Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9450GT30.7% 2283.4 / inf 1597intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base G (858/114);  new base T (51/379);  total (932/665)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1616 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072
                                                                                                                                |                                                                                                                                    
      ttcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTTATGAATAATAAAAGATTAAACCAAATACATTCTGTTTGGTTATTTTATTTACTA‑TTG‑‑‑a‑aaaaa                                                                                                                            >  1:328034/1‑128 (MQ=255)
        cttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTCTGTTTGGTATTATTATTTACTA‑TTG‑‑‑a‑aaaaaaa                                                                                                                          >  2:3616066/1‑128 (MQ=255)
         tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑a‑aaaaaaaa                                                                                                                         >  2:3249988/1‑128 (MQ=255)
          ttttgtttttAAACAAAAACATTATTAAATGGTGAACCAAGTACAATTCTAAGTGTATTTTTTTAATAATAAAACATTAAACAAAATACATTGTGTTTGGTTTTTTTATTTAATT‑TTG‑‑‑a‑aaaaaaaaa                                                                                                                        <  2:911157/121‑1 (MQ=255)
              gattttCAAAAAAAATAGTAAGAAATGCTTAAACAAGTACAATGCTAAGTGAAGTTGTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTTAATA‑TTG‑‑‑a‑aaaaaaaaaaaaa                                                                                                                    <  1:1375424/125‑1 (MQ=255)
              gAGTTTCAACAAAAATAGTAATAAATCCTTAACCAATTACAATGCTATGTGAATTTTATTAATAAAAAAACATAAAACCAAAAACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑a‑aaaaaaaaaaaaa                                                                                                                    <  1:2689599/128‑1 (MQ=255)
                gTTTCAACAAAAATAGTAAGAAATGGTGAACCAAGTACAATTCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTT‑‑‑A‑AAAAAAAAAAAAaat                                                                                                                  <  1:3041548/128‑1 (MQ=255)
                 tttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTTATTAATAATAAAAGATTAAACCAAATAAATTGTTAATATATTATATATTTACTA‑TTG‑‑‑a‑aaaaaaaaaaaaaaaa                                                                                                                 >  2:1899928/1‑126 (MQ=255)
                  ttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑a‑aaaaaaaaaaaaaaa‑aa                                                                                                               >  2:1185985/1‑128 (MQ=255)
                   tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTGTTTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAaat‑aat                                                                                                              >  2:2599537/1‑128 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑a‑aaaaaaaaaaaaaaataat                                                                                                              >  1:3799650/1‑123 (MQ=255)
                      acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTCTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑a‑aaaaaaaaaaaaaaa‑aaaaaa                                                                                                           >  1:72044/1‑124 (MQ=255)
                       caaAAAGCTTAAGAAATGCTTTACAAATTAAAATGCTAAGTTTATTTTTTTAATAATAAATGTTTAAACCAAATAAATTGTGTTTGGTTTTTTTTTTTAATT‑TTT‑‑‑A‑AAAAAAAAAAAAAat‑aatataa                                                                                                          <  2:799711/128‑1 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAaa‑aatataat                                                                                                         >  1:1267749/1‑128 (MQ=255)
                         aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAAtt                                                                                                        >  1:3897281/1‑128 (MQ=255)
                           aattgTAATAAATTGTTAAACAATTAAAATTATAATTGAATTTTATTAATAATAAAATTTTAAAAAAAATACATTTTTTTTGGTTTTTTTTTTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTg                                                                                                      <  2:3152004/124‑1 (MQ=255)
                               ttAAGAAATGATTAACCAAGTACAATGATAATTGATGTTTTTTAAAAATAAAATATTAATCCAAATACATTGTTTTGGGTTTTTTTATTTAATA‑TTG‑‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATAc                                                                                                 <  1:1317640/127‑1 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AATATATTTTGCAt                                                                                                   >  1:772116/1‑128 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAAttttaata                                                                                                  >  1:1921911/1‑123 (MQ=255)
                                  ctatttGCTTAACCAAGTAGAATGGTAAGTGTAGTTTTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTTACTA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACtat                                                                                              <  2:3726660/123‑1 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTGAATaaaat                                                                                              >  1:3392980/1‑124 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAAtttaaataaaaaa                                                                                             >  2:1572090/1‑118 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAA‑‑AATTTATTTTGAATACTATaa                                                                                            >  1:435749/1‑128 (MQ=255)
                                    aaaTGCTGAACAAATTAAAATGTTAAGTTATGTTTTTTAATAATAAAATTTTAAACAAAATACATTGTGTTTGGTTTTTTTTTTTATTATTTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACtat                                                                                              <  2:1263312/128‑1 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AATATAATTTTAATAATAaaaa                                                                                           >  1:1124237/1‑128 (MQ=255)
                                         cTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAATTTGCATACTATaaaaaa                                                                                        >  1:3637474/1‑128 (MQ=255)
                                          ttaaCCAATTACAATGATAAGTGAATTTTATTAATAATAAAATATTAAACCAAATAAATTTTTTTTGGTTTTTTTATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAAt                                                                                       <  2:1319146/126‑1 (MQ=255)
                                          tGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAATTTGAATACTAAAAAAAAt                                                                                       >  1:1502696/1‑128 (MQ=255)
                                               cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATTTTATTTGAATAATATAATAAATTGttt                                                                                  >  1:299228/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAAATTGAATACTATAAAAAAttttatt                                                                                 >  1:2147456/1‑123 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAAAACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AAAATAAATATAATAAAATAAAAAAttatata                                                                                 >  1:1699873/1‑123 (MQ=255)
                                                 aGTACATTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTTTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTGattt                                                                                 >  1:2569117/1‑128 (MQ=255)
                                                 aGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTTTGTTTGGTTTTTTTATTTACTA‑TAT‑‑‑A‑AAAAAAAAAAAAAATAAATATAATTTAAATAAAATaaaaaaaagtaat                                                                                 >  2:1648388/1‑121 (MQ=255)
                                                  tttcattGCTAAGTGAAGTTGATGAATAATAAAATATTAAAACAAATACATTTTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  1:2343191/122‑1 (MQ=255)
                                                  ttACAATTCTATGTTAATTTGATTAAAAATAAAAGATAAAAACAAATACATTGTGTTTGGTTTTTTTATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  1:3956369/127‑1 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGAA‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATAATTAAAAAATTTGtttt                                                                                 >  1:3843733/1‑128 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAATTTGAATACTATAAAAAATTGTTTTTc                                                                               >  2:1403802/1‑128 (MQ=255)
                                                   tACAATTGTAAGTGACTTTTATGAATAATAAAATATTAAACCAAATACTTTGTGTTTGGTTTTTTTTTTTAATATTTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  2:3045337/128‑1 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTTAATAATATAAAAAATTTTTTTTAAAATa                                                                          >  1:597311/1‑128 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTTAATAATATAAAAAATTTTTTTTAAAATaa                                                                         >  1:2395343/1‑128 (MQ=255)
                                                         gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTACAAAAAAAAAAAAATTTTTTTAAAAATaaa                                                                        >  2:1072422/1‑127 (MQ=255)
                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGAAAAGTATAAAAAATTTTTTTTAAAATAAGt                                                                       >  2:1515857/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AAAAAAAATTTAATAATAAAAAAAATTGTATTTAAAAAAATTa                                                                      >  2:3521845/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTTAATTATATAAAAAATTTTTTTTAAAATAATTAt                                                                     >  1:3460864/1‑128 (MQ=255)
                                                              gttaattttattaataaaAAAATATTAAACAAAAAAAATTTTTTTTGTTTTTTTTATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  1:1045316/116‑1 (MQ=255)
                                                              gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AAAAAAATTTAAAAAAAATAAAAAAATATTTTTAAAAAAATTAta                                                                    >  2:2352548/1‑127 (MQ=255)
                                                                ttatgttatgaAAAATAAAATAATAAATCAAATAAATTTTGTTTGTTTTTTTATTTTAATT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAATTTGTTTTTCAAATAAGTATTCAg                                                                 <  1:2765493/121‑1 (MQ=255)
                                                                gAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑‑‑‑AAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAattattaatta                                                               >  2:2419484/1‑123 (MQ=255)
                                                                 aaGTTTATTAAAAATAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTTAATA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  1:1879716/128‑1 (MQ=255)
                                                                 aaGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTCAAATAattattaat                                                                 >  2:559318/1‑125 (MQ=255)
                                                                  tttttattaattatAAAATATAAAAAAAAAAAAATTGTGTTTGTTTTTTTTATTTAATT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  1:1784410/120‑1 (MQ=255)
                                                                   tttGAAGAATAATAAATTATTAAACAAATAAAATTGTGTTTGGTTTTTTTTTTTAATA‑TTG‑‑‑A‑AAAAAAAAAAATAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                              <  2:1143161/127‑1 (MQ=255)
                                                                     ttattaataatAAAATATTAATCAAAATAAATTGTTTTTGTTTTTTTTATTTAAT‑‑TTT‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  1:2050817/123‑1 (MQ=255)
                                                                      tattaaaaataaAATTTTAAATAAAATAAATTTTGTTTGGTTTTTTTATTAAAAT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  2:3897281/121‑1 (MQ=255)
                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AATAAAATTTCAATAATATAAAAAAATTTTTTAAAAATAATTaaaaataaataaa                                                          >  1:523626/1‑116 (MQ=255)
                                                                        ttaataatAAAATTTTAAACAAAATACATTGTTTTTGGTTTTTTTATTTAATA‑TTG‑‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAtt                                                        <  2:745023/126‑1 (MQ=255)
                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AATAAAATTTAAAAACTATAAAAAATTATTTTTAAAATAATTATTAATGATTAAAt                                                         >  2:197661/1‑128 (MQ=255)
                                                                         gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAt                                                         >  1:996558/1‑128 (MQ=255)
                                                                         gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTGCATACTATAAAAAATATTTTTTAAAATAATTATTAAGTAGTAAAtt                                                        >  1:2207107/1‑128 (MQ=255)
                                                                           ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGAA‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATGAGTAAAtt                                                        >  1:3216174/1‑128 (MQ=255)
                                                                           ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTGCATAATATAAAAAATTATTTTTCAAAAAATTATTCaataactaaatag                                                      >  2:3662647/1‑116 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGAAAA‑AAAAAAAAAAAAAAT‑AATAAAAATTTAATAATAAAAAAAATTTTTATTAAAATAAAAATTAAGAATTAAAttt                                                       >  1:919491/1‑128 (MQ=255)
                                                                               taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAA‑AAAATAATTTGCAAAAAAAAAAAAATGTTTTTTCAAAAAATTATAAATTAATAAATTTaaaa                                                   >  2:248933/1‑128 (MQ=255)
                                                                                   ataTTAAAACAAATAAATTTTGTTTGGTTTTTTTTTTTAAAA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                             <  1:3157361/126‑1 (MQ=255)
                                                                                    gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AATATAATTTTCATACTATAAAAATTTTTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAAACaa                                             >  2:202720/1‑128 (MQ=255)
                                                                                    gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AAAATAATTTAAATAATATAAAAAATTTATATAAAAATAAATTTTAATGAATAAATTTAAAAAACaaa                                             >  2:3192091/1‑128 (MQ=255)
                                                                                     aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTAAAATAAGTATTCAGTAGTAAATTTAAAAAACaaat                                            >  1:868626/1‑127 (MQ=255)
                                                                                      ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGA‑‑A‑AAAAAAAAAAAAAAT‑AATAAAATTTAAAAAATATAAAAAATTTTTTTTAAAAAAATTATTATGTATTAAATTTaaaaaaaaaag                                            >  2:3474223/1‑123 (MQ=255)
                                                                                       tAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTGAA‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTTCAAAAAAAAAAAAAATTTTTTTCAAAAAATAATTAATTATAAAATTTTAAAAACCaaa                                            >  2:2655003/1‑127 (MQ=255)
                                                                                        aaacataaTACATTGTTTTTGGTTTTTTTATTTACTT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                         <  2:2246138/122‑1 (MQ=255)
                                                                                         aaaaaaataaatTTTGTTTGGTTTTTTTATTTAATATTTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                         <  2:2187151/124‑1 (MQ=255)
                                                                                         aaCAAAAAACATTGTTTTTGTTTTTTTTATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGtt                                        <  1:197661/128‑1 (MQ=255)
                                                                                          aacAAATAAATTTTTTTTGGTTTTTTTATTTAAAA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTta                                       <  1:653657/126‑1 (MQ=255)
                                                                                            aaattACATTGTGTTTGGTTTTTTTTTTTAATA‑TTC‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:2984228/124‑1 (MQ=255)
                                                                                             aattatattggttttGTTTTTTTTATTTAAT‑‑TTT‑‑‑C‑TAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaaa                                   <  1:1209143/116‑1 (MQ=255)
                                                                                             aaaTACATTTTTTTTTTTTTTTTTATTTAATA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaac                                   <  2:1838425/128‑2 (MQ=255)
                                                                                             aaaTACATTTTGTTTGGTTTTTTTATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaa                                    <  1:3322479/128‑1 (MQ=255)
                                                                                              aaTACATTGTGTTTGTTTTTTTTATTTACTA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATAAAATTTTAATAATAAAAAAAATTTTTTTTAAAATAATTATAAATAAAAAAATTTAAAAAACaaaaaataaaaaa                                   >  2:2800239/1‑118 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATAATATAAAAAATT‑TTTTTTAAAAAAATAATAAATAATTAATTTAAAAAAACAAAAATtaataat                                  >  1:100375/1‑123 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTATTTACTA‑TAG‑‑‑A‑AAAAAAAAAAAAAA‑‑AATAAAATTTGCATACTATAAAAAATATTTTTTCAAATAAATATAAAGTATTAAAAATAAAAAACAAATATTAATAAAt                                  >  2:1787006/1‑128 (MQ=255)
                                                                                               atattttttgtTTGGTTTTTTTTTTAAATT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                  <  1:1570060/120‑1 (MQ=255)
                                                                                                taaaTTGTGTTTTGTTTTTTTATTTAATA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCt                                <  2:3831800/125‑1 (MQ=255)
                                                                                                  cATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATAATATTTTAATTATAAAAAAAATTTTTTTTAAAAAAATTTATAAAGAATTAATTTAAAAAAACAAAATTTTTAAATAtt                               >  1:262589/1‑128 (MQ=255)
                                                                                                   ttttttttttGTTTTTTTATATTATT‑TTT‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                              <  1:2805409/122‑1 (MQ=255)
                                                                                                   aTTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGGTAATTTAAAAAACCAAGAGTTATAAATCTTgg                             >  1:2510567/1‑128 (MQ=255)
                                                                                                   aTTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAAATTATTAATTATTAAATTTAAAAAACAAATATTTATAAATAttta                             >  2:651134/1‑126 (MQ=255)
                                                                                                         tttGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAA‑AATATAATTTGAAAAAATAAAAAAATTTTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAAAAAATAGTTATAAATGTTGGttatt                        >  1:3725846/1‑128 (MQ=255)
                                                                                                          ttGGTTTTTTTATTTAATA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                       <  1:2456520/128‑1 (MQ=255)
                                                                                                           tGGTTTTTTTATTTACTA‑TTG‑‑‑AGAAAAAAAAAAAAAAT‑AATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAACAAAGATTTTTAAATATTGGtttttt                       >  1:2277465/1‑128 (MQ=255)
                                                                                                            tgTTTTTTTATTTACTA‑TT‑‑‑‑T‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGtt                    <  2:3791248/127‑1 (MQ=255)
                                                                                                            ggTTTTTTTTTTTACAATTTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                      <  2:2741201/128‑1 (MQ=255)
                                                                                                            ggTTTTTTTATATATTA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                     <  1:2908419/128‑1 (MQ=255)
                                                                                                            cgTTTTTTTATTAAC‑A‑TTT‑‑‑C‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTCTTGGttttttaaa                    <  1:1637196/127‑4 (MQ=38)
                                                                                                              tttttttATTTAAAT‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTCTTGGttttttaaat                   <  2:3971385/128‑5 (MQ=38)
                                                                                                               ttttttATTTAATA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                  <  1:145470/128‑1 (MQ=255)
                                                                                                               tttttaATTTAAAA‑TTT‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                  <  2:3373717/128‑1 (MQ=255)
                                                                                                                  tttatttaTTATTTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTTAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                <  2:1716469/128‑1 (MQ=255)
                                                                                                                      tttaCTA‑TTGAA‑A‑AAAAAAAAAAAAAAT‑AAAATAATTTGCAAAATATAAAAAATTTTTTTTAAAAAAATTATTAAGTAGTAAATTTAAAAAACAAATTATTAAAAATGTTTGTATTTTTTTtaattta             >  2:2114634/1‑123 (MQ=255)
                                                                                                                          aaa‑TTA‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt       <  2:2896183/126‑1 (MQ=255)
                                                                                                                               tG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGTATTAAATTTAAAAAACCAAGAGTTATAAATATTGGTTTTTTTTTTATATTATTATTTGtat   >  1:356104/1‑126 (MQ=255)
                                                                                                                                |                                                                                                                                    
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTA‑TTG‑‑‑A‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