New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 437885 =992 (0.550)83 (0.060) 55/204 53.7 9.7% intergenic (‑189/+233) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
?CP016816 = 437880 741 (0.500)intergenic (‑184/+238) JCVSYN2_01985/JCVSYN2_01990 glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1027 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007
                                                                                                                                 |                                                                                                                                       
tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑g                                                                                                                                         >  2:3450390/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑a                                                                                                                                  >  2:762324/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGATTTAAT‑‑G‑‑‑‑‑‑a                                                                                                                                  >  1:1770967/1‑128 (MQ=255)
 gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑a                                                                                                                                  >  1:1227420/1‑128 (MQ=255)
    aCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atat                                                                                                                               >  2:2126235/1‑128 (MQ=255)
     cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atata                                                                                                                              >  1:312260/1‑128 (MQ=255)
        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatat                                                                                                                           >  2:2383427/1‑128 (MQ=255)
             tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAATTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatata                                                                                                                      >  2:1193887/1‑128 (MQ=255)
              gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatat                                                                                                                     >  1:3362445/1‑128 (MQ=255)
               tatttGTTAGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatata                                                                                                                    <  2:3856460/125‑1 (MQ=255)
                 gttgttAGTTTCATTTTTTATAAATTTTAGAAATATATATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGAAAAAACCTCCATATTATCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatata                                                                                                                  <  2:2198413/128‑1 (MQ=255)
                  ttGTAATTTTTATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatat                                                                                                                 <  2:1720978/128‑1 (MQ=255)
                  atgttattgtaaTTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATGAAATGAAGAAAATCAAAAACCTCCATATTACCTATAGAGATAAT‑‑G‑‑‑‑‑‑atatatatatatatatat                                                                                                                 <  1:1293157/117‑1 (MQ=255)
                   tGTAAGATTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatata                                                                                                                <  1:3307887/128‑1 (MQ=255)
                    ttAAGTTTAATTTTTAATATATATTATAAATAAAAAATTTATTTTTAATATAAATATTTTATGAAATGAAGAAAAGCAAAAACCTCAATATTACCTATAGAGTTTAT‑‑G‑‑‑‑‑‑atatatatatatatatatat                                                                                                               <  1:581457/127‑1 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatat                                                                                                               >  2:1582313/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatat                                                                                                               >  2:2331597/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatat                                                                                                               >  1:3781415/1‑128 (MQ=255)
                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatat                                                                                                               >  1:463252/1‑128 (MQ=255)
                       aGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatata                                                                                                            >  2:505017/1‑128 (MQ=255)
                         tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatata                                                                                                          <  1:1343067/128‑1 (MQ=255)
                         attCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATATATATTTTAGGAAATGAATCAAATCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatata                                                                                                          <  2:2822198/127‑1 (MQ=255)
                          ttaaTTTTTAAAAAATATAATAAATAAAAATTGTATATTTAAAATAAATATATTAGTAAATCAAGCACATCAAAAACCTCAATATTAACTATAGAGATAAA‑‑G‑‑‑‑‑‑atatatatatatatatatatatatat                                                                                                         <  1:2065972/125‑1 (MQ=255)
                           tatttttttATAAATATAATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATAAAAGAAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatatata                                                                                                        <  2:337893/125‑1 (MQ=255)
                              attttAATATATATTATAAATAAAAATTGTAATTTTATAATATATATTTTATTAAAATAATAAAATCAAAAAACTCCATATTATATATATAGTTAAT‑‑T‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑Gc                                                                                                   <  2:3223760/127‑1 (MQ=255)
                                 ttAATAATTATTATAATTATAAATAGTTTTTTTATAATAAATATTTTTTGAAATGTAGCAAAGCAAAAACATCAATATTACCTATAGAGTTATT‑‑T‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAg                                                                                                <  2:616882/128‑1 (MQ=255)
                                 ttAATAAATATTATAAATAAAAAATTTATTTTTAAAATAAATATTTTATTATATGAATAAAATAAAAAAAATACATATTACCTATAGAGTTAAT‑‑T‑‑‑‑‑‑atatatatatatatatatatatatgcaagcgat                                                                                                  <  1:2897556/128‑10 (MQ=255)
                                 ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatatgcaagcgat                                                                                                  <  1:3836701/128‑10 (MQ=255)
                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatgcacgcgatcac                                                                                                 >  1:1673637/1‑116 (MQ=255)
                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑atatatatatatatatatatatatattttatata                                                                                                 >  1:259350/1‑120 (MQ=255)
                                   aataaataTTAGATATAAAAATTGTATTTTTATAAAAAATATTTTATTAAAATAACCAAATAAAAAAACTCAATATTAACTATAGAGATAAA‑‑G‑‑‑‑‑‑atatatatatatatatatatatatatatatatgca                                                                                                <  1:925087/128‑8 (MQ=255)
