Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3110CA31.9% 2504.7 / 197.7 1317intergenic (+275/‑267)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (300/574);  new base A (341/69);  total (671/646)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1346 total aligned reads displayed.

TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438
                                                                                                                                      |                                                                                                                                
ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                                                  <  1:3838370/128‑1 (MQ=255)
    cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTTTATAATTATATaaa                                                                                                                              >  1:1068720/1‑128 (MQ=255)
        ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATTATATTGAAATTTAAATTTTATGTATTTTTTTTTATAATTAAATaaaaa                                                                                                                            >  2:125912/1‑128 (MQ=255)
           tttatTTTTTTTATATGTAAATTTTTTAAAAATTAATTTTTATTTTTATAAAATTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                                                                                        <  2:1882546/126‑1 (MQ=255)
           gtttttttttGTATTTGTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                                                                                        <  2:1026096/124‑1 (MQ=255)
            atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTTTTTTTTTTTAAAATTATATAAAAAAAt                                                                                                                         >  2:3937494/1‑128 (MQ=255)
             tatTTTTTGTATATTCAAAATTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaaa                                                                                                                    <  2:309417/128‑1 (MQ=255)
              atTTTTTTTTTTTGTAAATTTTTAAAAAATTAATTTTAACTTGTTAAAAATAG‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaaa                                                                                                                    <  1:1663962/128‑1 (MQ=255)
              atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATATaaa                                                                                                                    >  1:1004419/1‑128 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAAATTAAATATAAATTTTATTTTTTTTTTTTTATAATTTTAAAAAAAAATAaaaat                                                                                                                   >  1:287507/1‑127 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAATTATAAATTTTAGTTTTTTTTTTTGATATTTTTATAAAAAAATaaaatg                                                                                                                   >  1:1752756/1‑126 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTGTATATGTATATAAAAAAATAGAAAgt                                                                                                                  >  1:411629/1‑127 (MQ=255)
                 ttttttATATTAAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAAAAT‑‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAgg                                                                                                                  <  1:2970399/128‑1 (MQ=255)
                   ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATTATTAAAATAAAAATTTTATGTTTTTTTTTTTATATTTATATAAAAAAATATaaataa                                                                                                                 >  1:3545723/1‑125 (MQ=255)
                   atGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTATAAAATGAAAATATAAATTTTATTTAATTTTTTTTATAATTAAAAAAAAAAAAATaaaaaaa                                                                                                                >  1:1300367/2‑124 (MQ=255)
                    tttatttttaaaTTTTTAAAAAATTTATTTTAAATTTTAAAAAATAT‑‑TTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                                                               <  1:24423/119‑1 (MQ=255)
                      ttttttaaaaTTTTTAAAAAATTTTTTTTTAATTTTAAAAAATTT‑‑TTTTTTTTTTTTTTTTTTTTTATTTTAAATTTAATTTTTTGTTTTTTTTTTTTTTATTTATATAAAAAAATATAAAGTaaaaa                                                                                                             <  2:585635/121‑1 (MQ=255)
                       atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTATTATAATTTAAATATAAATTTTATTTTTTTTTTTTAATAATTAATTAAAAAAATAAAAAGTaaaaa                                                                                                             >  2:1447895/1‑128 (MQ=255)
                        atttaaaaTTTTTAAAAATTAATTTTTAATTTTAAAAATTTTG‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  2:2624495/123‑1 (MQ=255)
                         tttttaaTTTTTTAAAAATTTATTTTTAATTTTAAAAAATATA‑‑TTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  1:3730119/123‑1 (MQ=255)
                         ttgaaaaTTATTAAAAAAATAATTTTAAATTTTTAAAAATATG‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  1:3155019/124‑1 (MQ=255)
                             ataTTTTTAAAAAATTTATTTTTTATTTTAAAAATTTTT‑‑TTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTg                                                                                                       <  2:2806955/126‑1 (MQ=255)
                                     aaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTATATTGTAATAAAAAATTTTATGTTTTTTGTTTTATATTTATTTAAAAAAATAAAAAATATAAAATTTTTTTaaaa                                                                                                 >  1:519781/1‑128 (MQ=255)
                                        aaattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTTTTTTTTTTTATAATTATAAAAAAAAAAAAAATGTAAAAAATTTTTTTAAaataaata                                                                                           >  2:3767994/2‑128 (MQ=255)
                                         aatttattTTTAATTTTAAAAAATAT‑‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                          <  1:3903149/128‑1 (MQ=255)
                                         aattaattTTTAATTTTAAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                                                                                           <  2:3713798/128‑1 (MQ=255)
                                          attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTATTATTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATaa                                                                                          >  1:2370646/1‑127 (MQ=255)
                                          attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTGTTTTATAATTAAATAAAAAAATATAAAGTAAAAAATTTTTTTTAAAGTAATaat                                                                                         >  2:1340664/1‑126 (MQ=255)
                                           ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAAGTTTATTTTAAATTTTTTGTTTTTTTTTTTCTAATTATATAAAAATATATAAAGTATAAATTTTTTTAAAATGTataaata                                                                                        >  2:1987138/1‑122 (MQ=255)
                                           ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAATAATGAAAAATTAAATATTAGTTATTTTGTTTAATAAATTAAAAAAAAAATATAAATAAAAAAATATTTTTAAAATAATAcaga                                                                                       >  1:2578926/1‑125 (MQ=255)
                                            ttattttatattGTAAAAAATAG‑‑GTTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                                                                                       <  2:3538196/118‑1 (MQ=255)
                                              attTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAATGAAAAATAAAATTTTATTTTTTTTTTTTAAAAATTAAAAAAAAAAATAAAAATTAAAAAAATTTTTaaaataaaataaaaaa                                                                                     >  2:275237/1‑116 (MQ=255)
                                               ttttaaaattttaaaaaTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                                                                                    <  2:419461/116‑1 (MQ=255)
                                                ttttatttGTTAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                                                                                    <  2:1174543/122‑1 (MQ=255)
                                                  gAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTTTGTATTTTTTTGTATAATTATATAAAAAAATATAATGTAAAAAATTTTTTTAAAATTAATAATAAAatt                                                                                  >  1:1491331/1‑128 (MQ=255)
                                                  gAAATTTTAAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAattat                                                                                <  1:3094106/128‑1 (MQ=255)
                                                   aaCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATTTAAAAATAAATTTTATTTATTTTTTTTTAAAATTAAAAAAAAAAAAAAAAAGAAAAAATTTTTTAAAAATTAAAAATaaatatat                                                                                 >  2:678330/1‑123 (MQ=255)
                                                    aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATTTAAATTTTAGTTTTTTTTTTGTCTAAGTATATAAAAAATTATAAAGTAAAAAATATTTTTAAATTTAATAATAAAAtttttt                                                                              >  2:3025652/1‑128 (MQ=255)
                                                     cTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTATAATGGAAAAAAAAATTTTTGTTTTTTTTTTTTATATGTATATAAAAAAATAAAAATTAAAAAATAATTTAAAATTTAATaaaaaatatat                                                                                 >  1:818682/1‑118 (MQ=255)
                                                      tttttataaaTATC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTa                                                                             <  2:3845876/121‑1 (MQ=255)
                                                      ttGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGAATTTTTTTGTATAATTATATAAAAAATAATAAAGTAAAAAATATTTTTAAAATAAATAAAAAAtttattta                                                                             >  2:1611256/1‑128 (MQ=255)
                                                      ttGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTTTATATTTATATTAAAAAAAAAAAAGTAAAAAATTTTTTTAAATTTAATATTAAAATTATTTaa                                                                            >  1:1540474/1‑128 (MQ=255)
                                                         tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTATTGGAAATATAAATTTTATGTATTTTTTTGTATATTTATATAAAAAAATTAAAAATAAAAAATATTTTAAAAATAAAAATAAAATATATTTaaatt                                                                         >  1:901919/1‑125 (MQ=255)
                                                            tttaaaaatttatttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt                                                                         <  2:802147/116‑1 (MQ=255)
                                                            aaaaTAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGTAAATTAAAATTTTTGGTATTTTTTTGTAAAATTAAATAAAAAAAAAAAAATAAAAAAATATTTTTAAAATAAATAATAAAATTTTTTAATTtta                                                                       >  2:2223683/1‑128 (MQ=255)
                                                            aaaaTAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAAAATAAATTTTAGGTATTTTGTTGGGTAAGTATCTAAAAAAATATAAATGAAAAAATATTTTTTATATTAATAATAAAATTTTTTAATTtta                                                                       >  1:2510863/1‑128 (MQ=255)
                                                               aTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGTTTTTTGTTGTGTAATTTTATAAAAAAATAAAAAGGAAAAAATATTGTAAAAATTAATAATAAATTAATTTAATTttaatta                                                                   >  1:2261510/1‑128 (MQ=255)
                                                                 aaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt                                                                    <  1:3677939/123‑1 (MQ=255)
                                                                  attttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                                   <  2:3606691/124‑1 (MQ=255)
                                                                  aatatctttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                                   <  2:3426320/122‑1 (MQ=255)
                                                                       ttttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                              <  1:2113450/128‑1 (MQ=255)
                                                                        tttttttttttttttttATAATGTAAATATAATTTTTTGGTTTTTTGTTTTGTAAGTATCTAAAAAAATATAAAGGAAAAAATTTTTTTAAAAGTAATACTATAATTTTTTAATTTTAATATAAACtt                                                             >  1:3050625/1‑128 (MQ=255)
                                                                         ttttttttttttttttATAATGTAAAAATAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATAAAAAGTAAAAAATATTTTAAAAATTAATAAAAAAATTATTAAATTTTAAATAAAAATta                                                            >  2:3235590/1‑128 (MQ=255)
                                                                          tttttttttttttttATAATGGAAATATAAATTTTAGTTTTTTTTTTTTATAATTATATAAAAAAAAAGAAAGTAAAAAATATTTTTAAAATTAAAAATAAAATTATTTAATTTTAATTAAAAATtaa                                                           >  2:1397308/1‑128 (MQ=255)
                                                                          tttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaa                                                           <  2:2104148/128‑1 (MQ=255)
                                                                           ttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaa                                                          <  2:3304040/128‑1 (MQ=255)
                                                                           ttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaa                                                          <  2:1682552/128‑1 (MQ=255)
                                                                            tttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaat                                                         <  1:3623097/128‑1 (MQ=255)
                                                                             ttttttttttttATATTTGAAATATTAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                        <  2:514407/128‑1 (MQ=255)
                                                                              tttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                                       <  1:1586303/128‑1 (MQ=255)
                                                                              tttttttttttATAATGTAAATATAAATTTTAGGTATTTTTTTGTATATTTATATAAAAAAATATAAAGTAAAAAATATTTTTAAATTTAATACTAAAATTATTTTATGTTAATTAAAAATtaaataa                                                       >  1:2055330/1‑128 (MQ=255)
                                                                              tttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                                       <  1:3466327/128‑1 (MQ=255)
                                                                                tttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATaaaa                                                     <  1:1830540/128‑1 (MQ=255)
                                                                                  tttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACa                                                   <  2:3191416/128‑1 (MQ=255)
                                                                                     ttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaa                                                <  2:2387828/128‑1 (MQ=255)
                                                                                      tttATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaaa                                               <  1:1381595/128‑1 (MQ=255)
                                                                                      tttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaaa                                               <  2:918327/128‑1 (MQ=255)
                                                                                            ttaTGGTAATATAAATTTTATGTATTTTGTTGTCTAATTATATAAAAAATTATTAATGTAAAAATTTTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATta                                           <  2:848365/126‑1 (MQ=255)
                                                                                              attgatatatatatTTTAGTTATTTTGTTGTCTTAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAATAGTAATACTAAAATTATTTAATGTTAATTATAACTTAAATAAAACATAAAATtaat                                         <  1:2683087/122‑1 (MQ=255)
                                                                                              attgatatatAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                         <  2:2471789/122‑1 (MQ=255)
                                                                                              aTGGAAATATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                         <  1:612646/128‑1 (MQ=255)
                                                                                                 gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  1:3270595/128‑1 (MQ=255)
                                                                                                   aaTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaaa                                    <  1:481541/128‑1 (MQ=255)
                                                                                                    atatAAATTTTAGGTATTTTGTTGTCTATGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGATAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                                   >  1:2192920/1‑128 (MQ=255)
                                                                                                     tataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATa                                  >  1:3200765/1‑128 (MQ=255)
                                                                                                       ataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAg                                 >  2:2686176/1‑128 (MQ=255)
                                                                                                        taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                                <  2:1125788/128‑1 (MQ=255)
                                                                                                        taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                                <  2:3377746/128‑1 (MQ=255)
                                                                                                          aaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                              >  1:1917834/1‑128 (MQ=255)
                                                                                                           aTTTTATGTATTTTGTTGTATAAGTATCTAAAAATATATAAAGGAAAAAATATTTTTAAAAGTAATAATAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaactattttta                             <  2:253242/128‑10 (MQ=255)
                                                                                                           aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATTTTAATTAAAACTAAAATAAAACATAATATTAATAAAAATAGTtta                             >  2:2160763/1‑128 (MQ=255)
                                                                                                           aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                             <  1:1987138/128‑1 (MQ=255)
                                                                                                             tttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                           <  2:1501318/128‑1 (MQ=255)
                                                                                                             tttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTttatt                           >  1:2784524/1‑128 (MQ=255)
                                                                                                              ttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatta                          >  1:1439876/1‑128 (MQ=255)
                                                                                                               tAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                         >  1:3791790/1‑128 (MQ=255)
                                                                                                                 ggTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  1:754169/1‑128 (MQ=255)
                                                                                                                     ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAATCTAAt                   >  1:959276/1‑128 (MQ=255)
                                                                                                                     ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   >  2:74538/1‑128 (MQ=255)
                                                                                                                      tttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAATTAAAACATAAAATTAATAAAAATAGTTTATTAAACTAttt                  >  2:1770331/1‑128 (MQ=255)
                                                                                                                         gttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               >  1:124907/1‑128 (MQ=255)
                                                                                                                         gttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               >  1:1198824/1‑128 (MQ=255)
                                                                                                                          ttgtATAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt              <  2:2946984/128‑1 (MQ=255)
                                                                                                                             tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           >  2:2301587/1‑128 (MQ=255)
                                                                                                                             tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           <  1:3353802/128‑1 (MQ=255)
                                                                                                                               tAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAt         >  1:1130415/1‑128 (MQ=255)
                                                                                                                                 aGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTGTATTAAACTAATTTCGTTTGAttt       >  1:2286442/1‑128 (MQ=255)
                                                                                                                                  gTATCTAAAAATATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTTATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      <  2:3655654/128‑1 (MQ=255)
                                                                                                                                     tCTAAAAAAATAGAAAGGAAAAAATATTTTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAATCATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaa   <  1:667330/128‑1 (MQ=255)
                                                                                                                                      cTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaaa  >  2:1080772/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                
TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: