Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9400CA30.5% 3108.4 / 230.0 1593intergenic (+44/+122)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base C (926/144);  new base A (25/444);  total (951/642)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1611 total aligned reads displayed.

TCATTCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTT  >  CP016816/34813‑35067
                                                                                                                                 |                                                                                                                                       
       ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aa                                                                                                                          >  2:1240167/1‑128 (MQ=255)
              tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTGTGTTTTGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aaaaaaaaa                                                                                                                   >  1:1648504/1‑128 (MQ=255)
               ttttgtttttAAACAAAAACATTATTAAATGGTGAACCAAGTACAATTCTAAGTGTATTTTTTTAATAATAAAACATTAAACAAAATACATTGTGTTTGGTTTTTTTATTT‑A‑ATT‑TT‑‑G‑‑‑‑‑aaaaaaaaaa                                                                                                                  <  2:911157/121‑1 (MQ=255)
                 aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aaaaaaaaaaaa                                                                                                                >  1:3824024/1‑128 (MQ=255)
                  ttaGTTTAAAAAAAAATTTTAATAAATGCTGAACCAAGTAAAATGATAAGTGAAGTTTATTAATAATAAAATATTAAACCAAAAAAATTGTGTTTGGTTTTTTTATTT‑A‑ATT‑TT‑‑T‑‑‑‑‑aaaaaaaaaaaaa                                                                                                               <  2:3167026/126‑1 (MQ=255)
                    aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aaaaaaaaaaaaaaa                                                                                                             >  1:2277133/1‑128 (MQ=255)
                     gTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAAACAAATAAATTGTGTTTTATTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aaaaaaaaaaaaaaaa                                                                                                            >  1:2457348/1‑127 (MQ=255)
                        tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAAAACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑aaaaaaaaaaaaaataaaa                                                                                                         >  1:1974688/1‑123 (MQ=255)
                         caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAataata                                                                                                        >  1:962748/1‑128 (MQ=255)
                         caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAaaaata                                                                                                        >  1:1869652/1‑128 (MQ=255)
                           acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAataatata                                                                                                      >  1:1128038/1‑128 (MQ=255)
                            caaAAAGCTTAAGAAATGCTTTACAAATTAAAATGCTAAGTTTATTTTTTTAATAATAAATGTTTAAACCAAATAAATTGTGTTTGGTTTTTTTTTTT‑A‑ATT‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAataatataa                                                                                                     <  2:799711/128‑1 (MQ=255)
                            caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAaa‑aatataat                                                                                                    >  1:850910/1‑128 (MQ=255)
                              aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATAAAAtt                                                                                                   >  1:2973411/1‑128 (MQ=255)
                                aatattaataaATTCTTAAAAAATTACAATTTTAATTGAATTTTTTTAAAAATAAAATATTAAACCAAATAAATTTTGTTTGGTTTTTTTATTT‑A‑AAA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTg                                                                                                 <  1:3202925/123‑1 (MQ=255)
                                aagcttaatcaaTGCTGAACCAATTACAATTCTAATTGAATTTTATGAATAATAAAACATTAAACCAAATAAATTGTTTTTGGTTTTTTTATTT‑A‑AAA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTg                                                                                                 <  1:3621134/118‑1 (MQ=255)
                                aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑TAAAAAAAAAAAAATAAATATAATTTg                                                                                                 >  1:3532051/1‑128 (MQ=255)
                                   attaataaATGCTGAACCAATAAAAATGCAAAGTGAAGTTTTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑CTT‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCAt                                                                                              <  2:2691953/126‑1 (MQ=255)
                                   agTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTTAGTTTGTTTTATTTATAT‑A‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAAttaaaat                                                                                              >  1:1920961/1‑123 (MQ=255)
                                    gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACATAGTTTTTTTTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAAAATAAttaaaata                                                                                             >  2:528488/1‑122 (MQ=255)
                                     tAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAaataaaataaaataaaaa                                                                                             >  2:1999633/1‑120 (MQ=255)
                                     tAAGAAATGCTGAACCAAGTAAAATTCTAAGTGAAGTTTATTAATAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAc                                                                                            <  1:70229/128‑1 (MQ=255)
