Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3110CA31.9% 2504.7 / 197.7 1317intergenic (+275/‑267)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (300/574);  new base A (341/69);  total (671/646)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1346 total aligned reads displayed.

TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438
                                                                                                                                      |                                                                                                                                
ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                                                  <  1:3838370/128‑1 (MQ=255)
    cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTT‑TTATA‑ATTTAAAT‑ATAAATTTTAGTTATTTTTTTTTATAATTATATaaa                                                                                                                              >  1:1068720/1‑128 (MQ=255)
        ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATTAT‑‑ATTGAAAT‑TTAAATTTTATGTATTTTTTTTTATAATTAAATaaaaa                                                                                                                            >  2:125912/1‑128 (MQ=255)
           tttatTTTTTTTATATGTAAATTTTTTAAAAATTAATTTTTATTTTTATAAAAT‑TT‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                                                                                        <  2:1882546/126‑1 (MQ=255)
           gtttttttttGTATTTGTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATATC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                                                                                        <  2:1026096/124‑1 (MQ=255)
            atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑ATAAATTTTATTTTTTTTTTTTTAAAATTATATAAAAAAAt                                                                                                                         >  2:3937494/1‑128 (MQ=255)
             tatTTTTTGTATATTCAAAATTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑‑‑TATTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaaa                                                                                                                    <  2:309417/128‑1 (MQ=255)
              atTTTTTTTTTTTGTAAATTTTTAAAAAATTAATTTTAACTTGTTAAAAATAG‑‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaaa                                                                                                                    <  1:1663962/128‑1 (MQ=255)
              atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTT‑TTATA‑ATTTAAAT‑ATAAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATATaaa                                                                                                                    >  1:1004419/1‑128 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TAAAA‑AT‑TAAAT‑ATAAATTTTATTTTTTTTTTTTTATAATTTTAAAAAAAAATAaaaat                                                                                                                   >  1:287507/1‑127 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATTTAATT‑ATAAATTTTAGTTTTTTTTTTTGATATTTTTATAAAAAAATaaaatg                                                                                                                   >  1:1752756/1‑126 (MQ=255)
                tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑ATAAATTTTAGGTATTTTTTTGTATATGTATATAAAAAAATAGAAAgt                                                                                                                  >  1:411629/1‑127 (MQ=255)
                 ttttttATATTAAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAA‑AAT‑‑GTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAgg                                                                                                                  <  1:2970399/128‑1 (MQ=255)
                   ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTATT‑ATTAAAAT‑AAAAATTTTATGTTTTTTTTTTTATATTTATATAAAAAAATATaaataa                                                                                                                 >  1:3545723/1‑125 (MQ=255)
                   atGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑ATAAA‑ATGAAAAT‑ATAAATTTTATTTAATTTTTTTTATAATTAAAAAAAAAAAAATaaaaaaa                                                                                                                >  1:1300367/2‑124 (MQ=255)
                    tttatttttaaaTTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑T‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                                                               <  1:24423/119‑1 (MQ=255)
                      ttttttaaaaTTTTTAAAAAATTTTTTTTTAATTTTAAAAAAT‑TT‑‑TTTTTTTTTTTTTTTTT‑TTTTA‑TTTTAAAT‑TTAATTTTTTGTTTTTTTTTTTTTTATTTATATAAAAAAATATAAAGTaaaaa                                                                                                             <  2:585635/121‑1 (MQ=255)
                       atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTA‑TTATA‑ATTTAAAT‑ATAAATTTTATTTTTTTTTTTTAATAATTAATTAAAAAAATAAAAAGTaaaaa                                                                                                             >  2:1447895/1‑128 (MQ=255)
                        atttaaaaTTTTTAAA‑AATTAATTTTTAATTTTAAAAATTTTG‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  2:2624495/123‑1 (MQ=255)
                         tttttaaTTTTTTAAAAATTTATTTTTAATTTTAAAAAATATA‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATTGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  1:3730119/123‑1 (MQ=255)
                         ttgaaaaTTATTAAAAAAATAATTTTAAATTTTTAAAAATATG‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                           <  1:3155019/124‑1 (MQ=255)
                             ataTTTTTAAAAAATTTATTTTTTATTTTAAAAATTTTT‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATTGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTg                                                                                                       <  2:2806955/126‑1 (MQ=255)
                                     aaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTTTATATTGTAATAAAAAATTTTATGTTTTTTGTTTTATATTTATTTAAAAAAATAAAAAATATAAAATTTTTTTaaaa                                                                                                 >  1:519781/1‑128 (MQ=255)
                                        aaattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGTTTTTTTTTTTTATAATTATAAAAAAAAAAAAAATGTAAAAAATTTTTTTAAaataaata                                                                                           >  2:3767994/2‑128 (MQ=255)
                                         aatttattTTTAATTTTAAAAAATA‑T‑‑ATTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                          <  1:3903149/128‑1 (MQ=255)
                                         aattaattTTTAATTTTAAAAAATTTT‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                                                                                           <  2:3713798/128‑1 (MQ=255)
                                          attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTATTATTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATaa                                                                                          >  1:2370646/1‑127 (MQ=255)
                                          attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑ATAAATTTTAGTTTTTTTGTTTTATAATTAAATAAAAAAATATAAAGTAAAAAATTTTTTTTAAAGTAATaat                                                                                         >  2:1340664/1‑126 (MQ=255)
                                           ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTAAA‑AGTTTATT‑TTAAATTTTTTGTTTTTTTTTTTCTAATTATATAAAAATATATAAAGTATAAATTTTTTTAAAATGTataaata                                                                                        >  2:1987138/1‑122 (MQ=255)
                                           ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TAATA‑ATGAAAAA‑TTAAATATTAGTTATTTTGTTTAATAAATTAAAAAAAAAATATAAATAAAAAAATATTTTTAAAA‑TAATAcaga                                                                                       >  1:2578926/1‑125 (MQ=255)
                                            ttattttatattGTAAAAAATAG‑‑‑GTTTTTTTTTTTTTTTT‑ATATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                                                                                       <  2:3538196/118‑1 (MQ=255)
                                              attTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTAAA‑ATGAAAAA‑TAAAATTTTATTTTTTTTTTTTAAAAATTAAAAAAAAAAATAAAAATTAAAAAA‑ATTTTTaaaataaaataaaaaa                                                                                     >  2:275237/1‑116 (MQ=255)
                                               ttttaaaattttaaaaaTAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                                                                                    <  2:419461/116‑1 (MQ=255)
                                                ttttatttGTTAAAAATTTT‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                                                                                    <  2:1174543/122‑1 (MQ=255)
                                                  gAACTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑AAAAATTTTTTGTATTTTTTTGTATAATTATATAAAAAAATATAATGTAAAAAATTTTTTTAAAATTAATAATAAAat‑t                                                                                  >  1:1491331/1‑128 (MQ=255)
                                                  gAAATTTTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat‑tat                                                                                <  1:3094106/128‑1 (MQ=255)
                                                   aaCTTGTAAAAAATAGCT‑TTTTTTTTTTTTTTTTT‑TTATA‑ATTTAAAA‑ATAAATTTTATTTATTTTTTTTTAAAATTA‑AAAAAAAAAAAAAAAAGAAAAAATTTTTTAAAAATTAAAAATaaatatat                                                                                 >  2:678330/1‑123 (MQ=255)
                                                    aCTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATTGAAAT‑TTAAATTTTAGTTTTTTTTTTGTCTAAGTATATAAAAAATTATAAAGTAAAAAATATTTTTAAATTTAATAATAAAAt‑ttttt                                                                              >  2:3025652/1‑128 (MQ=255)
                                                     cTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAA‑AAAAATTTTTGTTTTTTTTTTTTATATGTATATAAAAAAATAAAAATTAAAAAATAATTTAAAATTTAATaaaaaatatat                                                                                 >  1:818682/1‑118 (MQ=255)
                                                      tttttataaaTATC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTa                                                                             <  2:3845876/121‑1 (MQ=255)
                                                      ttGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGAATTTTTTTGTATAATTATATAAAAAATAATAAAGTAAAAAATATTTTTAAAATAAATAAAAAAtt‑tattta                                                                             >  2:1611256/1‑128 (MQ=255)
                                                      ttGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑ATAAATTTTAGGTATTTTTTTTTATATTTATATTAAAAAAAAAAAAGTAAAAAATTTTTTTAAATTTAATATTAAAAT‑TATTTaa                                                                            >  1:1540474/1‑128 (MQ=255)
                                                         tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TT‑TA‑TTGGAAAT‑ATAAATTTTATGTATTTTTTTGTATATTTATATAAAAAAATTAAAAATAAAAAATATT‑TTAAAAATAAAAATAAAATATATTTaaatt                                                                         >  1:901919/1‑125 (MQ=255)
                                                            tttaaaaatttattttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGt                                                                         <  2:802147/116‑1 (MQ=255)
                                                            aaaaTAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGTAAAT‑TAAAATTTTTGGTATTTTTTTGTAAAATTAAATAAAAAAAAAAAAATAAAAAAATATTTTTAAAATAAATAATAAAAT‑TTTTTAATTtta                                                                       >  2:2223683/1‑128 (MQ=255)
                                                            aaaaTAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAA‑ATAAATTTTAGGTATTTTGTTGGGTAAGTATCTAAAAAAATATAAATGAAAAAATATTTTTTATATTAATAATAAAAT‑TTTTTAATTtta                                                                       >  1:2510863/1‑128 (MQ=255)
                                                               aTAGC‑‑‑TTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑AAAAATTTTAGGTTTTTTGTTGTGTAATTTTATAAAAAAATAAAAAGGAAAAAATATTGTAAAAATTAATAATAAATT‑AATTTAATTttaatta                                                                   >  1:2261510/1‑128 (MQ=255)
                                                                 aaaaattttttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGttaatt                                                                    <  1:3677939/123‑1 (MQ=255)
                                                                  atttttttttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGttaatta                                                                   <  2:3606691/124‑1 (MQ=255)
                                                                  aatatcttttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGttaatta                                                                   <  2:3426320/122‑1 (MQ=255)
                                                                       tttttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACt                                                              <  1:2113450/128‑1 (MQ=255)
                                                                        ttttttttttttttt‑ttATA‑ATGTAAAT‑ATAATTTTTTGGTTTTTTGTTTTGTAAGTATCTAAAAAAATATAAAGGAAAAAATTTTTTTAAAAGTAATACTATAAT‑TTTTTAATTTTAATATAAACtt                                                             >  1:3050625/1‑128 (MQ=255)
                                                                         tttttttttttttt‑ttATA‑ATGTAAAA‑ATAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATAAAAAGTAAAAAATATTTTAAAAATTAATAAAAAAAT‑TATTAAATTTTAAATAAAAATta                                                            >  2:3235590/1‑128 (MQ=255)
                                                                          ttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGTTTTTTTTTTTTATAATTATATAAAAAAAAAGAAAGTAAAAAATATTTTTAAAATTAAAAATAAAAT‑TATTTAATTTTAATTAAAAATtaa                                                           >  2:1397308/1‑128 (MQ=255)
                                                                          ttttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaa                                                           <  2:2104148/128‑1 (MQ=255)
                                                                           tttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaa                                                          <  2:3304040/128‑1 (MQ=255)
                                                                           tttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaa                                                          <  2:1682552/128‑1 (MQ=255)
                                                                            ttttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaat                                                         <  1:3623097/128‑1 (MQ=255)
                                                                             tttttttttt‑ttATA‑TTTGAAAT‑ATTAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaata                                                        <  2:514407/128‑1 (MQ=255)
                                                                              ttttttttt‑ttATA‑ATTGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaataa                                                       <  1:1586303/128‑1 (MQ=255)
                                                                              ttttttttt‑ttATA‑ATGTAAAT‑ATAAATTTTAGGTATTTTTTTGTATATTTATATAAAAAAATATAAAGTAAAAAATATTTTTAAATTTAATACTAAAAT‑TATTTTATGTTAATTAAAAATtaaataa                                                       >  1:2055330/1‑128 (MQ=255)
                                                                              ttttttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTtaaataa                                                       <  1:3466327/128‑1 (MQ=255)
                                                                                ttttttt‑ttATA‑ATTGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATaaaa                                                     <  1:1830540/128‑1 (MQ=255)
                                                                                  ttttt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACa                                                   <  2:3191416/128‑1 (MQ=255)
                                                                                     tt‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATaa                                                <  2:2387828/128‑1 (MQ=255)
                                                                                      t‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTTTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATaaa                                               <  1:1381595/128‑1 (MQ=255)
                                                                                      t‑ttATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATaaa                                               <  2:918327/128‑1 (MQ=255)
                                                                                            ttaTGGTAAT‑ATAAATTTTATGTATTTTGTTGTCTAATTATATAAAAAATTATTAATGTAAAAATTTTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATta                                           <  2:848365/126‑1 (MQ=255)
                                                                                              attgatat‑atatatTTTAGTTATTTTGTTGTCTTAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAATAGTAATACTAAAAT‑TATTTAATGTTAATTATAACTTAAATAAAACATAAAATtaat                                         <  1:2683087/122‑1 (MQ=255)
                                                                                              attgatat‑atAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                         <  2:2471789/122‑1 (MQ=255)
                                                                                              aTGGAAAT‑ATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                         <  1:612646/128‑1 (MQ=255)
                                                                                                 gAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  1:3270595/128‑1 (MQ=255)
                                                                                                   aaT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaaa                                    <  1:481541/128‑1 (MQ=255)
