Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA38.9% 368.3 / 136.1 340intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (113/91);  new base A (30/100);  total (146/194)
Fisher's exact test for biased strand distribution p-value = 5.11e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 396 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202350‑202601
                                                                                                                               |                                                                                                                            
tagtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATGTAGTTCATCGGTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                              <  1:1986107/127‑1 (MQ=255)
atttagtGTAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                              <  1:3684314/125‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAATATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                              <  1:2863169/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATACTTCTTATAATGTAGATCCTCGTGATCTATATTATAATTTAATTATCTACACAAATAAAAAAAAAAc                                                                                                                              >  1:3263848/1‑128 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                              <  1:1095148/128‑1 (MQ=255)
 tgtcgggatgTTATTGTAAATAATCTAGTTAAGGTTAATTAAAATACCTTAAACTTATTAATTCTTATTATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                             <  2:3307124/119‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                             <  1:1916552/128‑1 (MQ=255)
   tagtTAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                           <  2:2771352/128‑1 (MQ=255)
   tagtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                           <  1:581540/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATc                                                                                                                          <  2:1878598/128‑1 (MQ=255)
    attGAATTTTGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                          <  2:251232/126‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTTAGGTTAATTAAAATAAAATAAAATTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                          <  2:3825570/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                          <  1:3377126/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                          >  2:3399245/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                          <  2:2411291/128‑1 (MQ=255)
     ttttatttAGTGTAAATAATAGATTTAACGTTAATTAAAAAAACATAAACTTAATAATTCTTTTAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                         <  2:1504607/122‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                         <  1:3791074/128‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcca                                                                                                                        >  2:3642137/1‑127 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATAAAATAAAATTAATAATTATTATAATTTAGATAATCAATAACTATTTTTTTATTTAATTAAAATAAAAAATAaaaaaaaaaaaaaaaaa                                                                                                                       >  2:2902958/1‑123 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccc                                                                                                                       <  1:2505428/128‑1 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTAGTGATCTATTTTTTTATTTTTTTATATTCACAAATAaaaaaaaaaaaaaaaaa                                                                                                                       >  2:207795/1‑123 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccc                                                                                                                       <  1:1177637/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                      <  2:3955952/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                     <  1:1163033/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTTGTTTATCTTAACAaaaaaaaaaaaaaaaaacaaaat                                                                                                                     >  2:1274467/1‑121 (MQ=255)
          tttATTGTAAATAATATAGTTAAGGTTAATTAAAAAAACATAAAATTAATAAATATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                    <  1:3883694/127‑2 (MQ=255)
          gTTAGTGTAAATAATATAGTTAATGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTTTTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                    <  2:2985703/128‑2 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAaaaaaaaaaaaaaacaacta                                                                                                                    >  2:3818071/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCtta                                                                                                                    >  1:3283849/1‑127 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAaaaaaaaaaaaaaaaaattaa                                                                                                                   >  2:1198350/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATATATTATTAGTATATCTTCACAAATAAAAAAAAAACaaacaaaataa                                                                                                                   >  1:3479874/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCCTCTTAATCTATTATTTTATTTATATATCTTAAAAAATAaaaaaaaaaaaaatcaactaa                                                                                                                   >  2:37659/1‑119 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCCTCTTTATCTATTATTTTATTTTTTTATATTCACAAATAaaaaaaaaaaaaaaacataaaaa                                                                                                                 >  2:2183218/1‑117 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTAATAATATAGATCATCATAATCTATTATAAAATATAATTATCATAACAAATAAAAAAAAAAAAAtaacataaaaa                                                                                                                 >  2:2667052/1‑118 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCCCCttaaaaa                                                                                                                >  1:1628774/1‑123 (MQ=255)