                                        taaaTGATGAAAAAATTATAATGTTAAGTTAATTTTATGAATAATAAAATATTAAACAAAATACATTGTGTTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                         <  2:3023859/127‑1 (MQ=255)
                                         aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAAAATAATTTTCATAAtata                                                                                        >  2:2624044/1‑128 (MQ=255)
                                          aaTGCTTAACCAATTACAATGTTTAGTGAAGTTGTTTAAAAATAAAAAAATAAACCAAATACATTTTTTTTGGTTTTTTTATTT‑A‑AAA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATaa                                                                                       <  1:233867/128‑1 (MQ=255)
                                          aaTGATGAACCATTTACATTGTTTTGTTTATTTTATTAATAAAAAAAGATAAAACAAAATAATTTGTGTTTGTTTTTTTTTTTT‑A‑ATA‑TTTAA‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                         <  1:761723/128‑1 (MQ=255)
                                           aTGCTGAACCAAGTACAATGATAAGTGAAGTTGATGAATAATAAAAGATTAAACCAACTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATATATATAATTTAAATAATATaaa                                                                                      >  2:3829600/1‑128 (MQ=255)
                                            tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATaaaa                                                                                     >  1:3373717/1‑128 (MQ=255)
                                            tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAAAATAATATACATACTATaaaaa                                                                                    >  2:1126226/1‑128 (MQ=255)
                                               ttaaCCAAGTTCTATGCTTAGTTAATTTGATGAATAAAAAAATATTAAACCAAATATATTGTTTTTGTTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAtt                                                                                 <  1:2902290/126‑1 (MQ=255)
                                                ttaCCAAGTAAAATGATTAGTTAAGTTTATGAATAATAAATTATTAAAACAAATACATTTTGTTTGGTTTTTTTTTTT‑A‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAtt                                                                                 <  2:1377416/126‑1 (MQ=255)
                                                   ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATATAATTTCAAAACAATAAAAAAtatta                                                                              >  2:1687779/1‑124 (MQ=255)
                                                    cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCAAAATATAAAAAATTGtt                                                                              >  1:3118065/1‑128 (MQ=255)
                                                     atgTAAAATGCTAAGTTAAGTTTATTAATAAAAAAAGATTAAAAAAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                          <  1:2687110/126‑1 (MQ=255)
                                                     aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAAAACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAAATATAATAAAATAAAAAAttatata                                                                            >  1:1699873/1‑123 (MQ=255)
                                                      attACAATGCTATGTGAAGTTGATTAATAAAAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGttttt                                                                           <  1:1272185/126‑1 (MQ=255)
                                                      aGTACATTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTTTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTGattt                                                                            >  1:2569117/1‑128 (MQ=255)
                                                       gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTCATACTATAAAAAATTTTTTTTc                                                                          >  1:3698018/1‑128 (MQ=255)
                                                             tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAAAATAAATTGAATACTATAAAAAATTTTTTTTaaaaaa                                                                     >  2:3511600/1‑126 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAta                                                               >  1:3444159/1‑127 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACAAAAAAAAATTTTTTTTCAAATAAGTAtt                                                               >  2:1296939/1‑128 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATATAATTTACAAAAAAAAAAAAATTTTTTTTCAAATAattatt                                                               >  2:1036993/1‑128 (MQ=255)
                                                                   gttaattttattaataaaAAAATATTAAACAAAAAAAATTTTTTTTGTTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                              <  1:1045316/116‑1 (MQ=255)
                                                                       attttttttataaaaAAATATTAAAACAAAAAAATTTGTTTTGGTTTTTTTATTT‑A‑AAATTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAgg                                                           <  2:2277133/119‑1 (MQ=255)
                                                                         tttattaataaaAAAATATTAAAACAAATAAATTTTTTTTTTTTTTTTTATTTAA‑ATT‑TT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                         <  1:2388623/122‑1 (MQ=255)
                                                                           tattaataatAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑ATA‑TTTAA‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGt                                                        <  1:90367/124‑1 (MQ=255)
                                                                             ttaataatAAAATTTTAAACAAAATACATTGTTTTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAtt                                                   <  2:745023/126‑1 (MQ=255)
                                                                             tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATATTTTAAATACTATAAAAAATTATTTTTCAAATAATTATACAGGAGaaaa                                                     >  2:3890840/1‑128 (MQ=255)
                                                                             tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATTAAATTTGGATAAATAAAAAAATTTTTTTTAAAAAAAAATTTAATGAGTAAAt                                                    >  1:3888317/1‑128 (MQ=255)
                                                                               aataatAAAATTTTAAACAAAATAAATTGTTTTTGGTTTTTTTTTTT‑A‑ATT‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAttt                                                  <  1:1572090/128‑1 (MQ=255)
                                                                                ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAAAAATATAAAAAATTTTTTTTAAAATAATTATTCAGAATTAAATTTa                                                 >  2:3569240/1‑128 (MQ=255)
                                                                                ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaaa                                               >  2:3443872/1‑128 (MQ=255)
                                                                                    taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAGAAAAAAAAATA‑AAT‑TAATTTTCAAAATATAAAAAATTTTTTTTCAAAAAACTATTCATGAGTAAATTTAAAAAAc                                           >  1:203298/1‑128 (MQ=255)
                                                                                      aaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATAAAAAATTTTTTTAAAAATAATTATAAATTATTAAATTTAAAAAAc                                           >  2:1813957/1‑128 (MQ=255)
                                                                                      aaaGATTAAACAAAATAAATTGTTTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAAc                                           <  1:1375497/128‑1 (MQ=255)
                                                                                         taTTATACAAAATAAATTGTTTTTTTTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                        <  2:2868106/127‑1 (MQ=255)
                                                                                         gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATTTAATTTGAATACTTTAAAAAATTTTTTTTAAAATAATTTTTAAGGATTAATTTTAAAAAACCaa                                        >  1:642681/1‑128 (MQ=255)
                                                                                          aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTAAAAAAATTATTAATGAGTAAATTTAAAAAACAAag                                       >  2:117755/1‑128 (MQ=255)
                                                                                          aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTTAATAAAATAAAAAATTTTTTTTAAAATAATAATTAAATATAAAATATaaaaaaaaaaa                                       >  2:1560844/1‑123 (MQ=255)
                                                                                          aTTAAACAAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑CAT‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:1784122/128‑1 (MQ=255)
                                                                                           ttAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:1327095/128‑1 (MQ=255)
                                                                                           ttAAACCAAATAAATTGTGTTTGGTTTTTTTTTTT‑T‑ATATTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:2147346/128‑1 (MQ=255)
                                                                                             aaaCCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTCATACTAAAAAAAATTGTTTTTAAAATAATTATTCAGTAGAAAATTTaaaaaaaaaataat                                    >  1:3254411/1‑120 (MQ=255)
                                                                                              aaCCAAATAAATTGTGTTTGGTTTTTTTTTTT‑A‑CT‑‑TT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTta                                  <  2:3773754/128‑1 (MQ=255)
                                                                                               caaaataataTTGTTTTTGTTTTTTTTTTTT‑A‑‑TA‑TT‑‑‑‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                <  2:1626815/119‑1 (MQ=255)
                                                                                                ccAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATGATTAAATTTaaaaaaaaaatatttat                                 >  1:567338/1‑117 (MQ=255)
                                                                                                ccAAATACATTGTGTTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                 <  1:3945991/128‑1 (MQ=255)
                                                                                                aaaaataaatTGTTTTTTGTTTTTTATTTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAATTAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtat                                 <  2:1935178/126‑1 (MQ=255)
                                                                                                  aaataaatTTTGTTTTGTTTTTTTATTT‑A‑AT‑‑TT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaaa                              <  2:2058110/128‑1 (MQ=255)
                                                                                                  aaaTACATTTTGTTTGTTTTTTTTATTT‑ATTTT‑TT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                <  2:2772005/128‑1 (MQ=255)
                                                                                                  aaaTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTTAATAATATAAAAAATTTTTTATAAAAAAAGTATTAAAAATTAAATTAAAAAAACAAAAAAtaataa                               >  2:2137307/1‑128 (MQ=255)
                                                                                                   aaTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATT‑TTTTTTAAAAAAATAATAAATAATTAATTTAAAAAAACAAAAATtaataat                             >  1:100375/1‑123 (MQ=255)
                                                                                                    aaaCATTGTTTTTGTTTTTTTTATTT‑T‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaact                             <  2:2379127/126‑3 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                             >  1:3312843/1‑128 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATTATTAAATTTAAAAAACAAAAATTTTTaaag                             >  1:1499105/1‑127 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATATTTTAAAAAAAAAAAAAAATTATTTTAAAAATATTTATAAATGATTAAATTTAAAAAACAAAAATATATAAAt                             >  2:3228409/1‑128 (MQ=255)