                                    ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGC‑AAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAA‑‑Gctcgctca                                                                                            >  1:3450894/1‑121 (MQ=255)
                                     taaataTTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAACCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑T‑‑‑‑‑‑atatatatatatatatatatatatatatatgcaagcg                                                                                              <  2:3028798/128‑10 (MQ=255)
                                       aataTTAGAAATAAAAATTGTATTTTTAAAATATATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCAAGCGATCAGCAt                                                                                      <  2:550004/128‑1 (MQ=255)
                                       aataTAATAAATAAAAAATTTATTTATATAATAAATATTTTATTTATTTAATCAAACAAAAAAACTCCATATAAACTATAGAGATACT‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATATATAT‑‑GCAAGCGATCAGCAt                                                                                      <  1:2723833/128‑1 (MQ=255)
                                         tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCg                                                                                              >  1:3074239/1‑122 (MQ=255)
                                          atTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATTAAAAAAATAAAAAAAATAAATATTAACTATAGAGATAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCa                                                                                       <  1:2828415/128‑1 (MQ=255)
                                            tAGATATAATATTTGTTTTTTTTAAATATATATTTTTTTAAATGAAGAAAATCTAAAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATa                                                                                     <  2:2025079/128‑1 (MQ=255)
                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGATATTAATCAAAGCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaaa                                                                                   <  2:2972197/128‑1 (MQ=255)
                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaaa                                                                                   >  1:1630664/1‑128 (MQ=255)
                                               aaaTATAAATTTTATTTTTAAAATAAATATATTATTATATTAATCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaa                                                                                    <  2:3132676/128‑1 (MQ=255)
                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTATGATATGAATCAAAGAAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaaaa                                                                                  <  1:3591717/128‑1 (MQ=255)
                                                 aTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑ATATATATATATATATATATATATATAT‑‑GCTAGCGATCAGCATaa                                                                                    >  1:1003664/1‑128 (MQ=255)
                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATaat                                                                                   >  2:3318972/1‑127 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATATATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAAt                                                                         <  1:2786111/128‑1 (MQ=255)
                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑TCAAGCGCTCATCATAAAATgg                                                                               >  2:1877639/1‑128 (MQ=255)
                                                      aaTTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAATCAAAAAACTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAAt                                                                         <  2:3967687/128‑1 (MQ=255)
                                                        ttGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑TCTATCGATCAGAATAAAATGGTGAAAt                                                                         >  1:3182326/1‑128 (MQ=255)
                                                          gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCACTCGATCAGAATAAAATGGAGATATTTat                                                                     >  1:1133075/1‑127 (MQ=255)
                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑ACAAGCGATCAGCATAAAATGGTGAAATTTa                                                                      <  1:201552/128‑1 (MQ=255)
                                                            aTTTTTAAAATAAATGTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCTAGCTAGCAGAATAAAATGGTGAAatatatat                                                                   >  2:2495655/1‑128 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTAGTAAATTAAGCAAAGAAAAAAACTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAAttt                                                                       <  2:153007/128‑1 (MQ=255)
                                                            aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAAttt                                                                       >  1:1934585/1‑128 (MQ=255)
                                                             tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑TCAAGCGATCAGAATAAAATGGTGATATTTAGa                                                                    >  1:3408779/1‑128 (MQ=255)
                                                              ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCACGAGATCAGAATAAAATTGTGAAATTTAGAt                                                                   >  2:1789954/1‑128 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACATCTATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                <  1:1450419/128‑1 (MQ=255)
                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCAATCGATCAGCATAAAATGGAGAAATTTAGATCTGAgat                                                            >  2:853289/1‑126 (MQ=255)
                                                                  aaaaTAAATATTTTATTTAATCAATCAAATAAAAAACATCCATATTATATATATATTTAA‑‑‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                           <  2:1347577/128‑1 (MQ=255)
                                                                    ttttaactctatAGGAAATGAAGCAAATCAATAACCTCGTTATTTACTATAGAGTTTAT‑‑‑‑‑‑‑‑‑‑TTTTTATATAAATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                           <  1:2295657/117‑1 (MQ=255)
                                                                       aaataTTTTATTAAATGAATCAAAGAAAAAACCTCAATATTATCTATTGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAGATTTAGATCTGAGTTgg                                                          <  1:629509/128‑1 (MQ=255)
                                                                       aaataTTTTATGAAATTAAGCAAAGATAAAAACTACATATTACCTATATAGTTAAA‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTgg                                                          <  2:2902232/128‑1 (MQ=255)
                                                                       aaataTTTTAGGAAATGAATCAAAGCAAAAAACTACATATTAGCTATAGAGTTAATTAT‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  1:2492221/128‑1 (MQ=255)
                                                                          tatTTTAGGAAATGAAGCAAATCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                     <  1:762324/128‑1 (MQ=255)
                                                                            ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑CAAAGCTAACAGCATAAAATTGAGAAATTTATATCTGAGTTTGTCTTa                                                     >  2:3711583/1‑128 (MQ=255)
                                                                             tttAGTTAATTAATCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                              <  2:917889/128‑1 (MQ=255)
