Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9400CA30.5% 3108.4 / 230.0 1593intergenic (+44/+122)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base C (926/144);  new base A (25/444);  total (951/642)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1611 total aligned reads displayed.

TCATTCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTT  >  CP016816/34813‑35067
                                                                                                                                 |                                                                                                                                       
       ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑aa                                                                                                                          >  2:1240167/1‑128 (MQ=255)
              tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTGTGTTTTGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑aaaaaaaaa                                                                                                                   >  1:1648504/1‑128 (MQ=255)
               ttttgtttttAAACAAAAACATTATTAAATGGTGAACCAAGTACAATTCTAAGTGTATTTTTTTAATAATAAAACATTAAACAAAATACATTGTGTTTGGTTTTTTTATTTAATTTT‑‑G‑‑‑‑‑aaaaaaaaaa                                                                                                                  <  2:911157/121‑1 (MQ=255)
                 aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑aaaaaaaaaaaa                                                                                                                >  1:3824024/1‑128 (MQ=255)
                  ttaGTTTAAAAAAAAATTTTAATAAATGCTGAACCAAGTAAAATGATAAGTGAAGTTTATTAATAATAAAATATTAAACCAAAAAAATTGTGTTTGGTTTTTTTATTTAATTTT‑‑T‑‑‑‑‑aaaaaaaaaaaaa                                                                                                               <  2:3167026/126‑1 (MQ=255)
                    aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑aaaaaaaaaaaaaaa                                                                                                             >  1:2277133/1‑128 (MQ=255)
                     gTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAAACAAATAAATTGTGTTTTATTTTTTTATTTACTATT‑‑G‑‑‑‑‑aaaaaaaaaaaaaaaa                                                                                                            >  1:2457348/1‑127 (MQ=255)
                        tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAAAACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑aaaaaaaaaaaaaataaaa                                                                                                         >  1:1974688/1‑123 (MQ=255)
                         caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAataata                                                                                                        >  1:962748/1‑128 (MQ=255)
                         caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAaaaata                                                                                                        >  1:1869652/1‑128 (MQ=255)
                           acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAataatata                                                                                                      >  1:1128038/1‑128 (MQ=255)
                            caaAAAGCTTAAGAAATGCTTTACAAATTAAAATGCTAAGTTTATTTTTTTAATAATAAATGTTTAAACCAAATAAATTGTGTTTGGTTTTTTTTTTTAATTTT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAataatataa                                                                                                     <  2:799711/128‑1 (MQ=255)
                            caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAaaaatataat                                                                                                    >  1:850910/1‑128 (MQ=255)
                              aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATAAAAtt                                                                                                   >  1:2973411/1‑128 (MQ=255)
                                aatattaataaATTCTTAAAAAATTACAATTTTAATTGAATTTTTTTAAAAATAAAATATTAAACCAAATAAATTTTGTTTGGTTTTTTTATTTAAAATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTg                                                                                                 <  1:3202925/123‑1 (MQ=255)
                                aagcttaatcaaTGCTGAACCAATTACAATTCTAATTGAATTTTATGAATAATAAAACATTAAACCAAATAAATTGTTTTTGGTTTTTTTATTTAAAATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTg                                                                                                 <  1:3621134/118‑1 (MQ=255)
                                aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑TAAAAAAAAAAAAATAAATATAATTTg                                                                                                 >  1:3532051/1‑128 (MQ=255)
                                   attaataaATGCTGAACCAATAAAAATGCAAAGTGAAGTTTTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTTACTTTT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCAt                                                                                              <  2:2691953/126‑1 (MQ=255)
                                   agTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTTAGTTTGTTTTATTTATATACTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAAttaaaat                                                                                              >  1:1920961/1‑123 (MQ=255)
                                    gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACATAGTTTTTTTTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAAAATAAttaaaata                                                                                             >  2:528488/1‑122 (MQ=255)
                                     tAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAaataaaataaaataaaaa                                                                                             >  2:1999633/1‑120 (MQ=255)
                                     tAAGAAATGCTGAACCAAGTAAAATTCTAAGTGAAGTTTATTAATAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAc                                                                                            <  1:70229/128‑1 (MQ=255)