                                                                                                      aCATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAAAAAAAAAAAAAAAAAAAAAAATATAATTTAAAAAAATAAAAAAATTTTTTTAAAAATAATAATTAATAATTAAATTTAAAAAACAAAAATTtata                                >  1:276451/1‑128 (MQ=255)
                                                                                                        ttttttttttGTTTTTTTATAT‑T‑ATT‑TT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                         <  1:2805409/122‑1 (MQ=255)
                                                                                                        aTTGTGTTTGTTTTTTTTATTT‑A‑TTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                         <  1:2620664/128‑1 (MQ=255)
                                                                                                        aTTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGGTAATTTAAAAAACCAAGAGTTATAAATCTTgg                        >  1:2510567/1‑128 (MQ=255)
                                                                                                        aTTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAAATTATTAATTATTAAATTTAAAAAACAAATATTTATAAATAttta                        >  2:651134/1‑126 (MQ=255)
                                                                                                         atgtaTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACAAAGGTTTATAAATATTgt                        >  1:1218073/2‑127 (MQ=255)
                                                                                                          tgtaTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTAAGAAGTAAATTTAAAAAACAAAGATTTATAAATCTTGGtt                      >  2:2454582/1‑128 (MQ=255)
                                                                                                          tgtaTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑‑AAAAAAAAAAAAAATAATAAAATTTACATAAAAAAAAAAATATTTTATCAAATAAGTATTCAAAATTAAATTTAAAAAACAAATATTTAaaaaaatttgtt                      >  2:1496783/1‑120 (MQ=255)
                                                                                                              tttGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAATTATTCAGTAGAAAATTTAAAAAACAAATATTAATAAATATTTGttttt                   >  2:3110247/1‑128 (MQ=255)
                                                                                                              tttGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAAAATATTTTGCATAATATAAAAAATTTTTTTTAAAATAATTATAAAGGATTAAATTTAAAAAACAATCATTTATAAATCTTGTtttta                   >  1:3775542/1‑127 (MQ=255)
                                                                                                               ttGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAATTTTAAAAAACAAAGAGTTATAAATATTGGttttt                   >  2:2213353/1‑128 (MQ=255)
                                                                                                               ttGGTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                  <  2:3709557/128‑1 (MQ=255)
                                                                                                                tgttttttttATTT‑A‑CTA‑TT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAAAAATAAAAATTAAATAAAAAAAAAAAATAAATTTAAAATAAATATTAACTAGTAAATTTAAAAAACAAATATTTTAAAATATTAGttttatt                 >  2:3957472/4‑125 (MQ=255)
                                                                                                                tGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAAAAATTATTCAGGTGTAAATTTAAAAAACCAAGTGTTTTAAATAAGGGtttttgt                 >  2:2967915/1‑126 (MQ=255)
                                                                                                                 tgTTTTTTTTTTT‑T‑AAA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                <  2:2548727/127‑1 (MQ=255)
                                                                                                                    ttttttATTT‑A‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta             <  1:145470/128‑1 (MQ=255)
                                                                                                                      ttttATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAAGTATTAAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata           >  1:2204992/1‑128 (MQ=255)
                                                                                                                      ttttATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAA‑AAAAAAATTTTCAAAAAATAAAAAAATTTTTTTCAAAAAAATATTAATTATTAAATTTAAAAAAACAAAAATTATAAAAAATTTTTTTTTTTTTatat          >  2:3636815/1‑128 (MQ=255)
                                                                                                                       tttattt‑a‑ATA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat          <  1:427340/128‑1 (MQ=255)
                                                                                                                         tattt‑a‑ata‑tt‑‑t‑‑‑‑‑aaAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtatta        <  1:303173/128‑1 (MQ=255)
                                                                                                                          attt‑a‑ata‑tt‑‑t‑‑‑‑‑aatAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattat       <  1:513927/128‑1 (MQ=255)
                                                                                                                            tt‑a‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattatta     <  2:1869652/128‑1 (MQ=255)
                                                                                                                             t‑a‑CTA‑TT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat    <  2:3315959/128‑1 (MQ=255)
                                                                                                                             t‑a‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATAATTAAATTTAAAAAACAAAAATTTATAAATATTTGTTTTTTTTTTTtattattat    >  2:1750085/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                                       
TCATTCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTT  >  CP016816/34813‑35067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