                tttaataatATAGTTAAGGTTAATAAAAATACAATAAAATTAATAATTCATAAAATTTAGATCCTCGTGATATATTTTTTTATTTGTTTAACTTCACAAATAAAAAAAAAACAATCCCCttaaaaatt                                                                                                              <  1:2420134/125‑8 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑aaaaaaataaaaaa                                                                                                      >  2:1577772/1‑128 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCACATTAaaaaaaaaaa                                                                                                          >  2:1009301/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑Ttaaaaaataaaaaa                                                                                                      >  2:3700628/1‑128 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaa                                                                                                  >  2:3268553/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTATATCCTCGTGATCTAATTATTTATATAATAATCATCACAAAAAAAAAAAAAAACAAAACCaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:504916/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAT‑‑CAAATTAAAAATTaaaaaaaaaaaaaa                                                                                              >  1:3352249/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATAAAATAAACTTAATAATTATTATAATATAGATCATCTTTATATAATTATTTATTTTTTTATCTTAACAAATAAAAAAAAAACAAT‑‑AAAAATAAAAATTaaaaaaaaaaaaaa                                                                                              >  2:1076018/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                             >  2:3231204/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAACAATCAACTTaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:3617715/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTCATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAAAACC‑‑ATAAAAAAATaaaaaaaaaaaaaaa                                                                                             >  2:2546162/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                            >  2:3544626/1‑128 (MQ=255)
                                 ttttaataaaAATAAAAAAAAATTAAAAATTATTAAAATTTATATAATATTTATATATTTTTTTATTTGTTTATATTCAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           <  1:1879241/126‑1 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaa                                                                                           >  2:2976666/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           >  2:3861398/1‑128 (MQ=255)
                                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                          >  2:3143326/1‑128 (MQ=255)
                                  gTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                          <  1:3039608/128‑1 (MQ=255)
                                   ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCC‑‑AATAAAAAATaaaaaaaaaaaaaaaaaaa                                                                                         >  2:1387662/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATAATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACAC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:1117254/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:425851/1‑128 (MQ=255)
                                      attaaAATACCATAAACTTAATAATACTTATAATGTAGATCAACTAGATCTAATTTTATATTTATTAAACTTCACAAAAAAAAAAAAAAAAAACCC‑‑‑AAAAAAAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:1716103/1‑126 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCATTAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:3098075/1‑128 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:888188/1‑126 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAATTAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:3580429/1‑128 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAATACC‑CTAAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  2:2287913/1‑127 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATATTTATATTCACAAATAAAAAAAAAAAAA‑‑ACAAATTAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  1:310070/1‑123 (MQ=255)
                                                cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATTTTCACAAATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAaaaaaaaaaaacaaaaaaaaaaaaca                                                                              >  2:3361469/1‑128 (MQ=255)
                                                   aaaaTTAATAATTTTTATAATTTTTATACTAGTTATATTTTTTTTTATTTTTTTATATTCAAAAAAAAAAAAAAAAAAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                        <  1:3201110/128‑1 (MQ=255)
                                                       ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAaaacaaaaaatattt                                                                    >  1:3167922/1‑120 (MQ=255)
                                                        taaaaaTTTTTATAATTTAGTAACTCGTTATATTTTTTTTTTTTTTTTTATATTCAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                    <  2:3599478/128‑1 (MQ=255)
                                                         aataatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                           <  1:3430172/74‑1 (MQ=255)
                                                            aaattttAAAATGTACATCCACGTTTTATATTTTTTTATTTGTTTATATTAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                <  1:2906640/123‑1 (MQ=255)
                                                                           ttatcacGTGTTTTATTTTTTTTTTTTTTTATCATAAAAAAAAAAAAAAAAAAAATACCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                  <  2:3613599/122‑1 (MQ=255)
                                                                             ttatttttttaaaTTTTTTTTTTTTTTTATATTAAAATATAAAAAAAAAAAAATTCACTTT‑‑AAAATTTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  2:81037/116‑1 (MQ=255)
                                                                              tatttttatattttttttttttttttTAT‑TTTAAAAAAAAAAAAAAAAAAAAACCCATAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                               <  1:2287913/116‑1 (MQ=255)
                                                                              ctagttatttattttttttATTT‑TTTAATTTCAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACca                                              <  2:968684/116‑1 (MQ=255)
                                                                              ccTCGTGATATATTTTTTTATTTTTTTATAATAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:3500837/128‑1 (MQ=255)
                                                                              aaaatttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:103008/118‑1 (MQ=255)
                                                                               ctctttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  1:2186249/119‑1 (MQ=255)
                                                                                tttttttttttttttttATTTTTTAATATTAAAAAATAAAAAAAAAATAAATACC‑TTAAAAATTTAAATAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  1:1389085/118‑1 (MQ=255)
                                                                                tctgtttttATTTTTTTTTTTTTTTATATAAAAAAAAAAAAAAAAAAAAAACCCC‑TAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  2:3187591/120‑1 (MQ=255)
                                                                                aatttatatatttttttattttttTATAATAAAAAAAAAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                         <  1:3308624/120‑1 (MQ=255)
                                                                                  ttttttttttttttttttttttttTATAAAAAAAAAAAAAAAAAAAAAACCCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                            <  1:496538/120‑1 (MQ=19)
                                                                                   ttttatttttttttatttttttaTATAAAAAAAAAAAAAAAAAAAAAAACAC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                          <  1:870591/121‑1 (MQ=255)
                                                                                   ggATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAACCTATATTTATAAAAATTACCTATTAAACCAAatttt                                        >  2:3041419/2‑128 (MQ=255)
                                                                                    ttatttattttatATTT‑TTTATATATACAAATAAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                       <  2:1996424/121‑1 (MQ=255)
                                                                                       cTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAATATTTCTTAAAATTCACTATAATTCCACattttatat                                    >  2:2070198/1‑126 (MQ=255)
                                                                                         aattttttttttttttttttATAAAAATAAAAAAAAAAAAAAACCCATT‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  1:3538457/126‑1 (MQ=255)
                                                                                          ttttttttttttttttttttTAAAAAAAAAAAAAAAAAAATACCC‑TTTAAAATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  2:3479874/128‑1 (MQ=255)
                                                                                          tttttttatttttttaTATTAAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:912992/128‑1 (MQ=255)
                                                                                          tttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:272589/128‑1 (MQ=255)
                                                                                           ttttttttttttTAAAATTTAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:1214077/128‑1 (MQ=255)
                                                                                           tttttaATTTTTTTATATAAAAAAAAAAAAAAAAAAAAAT‑‑ACAATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:445315/128‑1 (MQ=255)
                                                                                              tttATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                               <  1:204223/128‑1 (MQ=255)
                                                                                                tATTTTTTTATCTAAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:1508775/128‑1 (MQ=255)
                                                                                                 tttttttTATCTTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:3008238/127‑1 (MQ=255)
                                                                                                  tttGTTTAAATTAAAAAAAAAAAAAAAAAAAATACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:2775978/128‑1 (MQ=255)
                                                                                                      tttATATACTCAAATATAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:3561502/128‑1 (MQ=255)
                                                                                                        ttatattaaaaaaaaaaaaaaaaaaATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGataat                     <  2:483045/119‑3 (MQ=255)
                                                                                                        tATCTTCACAAATAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAAAAAACAAAATTAAATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAATTTTTGACa                 >  2:3514996/1‑128 (MQ=255)
                                                                                                                 aaaaaaaaaaaaaaaaATCACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata          <  1:686201/128‑1 (MQ=255)
                                                                                                                   taaaaaaaaaaaCAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAAAACTATTAATTAAAATTCAATATTTTAAAAAATTTTTTTTTTAAAATAAGATATTAAAAAAttatataaa      >  1:3127480/3‑126 (MQ=255)
                                                                                                                    tAAAAAAAAAAAAATACCCTT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt     <  1:3812424/128‑1 (MQ=255)
                                                                                                                    aaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata        <  1:414404/127‑1 (MQ=255)
                                                                                                                          aaaaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAATAAATTTATAAAAATAAACTATTATAAAAATTTTTTTTTTTAAAAAATATTATTTAATTAATATAAATATAat  >  1:2604645/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                            
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202350‑202601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