                                                                                      tttagcaaatcaaAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                         <  1:700130/125‑1 (MQ=255)
                                                                                      ttaagctatgcaAAAACCTCGATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                           <  2:196052/126‑1 (MQ=255)
                                                                                         agcaaagcaaAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGAATAAAATTTTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTATtttt                                        >  1:2230808/1‑128 (MQ=255)
                                                                                          gcaaagcaaaAACCTCCATATTACCTATAGAGTTTAA‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAA‑‑TAAAGCTAAGATAATAAAATGCTTAATTTTATATCTTAGATGTTCTAATAttaatattttat                                       >  2:2072267/1‑118 (MQ=255)
                                                                                          gcaaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑TCAAGCTATCAGAATTAAATTGTGAAATTTAGATCTGAGTTTGTATTAAATTTTTAtttt                                         >  2:277678/1‑128 (MQ=255)
                                                                                          gcaaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GAAAGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                       >  1:3672532/1‑128 (MQ=255)
                                                                                             aatcaaaAACATCCATATTTACTATAGAGTTTAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTtttatt                                    <  2:2689582/125‑1 (MQ=255)
                                                                                             aagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                    >  2:2638988/1‑128 (MQ=255)
                                                                                              atcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                   <  1:2438167/126‑1 (MQ=255)
                                                                                              agcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCATAATAAAATAGTCAAATTTATATCTGATTTGGTCTTAAATTTTTAGTTtttat                                     >  2:1476853/1‑128 (MQ=255)
                                                                                              agcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                   <  2:2285086/128‑1 (MQ=255)
                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                      >  1:2347862/1‑108 (MQ=255)
                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAA‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGCTCTTAAATTTATAGTTtatattta                                  >  2:3627180/1‑128 (MQ=255)
                                                                                                 taaaatctttaaatTAACTATAGAGATAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAATATGGTGAAATTTAGATCTGAGTTGGTCTTTAATTTGTAGTTTTtatatata                                <  1:517201/116‑1 (MQ=255)
                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATATAATAAAGCGAACAAAATAAAATAGTGATATATAGATATGATTAGGTATTTAATTTTTAGATTttatatat                                 >  2:682676/1‑128 (MQ=255)
                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTATTTTTTATTTATAg                               >  1:3511669/1‑128 (MQ=255)
                                                                                                     aCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                        >  1:3962155/1‑128 (MQ=255)
                                                                                                        tcatgatTAACTATAGAGTTTAA‑‑T‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAATCGATCAGCATTAAATTGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                         <  2:2579882/123‑1 (MQ=255)
                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATA‑A‑ATATATATATAT‑‑GAAAGAGATCATAATAAATAGATAAAATAAATATATGAGTTAGTAAAATATTTAGATTTTTTATTAATATTTTATaaa                       >  2:1252056/1‑128 (MQ=255)
                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaaa                       >  2:37833/1‑128 (MQ=255)
                                                                                                         cactataACATATATAGATAAT‑‑T‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                        <  2:1639936/125‑1 (MQ=255)
                                                                                                          cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTATATCTGATATTGTATTAAATTTGTAGTTTATATTTATAGTTTATAAAga                     >  1:1089433/1‑127 (MQ=255)
                                                                                                           atatTACCTATAGAGTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTATTTATAGTTTATaa                        >  1:390859/1‑128 (MQ=255)
                                                                                                            tatTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTATTAAATTTTTAGTTTTTATTTATAGTTta                           >  2:1120054/1‑128 (MQ=255)
                                                                                                            tatTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCTATCAGCATAAAATGGTGATATTTAGATCTGATTTGATATTAAATTTTTAGTTTTTATTTATATTTTATaaatt                     >  2:1009458/1‑126 (MQ=255)
                                                                                                            tatTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAga                     >  1:2133572/1‑127 (MQ=255)
                                                                                                            tatTACCTATAGAGATAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                   <  1:1552131/128‑1 (MQ=255)
                                                                                                             atTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATTGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGttta                  >  1:881852/1‑126 (MQ=255)
                                                                                                              tttacTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                   <  2:352435/124‑1 (MQ=255)
                                                                                                               tacatctatagTTTAT‑‑G‑‑‑‑‑‑TTATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                  <  1:1173073/119‑1 (MQ=255)
                                                                                                                  cTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑TAAAGAGATAAGAATAAAATTTAGATATATATATCTGAGTTTTTCTAAAAATTGTATTTTTTATTTATAGTTTATAAATTtaataa               >  1:825006/1‑128 (MQ=255)
                                                                                                                  cTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  2:1402567/128‑1 (MQ=255)
                                                                                                                     taGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt            <  1:1834726/128‑1 (MQ=255)
                                                                                                                     taGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGAATAAAATTGTGAAATTTATATCTGAGTTTGTCTTAATTTTGTAGTTTTTATTTATATTTTATAAAGTTAATAAttt            >  1:3221630/1‑128 (MQ=255)
                                                                                                                        agTTAAT‑‑GAT‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  1:2989126/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATAT‑‑GCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437753‑438007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.