Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9450GT30.7% 2283.4 / inf 1597intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base G (858/114);  new base T (51/379);  total (932/665)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1616 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072
                                                                                                                                |                                                                                                                                    
      ttcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTTATGAATAATAAAAGATTAAACCAAATACATTCTGTTTGGTTATTTTATTTACTATTG‑‑‑aaaaaa                                                                                                                            >  1:328034/1‑128 (MQ=255)
        cttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTCTGTTTGGTATTATTATTTACTATTG‑‑‑aaaaaaaa                                                                                                                          >  2:3616066/1‑128 (MQ=255)
         tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑aaaaaaaaa                                                                                                                         >  2:3249988/1‑128 (MQ=255)
          ttttgtttttAAACAAAAACATTATTAAATGGTGAACCAAGTACAATTCTAAGTGTATTTTTTTAATAATAAAACATTAAACAAAATACATTGTGTTTGGTTTTTTTATTTAATTTTG‑‑‑aaaaaaaaaa                                                                                                                        <  2:911157/121‑1 (MQ=255)
              gattttCAAAAAAAATAGTAAGAAATGCTTAAACAAGTACAATGCTAAGTGAAGTTGTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTTAATATTG‑‑‑aaaaaaaaaaaaaa                                                                                                                    <  1:1375424/125‑1 (MQ=255)
              gAGTTTCAACAAAAATAGTAATAAATCCTTAACCAATTACAATGCTATGTGAATTTTATTAATAAAAAAACATAAAACCAAAAACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑aaaaaaaaaaaaaa                                                                                                                    <  1:2689599/128‑1 (MQ=255)
                gTTTCAACAAAAATAGTAAGAAATGGTGAACCAAGTACAATTCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTT‑‑‑AAAAAAAAAAAAAaat                                                                                                                  <  1:3041548/128‑1 (MQ=255)
                 tttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTTATTAATAATAAAAGATTAAACCAAATAAATTGTTAATATATTATATATTTACTATTG‑‑‑aaaaaaaaaaaaaaaaa                                                                                                                 >  2:1899928/1‑126 (MQ=255)
                  ttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑aaaaaaaaaaaaaaaaaa                                                                                                               >  2:1185985/1‑128 (MQ=255)
                   tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTGTTTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAaataat                                                                                                              >  2:2599537/1‑128 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑aaaaaaaaaaaaaaaataat                                                                                                              >  1:3799650/1‑123 (MQ=255)
                      acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTCTGTTTGGTTTTTTTATTTACTATTG‑‑‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:72044/1‑124 (MQ=255)
                       caaAAAGCTTAAGAAATGCTTTACAAATTAAAATGCTAAGTTTATTTTTTTAATAATAAATGTTTAAACCAAATAAATTGTGTTTGGTTTTTTTTTTTAATTTTT‑‑‑AAAAAAAAAAAAAAataatataa                                                                                                          <  2:799711/128‑1 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAaaaatataat                                                                                                         >  1:1267749/1‑128 (MQ=255)
                         aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAAtt                                                                                                        >  1:3897281/1‑128 (MQ=255)
                           aattgTAATAAATTGTTAAACAATTAAAATTATAATTGAATTTTATTAATAATAAAATTTTAAAAAAAATACATTTTTTTTGGTTTTTTTTTTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTg                                                                                                      <  2:3152004/124‑1 (MQ=255)
                               ttAAGAAATGATTAACCAAGTACAATGATAATTGATGTTTTTTAAAAATAAAATATTAATCCAAATACATTGTTTTGGGTTTTTTTATTTAATATTG‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATAc                                                                                                 <  1:1317640/127‑1 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAATATATTTTGCAt                                                                                                   >  1:772116/1‑128 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAAAAttttaata                                                                                                  >  1:1921911/1‑123 (MQ=255)
                                  ctatttGCTTAACCAAGTAGAATGGTAAGTGTAGTTTTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                              <  2:3726660/123‑1 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAAAATAATTTGAATaaaat                                                                                              >  1:3392980/1‑124 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAAAAtttaaataaaaaa                                                                                             >  2:1572090/1‑118 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAATTTATTTTGAATACTATaa                                                                                            >  1:435749/1‑128 (MQ=255)