                                        taaaTGATGAAAAAATTATAATGTTAAGTTAATTTTATGAATAATAAAATATTAAACAAAATACATTGTGTTTGGTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                         <  2:3023859/127‑1 (MQ=255)
                                         aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAAAATAATTTTCATAAtata                                                                                        >  2:2624044/1‑128 (MQ=255)
                                          aaTGCTTAACCAATTACAATGTTTAGTGAAGTTGTTTAAAAATAAAAAAATAAACCAAATACATTTTTTTTGGTTTTTTTATTTAAAATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATaa                                                                                       <  1:233867/128‑1 (MQ=255)
                                          aaTGATGAACCATTTACATTGTTTTGTTTATTTTATTAATAAAAAAAGATAAAACAAAATAATTTGTGTTTGTTTTTTTTTTTTAATATTTAA‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                         <  1:761723/128‑1 (MQ=255)
                                           aTGCTGAACCAAGTACAATGATAAGTGAAGTTGATGAATAATAAAAGATTAAACCAACTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATATATATAATTTAAATAATATaaa                                                                                      >  2:3829600/1‑128 (MQ=255)
                                            tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATaaaa                                                                                     >  1:3373717/1‑128 (MQ=255)
                                            tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAAAATAATATACATACTATaaaaa                                                                                    >  2:1126226/1‑128 (MQ=255)
                                               ttaaCCAAGTTCTATGCTTAGTTAATTTGATGAATAAAAAAATATTAAACCAAATATATTGTTTTTGTTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAtt                                                                                 <  1:2902290/126‑1 (MQ=255)
                                                ttaCCAAGTAAAATGATTAGTTAAGTTTATGAATAATAAATTATTAAAACAAATACATTTTGTTTGGTTTTTTTTTTTACTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAtt                                                                                 <  2:1377416/126‑1 (MQ=255)
                                                   ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATATAATTTCAAAACAATAAAAAAtatta                                                                              >  2:1687779/1‑124 (MQ=255)
                                                    cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCAAAATATAAAAAATTGtt                                                                              >  1:3118065/1‑128 (MQ=255)
                                                     atgTAAAATGCTAAGTTAAGTTTATTAATAAAAAAAGATTAAAAAAAATAAATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                          <  1:2687110/126‑1 (MQ=255)
                                                     aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAAAACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAAATATAATAAAATAAAAAAttatata                                                                            >  1:1699873/1‑123 (MQ=255)
                                                      attACAATGCTATGTGAAGTTGATTAATAAAAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGttttt                                                                           <  1:1272185/126‑1 (MQ=255)
                                                      aGTACATTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTTTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTGattt                                                                            >  1:2569117/1‑128 (MQ=255)
                                                       gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTCATACTATAAAAAATTTTTTTTc                                                                          >  1:3698018/1‑128 (MQ=255)
                                                             tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAAAATAAATTGAATACTATAAAAAATTTTTTTTaaaaaa                                                                     >  2:3511600/1‑126 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAta                                                               >  1:3444159/1‑127 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACAAAAAAAAATTTTTTTTCAAATAAGTAtt                                                               >  2:1296939/1‑128 (MQ=255)
                                                                  aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATATAATTTACAAAAAAAAAAAAATTTTTTTTCAAATAattatt                                                               >  2:1036993/1‑128 (MQ=255)
                                                                   gttaattttattaataaaAAAATATTAAACAAAAAAAATTTTTTTTGTTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                              <  1:1045316/116‑1 (MQ=255)
                                                                       attttttttataaaaAAATATTAAAACAAAAAAATTTGTTTTGGTTTTTTTATTTAAAATTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAgg                                                           <  2:2277133/119‑1 (MQ=255)
                                                                         tttattaataaaAAAATATTAAAACAAATAAATTTTTTTTTTTTTTTTTATTTAAATTTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                         <  1:2388623/122‑1 (MQ=255)
                                                                           tattaataatAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTTAATATTTAA‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGt                                                        <  1:90367/124‑1 (MQ=255)
                                                                             ttaataatAAAATTTTAAACAAAATACATTGTTTTTGGTTTTTTTATTTAATATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAtt                                                   <  2:745023/126‑1 (MQ=255)
                                                                             tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATATTTTAAATACTATAAAAAATTATTTTTCAAATAATTATACAGGAGaaaa                                                     >  2:3890840/1‑128 (MQ=255)
                                                                             tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAATTAAATTTGGATAAATAAAAAAATTTTTTTTAAAAAAAAATTTAATGAGTAAAt                                                    >  1:3888317/1‑128 (MQ=255)
                                                                               aataatAAAATTTTAAACAAAATAAATTGTTTTTGGTTTTTTTTTTTAATTTT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAttt                                                  <  1:1572090/128‑1 (MQ=255)
                                                                                ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAAAAATATAAAAAATTTTTTTTAAAATAATTATTCAGAATTAAATTTa                                                 >  2:3569240/1‑128 (MQ=255)
                                                                                ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaaa                                               >  2:3443872/1‑128 (MQ=255)
                                                                                    taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAGAAAAAAAAATAAATTAATTTTCAAAATATAAAAAATTTTTTTTCAAAAAACTATTCATGAGTAAATTTAAAAAAc                                           >  1:203298/1‑128 (MQ=255)
                                                                                      aaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATAAAAAATTTTTTTAAAAATAATTATAAATTATTAAATTTAAAAAAc                                           >  2:1813957/1‑128 (MQ=255)
                                                                                      aaaGATTAAACAAAATAAATTGTTTTTGGTTTTTTTATTTACTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAAc                                           <  1:1375497/128‑1 (MQ=255)
                                                                                         taTTATACAAAATAAATTGTTTTTTTTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                        <  2:2868106/127‑1 (MQ=255)
                                                                                         gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATTTAATTTGAATACTTTAAAAAATTTTTTTTAAAATAATTTTTAAGGATTAATTTTAAAAAACCaa                                        >  1:642681/1‑128 (MQ=255)
                                                                                          aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTAAAAAAATTATTAATGAGTAAATTTAAAAAACAAag                                       >  2:117755/1‑128 (MQ=255)
                                                                                          aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTTAATAAAATAAAAAATTTTTTTTAAAATAATAATTAAATATAAAATATaaaaaaaaaaa                                       >  2:1560844/1‑123 (MQ=255)
                                                                                          aTTAAACAAAATAAATTGTGTTTGGTTTTTTTATTTACATTT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:1784122/128‑1 (MQ=255)
                                                                                           ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:1327095/128‑1 (MQ=255)
                                                                                           ttAAACCAAATAAATTGTGTTTGGTTTTTTTTTTTTATATTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                       <  1:2147346/128‑1 (MQ=255)
                                                                                             aaaCCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTCATACTAAAAAAAATTGTTTTTAAAATAATTATTCAGTAGAAAATTTaaaaaaaaaataat                                    >  1:3254411/1‑120 (MQ=255)
                                                                                              aaCCAAATAAATTGTGTTTGGTTTTTTTTTTTACTTT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTta                                  <  2:3773754/128‑1 (MQ=255)
                                                                                               caaaataataTTGTTTTTGTTTTTTTTTTTTATATT‑‑‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                <  2:1626815/119‑1 (MQ=255)
                                                                                                ccAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATGATTAAATTTaaaaaaaaaatatttat                                 >  1:567338/1‑117 (MQ=255)
                                                                                                ccAAATACATTGTGTTTGGTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                 <  1:3945991/128‑1 (MQ=255)
                                                                                                aaaaataaatTGTTTTTTGTTTTTTATTTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAATTAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtat                                 <  2:1935178/126‑1 (MQ=255)
                                                                                                  aaataaatTTTGTTTTGTTTTTTTATTTAATTT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaaa                              <  2:2058110/128‑1 (MQ=255)
                                                                                                  aaaTACATTTTGTTTGTTTTTTTTATTTATTTTTT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                <  2:2772005/128‑1 (MQ=255)
                                                                                                  aaaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTTAATAATATAAAAAATTTTTTATAAAAAAAGTATTAAAAATTAAATTAAAAAAACAAAAAAtaataa                               >  2:2137307/1‑128 (MQ=255)
                                                                                                   aaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTTTTTTTAAAAAAATAATAAATAATTAATTTAAAAAAACAAAAATtaataat                             >  1:100375/1‑123 (MQ=255)
                                                                                                    aaaCATTGTTTTTGTTTTTTTTATTTTATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaact                             <  2:2379127/126‑3 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                             >  1:3312843/1‑128 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATTATTAAATTTAAAAAACAAAAATTTTTaaag                             >  1:1499105/1‑127 (MQ=255)
                                                                                                    aTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAATATTTTAAAAAAAAAAAAAAATTATTTTAAAAATATTTATAAATGATTAAATTTAAAAAACAAAAATATATAAAt                             >  2:3228409/1‑128 (MQ=255)
                                                                                                      aCATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAAAAAAAAATATAATTTAAAAAAATAAAAAAATTTTTTTAAAAATAATAATTAATAATTAAATTTAAAAAACAAAAATTtata                                >  1:276451/1‑128 (MQ=255)
                                                                                                        ttttttttttGTTTTTTTATATTATTTT‑‑T‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                         <  1:2805409/122‑1 (MQ=255)
                                                                                                        aTTGTGTTTGTTTTTTTTATTTATTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                         <  1:2620664/128‑1 (MQ=255)
                                                                                                        aTTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGGTAATTTAAAAAACCAAGAGTTATAAATCTTgg                        >  1:2510567/1‑128 (MQ=255)
                                                                                                        aTTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAAATTATTAATTATTAAATTTAAAAAACAAATATTTATAAATAttta                        >  2:651134/1‑126 (MQ=255)
                                                                                                         atgtaTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACAAAGGTTTATAAATATTgt                        >  1:1218073/2‑127 (MQ=255)
                                                                                                          tgtaTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTAAGAAGTAAATTTAAAAAACAAAGATTTATAAATCTTGGtt                      >  2:2454582/1‑128 (MQ=255)
                                                                                                          tgtaTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAATAATAAAATTTACATAAAAAAAAAAATATTTTATCAAATAAGTATTCAAAATTAAATTTAAAAAACAAATATTTAaaaaaatttgtt                      >  2:1496783/1‑120 (MQ=255)
                                                                                                              tttGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAATTATTCAGTAGAAAATTTAAAAAACAAATATTAATAAATATTTGttttt                   >  2:3110247/1‑128 (MQ=255)
                                                                                                              tttGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAAAATATTTTGCATAATATAAAAAATTTTTTTTAAAATAATTATAAAGGATTAAATTTAAAAAACAATCATTTATAAATCTTGTtttta                   >  1:3775542/1‑127 (MQ=255)
                                                                                                               ttGGTTTTTTTATTTACTATT‑‑GA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAATTTTAAAAAACAAAGAGTTATAAATATTGGttttt                   >  2:2213353/1‑128 (MQ=255)
                                                                                                               ttGGTTTTTTTATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                  <  2:3709557/128‑1 (MQ=255)
                                                                                                                tgttttttttATTTACTATT‑‑A‑‑‑‑‑AAAAAAAAAAAAAAAAAATAAAAATTAAATAAAAAAAAAAAATAAATTTAAAATAAATATTAACTAGTAAATTTAAAAAACAAATATTTTAAAATATTAGttttatt                 >  2:3957472/4‑125 (MQ=255)
                                                                                                                tGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTCAAAAAATTATTCAGGTGTAAATTTAAAAAACCAAGTGTTTTAAATAAGGGtttttgt                 >  2:2967915/1‑126 (MQ=255)
                                                                                                                 tgTTTTTTTTTTTTAAATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                <  2:2548727/127‑1 (MQ=255)
                                                                                                                    ttttttATTTAATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta             <  1:145470/128‑1 (MQ=255)
                                                                                                                      ttttATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAAGTATTAAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata           >  1:2204992/1‑128 (MQ=255)
                                                                                                                      ttttATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAAAAAAAAATTTTCAAAAAATAAAAAAATTTTTTTCAAAAAAATATTAATTATTAAATTTAAAAAAACAAAAATTATAAAAAATTTTTTTTTTTTTatat          >  2:3636815/1‑128 (MQ=255)
                                                                                                                       tttatttaATATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat          <  1:427340/128‑1 (MQ=255)
                                                                                                                         tatttaatatt‑‑t‑‑‑‑‑aaAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtatta        <  1:303173/128‑1 (MQ=255)
                                                                                                                          atttaatatt‑‑t‑‑‑‑‑aatAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattat       <  1:513927/128‑1 (MQ=255)
                                                                                                                            ttaCTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattatta     <  2:1869652/128‑1 (MQ=255)
                                                                                                                             taCTATT‑‑T‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat    <  2:3315959/128‑1 (MQ=255)
                                                                                                                             taCTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATAATTAAATTTAAAAAACAAAAATTTATAAATATTTGTTTTTTTTTTTtattattat    >  2:1750085/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                                       
TCATTCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTT  >  CP016816/34813‑35067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: