGATATAATAGCAACATTTTATAAAAAAAAAATATACTAAAAATAAAACTTATTAAAAAATAATATATATTttta       >  1:3075569/6‑128 (MQ=255)
                                                                                                                            aat‑‑tATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttatt     <  2:3836561/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑‑‑‑‑A‑ATGCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.