                                    aaaTGCTGAACAAATTAAAATGTTAAGTTATGTTTTTTAATAATAAAATTTTAAACAAAATACATTGTGTTTGGTTTTTTTTTTTATTATTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                              <  2:1263312/128‑1 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAATATAATTTTAATAATAaaaa                                                                                           >  1:1124237/1‑128 (MQ=255)
                                         cTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAAAATTTGCATACTATaaaaaa                                                                                        >  1:3637474/1‑128 (MQ=255)
                                          ttaaCCAATTACAATGATAAGTGAATTTTATTAATAATAAAATATTAAACCAAATAAATTTTTTTTGGTTTTTTTATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAt                                                                                       <  2:1319146/126‑1 (MQ=255)
                                          tGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAAAATTTGAATACTAAAAAAAAt                                                                                       >  1:1502696/1‑128 (MQ=255)
                                               cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATTTTATTTGAATAATATAATAAATTGttt                                                                                  >  1:299228/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAAATTGAATACTATAAAAAAttttatt                                                                                 >  1:2147456/1‑123 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAAAACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAAAATAAATATAATAAAATAAAAAAttatata                                                                                 >  1:1699873/1‑123 (MQ=255)
                                                 aGTACATTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTTTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTGattt                                                                                 >  1:2569117/1‑128 (MQ=255)
                                                 aGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTTTGTTTGGTTTTTTTATTTACTATAT‑‑‑AAAAAAAAAAAAAAATAAATATAATTTAAATAAAATaaaaaaaagtaat                                                                                 >  2:1648388/1‑121 (MQ=255)
                                                  tttcattGCTAAGTGAAGTTGATGAATAATAAAATATTAAAACAAATACATTTTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  1:2343191/122‑1 (MQ=255)
                                                  ttACAATTCTATGTTAATTTGATTAAAAATAAAAGATAAAAACAAATACATTGTGTTTGGTTTTTTTATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  1:3956369/127‑1 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGAAAAAAAAAAAAAAAAATAATATAATTTGCATAATTAAAAAATTTGtttt                                                                                 >  1:3843733/1‑128 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAAAATTTGAATACTATAAAAAATTGTTTTTc                                                                               >  2:1403802/1‑128 (MQ=255)
                                                   tACAATTGTAAGTGACTTTTATGAATAATAAAATATTAAACCAAATACTTTGTGTTTGGTTTTTTTTTTTAATATTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTc                                                                               <  2:3045337/128‑1 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATAAAAAATTTTTTTTAAAATa                                                                          >  1:597311/1‑128 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATAAAAAATTTTTTTTAAAATaa                                                                         >  1:2395343/1‑128 (MQ=255)
                                                         gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAAAATAATTTACAAAAAAAAAAAAATTTTTTTAAAAATaaa                                                                        >  2:1072422/1‑127 (MQ=255)
                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAAAAGTATAAAAAATTTTTTTTAAAATAAGt                                                                       >  2:1515857/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAAAAAAAATTTAATAATAAAAAAAATTGTATTTAAAAAAATTa                                                                      >  2:3521845/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATTATATAAAAAATTTTTTTTAAAATAATTAt                                                                     >  1:3460864/1‑128 (MQ=255)
                                                              gttaattttattaataaaAAAATATTAAACAAAAAAAATTTTTTTTGTTTTTTTTATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  1:1045316/116‑1 (MQ=255)
                                                              gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAAAAAAATTTAAAAAAAATAAAAAAATATTTTTAAAAAAATTAta                                                                    >  2:2352548/1‑127 (MQ=255)
                                                                ttatgttatgaAAAATAAAATAATAAATCAAATAAATTTTGTTTGTTTTTTTATTTTAATTTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAATTTGTTTTTCAAATAAGTATTCAg                                                                 <  1:2765493/121‑1 (MQ=255)
                                                                gAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAattattaatta                                                               >  2:2419484/1‑123 (MQ=255)
                                                                 aaGTTTATTAAAAATAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTTAATATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  1:1879716/128‑1 (MQ=255)
                                                                 aaGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTCAAATAattattaat                                                                 >  2:559318/1‑125 (MQ=255)
                                                                  tttttattaattatAAAATATAAAAAAAAAAAAATTGTGTTTGTTTTTTTTATTTAATTTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  1:1784410/120‑1 (MQ=255)