                                                                                                    at‑atAAATTTTAGGTATTTTGTTGTCTATGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGATAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                                   >  1:2192920/1‑128 (MQ=255)
                                                                                                     t‑ataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATa                                  >  1:3200765/1‑128 (MQ=255)
                                                                                                       ataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAg                                 >  2:2686176/1‑128 (MQ=255)
                                                                                                        taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                                <  2:1125788/128‑1 (MQ=255)
                                                                                                        taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                                <  2:3377746/128‑1 (MQ=255)
                                                                                                          aaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                              >  1:1917834/1‑128 (MQ=255)
                                                                                                           aTTTTATGTATTTTGTTGTATAAGTATCTAAAAATATATAAAGGAAAAAATATTTTTAAAAGTAATAATAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaactattttta                             <  2:253242/128‑10 (MQ=255)
                                                                                                           aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATTTTAATTAAAACTAAAATAAAACATAATATTAATAAAAATAGTtta                             >  2:2160763/1‑128 (MQ=255)
                                                                                                           aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGTAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                             <  1:1987138/128‑1 (MQ=255)
                                                                                                             tttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                           <  2:1501318/128‑1 (MQ=255)
                                                                                                             tttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTttatt                           >  1:2784524/1‑128 (MQ=255)
                                                                                                              ttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatta                          >  1:1439876/1‑128 (MQ=255)
                                                                                                               tAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                         >  1:3791790/1‑128 (MQ=255)
                                                                                                                 ggTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  1:754169/1‑128 (MQ=255)
                                                                                                                     ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAATCTAAt                   >  1:959276/1‑128 (MQ=255)
                                                                                                                     ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   >  2:74538/1‑128 (MQ=255)
                                                                                                                      tttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAATTAAAACATAAAATTAATAAAAATAGTTTATTAAACTAttt                  >  2:1770331/1‑128 (MQ=255)
                                                                                                                         gttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               >  1:124907/1‑128 (MQ=255)
                                                                                                                         gttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               >  1:1198824/1‑128 (MQ=255)
                                                                                                                          ttgtATAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt              <  2:2946984/128‑1 (MQ=255)
                                                                                                                             tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           >  2:2301587/1‑128 (MQ=255)
                                                                                                                             tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           <  1:3353802/128‑1 (MQ=255)
                                                                                                                               tAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAt         >  1:1130415/1‑128 (MQ=255)
                                                                                                                                 aGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTGTATTAAACTAATTTCGTTTGAttt       >  1:2286442/1‑128 (MQ=255)
                                                                                                                                  gTATCTAAAAATATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTTATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      <  2:3655654/128‑1 (MQ=255)
                                                                                                                                     tCTAAAAAAATAGAAAGGAAAAAATATTTTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAATCATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaa   <  1:667330/128‑1 (MQ=255)
                                                                                                                                      cTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaaa  >  2:1080772/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                
TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTT‑TTATA‑ATGGAAAT‑ATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