                                                                   tttGAAGAATAATAAATTATTAAACAAATAAAATTGTGTTTGGTTTTTTTTTTTAATATTG‑‑‑AAAAAAAAAAAATAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                              <  2:1143161/127‑1 (MQ=255)
                                                                     ttattaataatAAAATATTAATCAAAATAAATTGTTTTTGTTTTTTTTATTTAATTTT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  1:2050817/123‑1 (MQ=255)
                                                                      tattaaaaataaAATTTTAAATAAAATAAATTTTGTTTGGTTTTTTTATTAAAATTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  2:3897281/121‑1 (MQ=255)
                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAATAAAATTTCAATAATATAAAAAAATTTTTTAAAAATAATTaaaaataaataaa                                                          >  1:523626/1‑116 (MQ=255)
                                                                        ttaataatAAAATTTTAAACAAAATACATTGTTTTTGGTTTTTTTATTTAATATTG‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAtt                                                        <  2:745023/126‑1 (MQ=255)
                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAATAAAATTTAAAAACTATAAAAAATTATTTTTAAAATAATTATTAATGATTAAAt                                                         >  2:197661/1‑128 (MQ=255)
                                                                         gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAt                                                         >  1:996558/1‑128 (MQ=255)
                                                                         gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAAAATAATTTGCATACTATAAAAAATATTTTTTAAAATAATTATTAAGTAGTAAAtt                                                        >  1:2207107/1‑128 (MQ=255)
                                                                           ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGAAAAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATGAGTAAAtt                                                        >  1:3216174/1‑128 (MQ=255)
                                                                           ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAAAATAATTTGCATAATATAAAAAATTATTTTTCAAAAAATTATTCaataactaaatag                                                      >  2:3662647/1‑116 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGAAAAAAAAAAAAAAAAAATAATAAAAATTTAATAATAAAAAAAATTTTTATTAAAATAAAAATTAAGAATTAAAttt                                                       >  1:919491/1‑128 (MQ=255)
                                                                               taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAAAAAAATAATTTGCAAAAAAAAAAAAATGTTTTTTCAAAAAATTATAAATTAATAAATTTaaaa                                                   >  2:248933/1‑128 (MQ=255)
                                                                                   ataTTAAAACAAATAAATTTTGTTTGGTTTTTTTTTTTAAAATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                             <  1:3157361/126‑1 (MQ=255)
                                                                                    gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAATATAATTTTCATACTATAAAAATTTTTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAAACaa                                             >  2:202720/1‑128 (MQ=255)
                                                                                    gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTAAATAATATAAAAAATTTATATAAAAATAAATTTTAATGAATAAATTTAAAAAACaaa                                             >  2:3192091/1‑128 (MQ=255)
                                                                                     aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTAAAATAAGTATTCAGTAGTAAATTTAAAAAACaaat                                            >  1:868626/1‑127 (MQ=255)
                                                                                      ttAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGA‑‑AAAAAAAAAAAAAAATAATAAAATTTAAAAAATATAAAAAATTTTTTTTAAAAAAATTATTATGTATTAAATTTaaaaaaaaaag                                            >  2:3474223/1‑123 (MQ=255)
                                                                                       tAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTGAAAAAAAAAAAAAAAAATAAAATAATTTTCAAAAAAAAAAAAAATTTTTTTCAAAAAATAATTAATTATAAAATTTTAAAAACCaaa                                            >  2:2655003/1‑127 (MQ=255)
                                                                                        aaacataaTACATTGTTTTTGGTTTTTTTATTTACTTTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                         <  2:2246138/122‑1 (MQ=255)
                                                                                         aaaaaaataaatTTTGTTTGGTTTTTTTATTTAATATTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                         <  2:2187151/124‑1 (MQ=255)
                                                                                         aaCAAAAAACATTGTTTTTGTTTTTTTTATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGtt                                        <  1:197661/128‑1 (MQ=255)
                                                                                          aacAAATAAATTTTTTTTGGTTTTTTTATTTAAAATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTta                                       <  1:653657/126‑1 (MQ=255)
                                                                                            aaattACATTGTGTTTGGTTTTTTTTTTTAATATTC‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:2984228/124‑1 (MQ=255)
                                                                                             aattatattggttttGTTTTTTTTATTTAATTTT‑‑‑CTAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaaa                                   <  1:1209143/116‑1 (MQ=255)
                                                                                             aaaTACATTTTTTTTTTTTTTTTTATTTAATATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATaac                                   <  2:1838425/128‑2 (MQ=255)
                                                                                             aaaTACATTTTGTTTGGTTTTTTTATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaa                                    <  1:3322479/128‑1 (MQ=255)
                                                                                              aaTACATTGTGTTTGTTTTTTTTATTTACTATTT‑‑‑AAAAAAAAAAAAAAATAATAAAATTTTAATAATAAAAAAAATTTTTTTTAAAATAATTATAAATAAAAAAATTTAAAAAACaaaaaataaaaaa                                   >  2:2800239/1‑118 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTTTTTTTAAAAAAATAATAAATAATTAATTTAAAAAAACAAAAATtaataat                                  >  1:100375/1‑123 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTATTTACTATAG‑‑‑AAAAAAAAAAAAAAAAATAAAATTTGCATACTATAAAAAATATTTTTTCAAATAAATATAAAGTATTAAAAATAAAAAACAAATATTAATAAAt                                  >  2:1787006/1‑128 (MQ=255)
                                                                                               atattttttgtTTGGTTTTTTTTTTAAATTTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                  <  1:1570060/120‑1 (MQ=255)
                                                                                                taaaTTGTGTTTTGTTTTTTTATTTAATATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCt                                <  2:3831800/125‑1 (MQ=255)
                                                                                                  cATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATAATATTTTAATTATAAAAAAAATTTTTTTTAAAAAAATTTATAAAGAATTAATTTAAAAAAACAAAATTTTTAAATAtt                               >  1:262589/1‑128 (MQ=255)
                                                                                                   ttttttttttGTTTTTTTATATTATTTTT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                              <  1:2805409/122‑1 (MQ=255)
                                                                                                   aTTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGGTAATTTAAAAAACCAAGAGTTATAAATCTTgg                             >  1:2510567/1‑128 (MQ=255)
                                                                                                   aTTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAAATTATTAATTATTAAATTTAAAAAACAAATATTTATAAATAttta                             >  2:651134/1‑126 (MQ=255)
                                                                                                         tttGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAAAAATATAATTTGAAAAAATAAAAAAATTTTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAAAAAATAGTTATAAATGTTGGttatt                        >  1:3725846/1‑128 (MQ=255)
                                                                                                          ttGGTTTTTTTATTTAATATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                       <  1:2456520/128‑1 (MQ=255)
                                                                                                           tGGTTTTTTTATTTACTATTG‑‑‑AGAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAACAAAGATTTTTAAATATTGGtttttt                       >  1:2277465/1‑128 (MQ=255)
                                                                                                            tgTTTTTTTATTTACTATT‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGtt                    <  2:3791248/127‑1 (MQ=255)
                                                                                                            ggTTTTTTTTTTTACAATTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                      <  2:2741201/128‑1 (MQ=255)
                                                                                                            ggTTTTTTTATATATTATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                     <  1:2908419/128‑1 (MQ=255)
                                                                                                            cgTTTTTTTATTAACATTT‑‑‑CAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTCTTGGttttttaaa                    <  1:1637196/127‑4 (MQ=38)
                                                                                                              tttttttATTTAAATTTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTCTTGGttttttaaat                   <  2:3971385/128‑5 (MQ=38)
                                                                                                               ttttttATTTAATATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                  <  1:145470/128‑1 (MQ=255)
                                                                                                               tttttaATTTAAAATTT‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                  <  2:3373717/128‑1 (MQ=255)
                                                                                                                  tttatttaTTATTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTTAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                <  2:1716469/128‑1 (MQ=255)
                                                                                                                      tttaCTATTGAAAAAAAAAAAAAAAAATAAAATAATTTGCAAAATATAAAAAATTTTTTTTAAAAAAATTATTAAGTAGTAAATTTAAAAAACAAATTATTAAAAATGTTTGTATTTTTTTtaattta             >  2:2114634/1‑123 (MQ=255)
                                                                                                                          aaaTTA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt       <  2:2896183/126‑1 (MQ=255)
                                                                                                                               tG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGTATTAAATTTAAAAAACCAAGAGTTATAAATATTGGTTTTTTTTTTATATTATTATTTGtat   >  1:356104/1‑126 (MQ=255)
                                                                                                                                |                                                                                                                                    
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTG‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: