Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA32.3% 329.7 / 41.1 284intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (79/93);  new base A (23/59);  total (115/169)
Fisher's exact test for biased strand distribution p-value = 9.07e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 326 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202353‑202601
                                                                                                                                  |                                                                                                                            
 tgtGAATTTAGTTTAAATAATAGTTTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                              <  2:2294019/127‑1 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                              <  2:2411291/128‑1 (MQ=255)
  gtgtAGTTAGTTTAAATAATAGAGTTAAGTTTAATTAAAATACCATTAACATAATAATTCTTTTAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                             <  2:254722/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGTGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                             <  1:2829684/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                             <  1:3791074/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                             <  1:3926240/128‑1 (MQ=255)
   tgaatgtAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAGATTAACTTAATAATTCTTATAATGTAGATACTCGTTATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATccc                                                                                                                            <  2:1660894/122‑1 (MQ=255)
    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcccc                                                                                                                           <  1:212303/128‑1 (MQ=255)
      aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTAGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAAcccaaa                                                                                                                         >  2:2073840/1‑125 (MQ=255)
      aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑AAAAAA‑AAAAAAAAAAAAATcaaaat                                                                                                                         >  2:1393446/1‑123 (MQ=255)
      aGTTAGTGTAAATAATAGAGTAAATGTTAATTAAAATACAATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                         <  1:1770975/128‑1 (MQ=255)
       gTTAGTGTAAATAATTGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAACAATCCCCtt                                                                                                                         <  2:2826374/128‑1 (MQ=255)
       gTTAGTGTAAATAATATAGTTAATGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTTTTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  2:2985703/128‑2 (MQ=255)
       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  1:3819055/128‑2 (MQ=255)
       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTC‑ACAAAT‑AAAAAAAAAACAATccaataa                                                                                                                        >  2:441237/1‑123 (MQ=255)
        ttAGTTTAAAAAATATAGTTAATGTTAATTAAAATAACATAAACTTAATAATTCTTAAAATGTATATCCTCGTGTTCTATTTTTTTATTTGTTTATATTC‑ACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                       <  2:17600/128‑3 (MQ=255)
         tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCCtaaaa                                                                                                                      >  2:3147859/1‑124 (MQ=255)
          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCACCttaaaa                                                                                                                     >  2:3824749/1‑124 (MQ=255)
          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCAttaaaa                                                                                                                     >  2:3840125/1‑124 (MQ=255)
          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAACCCAttaaaa                                                                                                                     >  2:2981214/1‑124 (MQ=255)
          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAATCACCttaaaaa                                                                                                                    >  2:3612303/1‑123 (MQ=255)
                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAATCCC‑‑attaa‑‑‑aaattaaaa                                                                                                         >  1:3341020/1‑128 (MQ=255)
                  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCAC‑‑ttaa‑‑‑aaattaaaaa                                                                                                        >  2:3210644/1‑128 (MQ=255)
                   aataTATTTAATGTTAATTAAAATACCATAAACTTAAAAATTATTATAATTTATATACTCGTGATCTATTTTTTTTATTTTTTATATTC‑ACAAAT‑AAAAAAAAAAAAATCCCC‑‑Ttaa‑‑‑aaattaaaaaa                                                                                                       <  1:3551751/128‑1 (MQ=255)
                     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaa                                                                                                     >  2:3677425/1‑128 (MQ=255)
                     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAA‑‑‑AAATTaaaaaaaa                                                                                                     >  2:3520340/1‑128 (MQ=255)
                      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATAACATT‑‑‑A‑‑‑AAAATaaaaaaaa‑aa                                                                                                  >  2:1214077/1‑128 (MQ=255)
                        agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTAC‑ACAAAT‑AAAAAAAAAACAAACAAC‑‑TAAA‑‑‑AAAATaaaaaaaa‑aaa                                                                                                 >  1:967396/1‑128 (MQ=255)
                          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaa                                                                                               >  2:3366490/1‑128 (MQ=255)
                          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaa                                                                                               >  2:3702872/1‑128 (MQ=255)
                          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTATATCCTCGTGATCTAATTATTTATATAATAATCATC‑ACAAAA‑AAAAAAAAAAACAAAACCaaaaaa‑‑‑aaaaaaaaaaaaa‑aaa                                                                                                 >  2:504916/1‑128 (MQ=255)
                           tAAGGTTAATTAAAATAAAATAAACTTAATAATTATTATAATATAGATCATCTTTATATAATTATTTATTTTTTTATCTTA‑ACAAAT‑AAAAAAAAAACAAT‑‑AAAAATAA‑‑‑AAATTaaaaaaaa‑aaaaaa                                                                                              >  2:1076018/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTAATTTATCTAC‑AAAAAT‑AAAAAAAAAAAAATCAAAAT‑‑‑A‑‑‑AAAATaaaaaaaa‑aaaaaaaa                                                                                            >  2:1910970/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAAACAC‑‑‑AAA‑‑‑AAAATtaaaaaaa‑aaaaaaaa                                                                                            >  2:487486/1‑128 (MQ=255)
                             tggTTAATTAAATTAAATAAAACTTAATAATTTTTTTAAT‑TTTATCCTGGGGTTATATTTTTTTTTTTTTTTTAATTA‑AAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaa                                                                                            <  1:3034977/127‑1 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAAAACATTaaaa‑‑‑aaaaaaaaaaaaa‑aaaaaaa                                                                                             >  2:2729753/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTC‑ACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaa                                                                                           >  2:3861398/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAA‑‑‑AAAATtaaaaaaa‑aaaaaaaaaa                                                                                          >  2:2533912/1‑128 (MQ=255)
                                ttaattaaAAATAAAAAAAATTAATAATTCTTAAAATTTATATCATCGTGATATATTTTTTTATTTTTTTATATTA‑ACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaa                                                                                         <  1:1175868/128‑1 (MQ=255)
                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTAACTTC‑ACAAAA‑AAAAAAAAAAAAAACC‑‑‑AAAAA‑‑‑AAAATaaaaaaaa‑aaaaaaaaaaaaa                                                                                       >  2:1511183/1‑128 (MQ=255)
                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaa                                                                                        >  2:2232916/1‑128 (MQ=255)
                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAAAACAC‑‑ATAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaaa                                                                                       >  1:3532206/1‑128 (MQ=255)
                                 taattaaAATACCATAAACTTAATAATTATTATAATTTATATACTCTTGATCTATTTTTATAAATTTTAATCTTC‑AAAAAT‑AAAAAAAAAACAATCACCTT‑‑‑A‑‑‑AAAATaaaaaaaa‑aaaaaaaaaaaaa                                                                                       >  1:1552787/1‑128 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑AAAATaaaaaaaa‑aaaaaaaaaaaaa                                                                                       >  2:2048693/1‑128 (MQ=255)
                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTAAAA‑‑‑ATAaaaaaaaaaa‑aaaaaaaaaaaa                                                                                        >  1:2037752/1‑128 (MQ=255)
                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCCTGATCTATTTTTTTATTTGTTTATCTTA‑ACAAAT‑AAAAAAAAAACAATAAAC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaata                                                                                      >  2:1320288/1‑126 (MQ=255)
                                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaaaaa                                                                                     >  2:888188/1‑126 (MQ=255)
                                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCAATTAAAA‑‑‑ATaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                       >  1:3580429/1‑128 (MQ=255)
                                    ttaaAATACCATAAACTTAATAATTCATATAATGTATATACTCTTTATCTATTATTTTATTAGTTTAAAATA‑AAAAAT‑AAAAAAAAAACAAACAC‑‑‑ATAA‑‑‑AAAATaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                    >  2:3109161/1‑125 (MQ=255)
                                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCACC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                   >  2:3049022/1‑124 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTC‑ACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACAaaaa                                                                                 >  2:3257135/1‑128 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATCTATTTTTTTATTTGTTTTTATTC‑ACAAAT‑AAAAAAAAAACAATCCTCTTATAA‑‑‑ATTAAaaaaaatt‑aaaaaataaaatcaaa                                                                                    >  2:3639578/1‑123 (MQ=255)
                                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTATTTAATTATTTATATTC‑ACAAAT‑AAAAAAAAAACAA‑‑ACAAAATAA‑‑‑AAATTAaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                 >  1:429111/1‑128 (MQ=255)
                                          taaaaTAAAATTAAAAATTATTATAATTTATATAATTGTTATATATTTTTTTATTTGTTTATATTA‑AAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAaaac                                                                               <  1:262821/124‑1 (MQ=255)
                                           aaaaTAAAAATAATAATTATAATAATTTAGATAATATTTATATATTTTTTTATTTTTTTATATTCAAAAAAA‑AAAAAAAAAACAAAACCCTT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAATCTAAaaaca                                                                              <  1:626488/125‑1 (MQ=255)
                                            ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaa‑aaaaaaaaaaaataaaaaaaaaa                                                                             >  1:3102395/1‑117 (MQ=255)
                                                aaaaTTAATAATTTTTATAATTTTTATACTAGTTATATTTTTTTTTATTTTTTTATATTC‑AAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                        <  1:3201110/128‑1 (MQ=255)
                                                 aaattAATAATTATTAAAAATTATATCCTCTTTATATATTTTTTTATTTTTTTATCTTA‑ACAAAT‑AAAAAAAAACCAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:2326554/125‑1 (MQ=255)
                                                 aaCTTAATAATTATTAAAATTTATATAATTGTTTTCTATTTTTTTATTTTTTTATTTTA‑ACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:3280606/128‑1 (MQ=255)
                                                    ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAA‑TAAaaacaaaaaatattt                                                                    >  1:3167922/1‑120 (MQ=255)
                                                      aataaataTTATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTC‑AAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑‑TAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                               <  1:3370337/128‑1 (MQ=255)
                                                       ataatTATTATAATTTATATCCAGGTGATCTATTTTTTTATTTTTTTATCTTC‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                  <  1:3642137/128‑1 (MQ=255)
                                                                  aaTTTAGATACACGTGTTTTATTTTTTTATTTGTTTATAATA‑ACAAAT‑AAAAAAAAAA‑AAACCACTT‑‑‑A‑‑‑AAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                    <  1:3498849/128‑1 (MQ=255)
                                                                       ttaTCCTAGTTATATATTTTTTTATTTTTTTATATTA‑ACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑AAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                <  1:549676/126‑1 (MQ=255)
                                                                          ttatttttttaaaTTTTTTTTTTTTTTTATATTA‑AAATAT‑AAAAAAAAAAAAATTCACTTT‑‑A‑‑‑AAATTTAAAAAAA‑AAAAAAAAAAAAA‑TAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  2:81037/116‑1 (MQ=255)
                                                                          tactatttttttATTTTTTTAATTTTTTAAATTA‑AAAAAA‑AAAAAAAAAAAAAACCCCTAATAA‑‑‑ATTAAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                 <  1:2244229/117‑1 (MQ=255)
                                                                           ctagttatttattttttttATTT‑TTTAATTTC‑AAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑AATAAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACca                                              <  2:968684/116‑1 (MQ=255)
                                                                           aaaatttatatatttttttattttttTATATTA‑AAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:103008/118‑1 (MQ=255)
                                                                             tttttttttttttttttATTTTTTAATATTA‑AAAAAT‑AAAAAAAAAATAAATACC‑TTAAA‑‑‑AATTTAAATAATA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  1:1389085/118‑1 (MQ=255)
                                                                             tttatttatttttttttATTT‑ATTA‑CTTA‑AAAAAA‑AAAAAAAAAAAAATTAAATTT‑‑A‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTAATATACCACatt                                          <  1:2474057/118‑1 (MQ=255)
                                                                              tttttaaaaTTTTTTTATTT‑TTTAAATAT‑AAAAAA‑AAAAAAAAAAAAAAACCCTAAAAA‑‑‑AATAAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                            <  1:496533/120‑1 (MQ=255)
                                                                                ttttatttttttttatttttttaTATAA‑AAAAAA‑AAAAAAAAAAAAAAACAC‑TTAAA‑‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                          <  1:870591/121‑1 (MQ=255)
                                                                                 tatatatttttttattttttTATATAA‑AAAAAT‑AAAAAAAAAACAATACCC‑ATAAA‑‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                         <  1:2902958/124‑1 (MQ=255)
                                                                                 attatatttttttattt‑tttATAATT‑AAAAAA‑AAAAAAAAAAAAAAAACCATT‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                       <  1:1188682/124‑1 (MQ=255)
                                                                                     aatttttttatttttttATAATA‑AAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                    <  1:1956849/127‑1 (MQ=255)
                                                                                      ttttttttatttttttaTATTA‑AAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  2:403998/127‑1 (MQ=255)
                                                                                       ttttttttttttttttttttT‑AAAAAA‑AAAAAAAAAAAAATACCC‑TTTAA‑‑‑AATAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  2:3479874/128‑1 (MQ=255)
                                                                                        ttttttttttttttATATTA‑ACAAAA‑AAAAAAAAAAAAAATCCC‑TTAAA‑‑‑AAATAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:3297069/128‑1 (MQ=255)
                                                                                          ttttatttttttatttTA‑AAAAATAAAAAAAAAAACAATCCC‑‑AATAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                <  2:3792918/128‑1 (MQ=255)
                                                                                          ttttAATTTTTTATATTA‑ACAAAT‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                              <  1:3063377/128‑1 (MQ=255)
                                                                                           tttATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑‑‑TAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  1:3248191/128‑1 (MQ=255)
                                                                                             tATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAATCACCTT‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:2775941/128‑1 (MQ=255)
                                                                                             tATTTTTTTATATTA‑AAAAAA‑AAAAAAAAAAAAATCCACTT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                           <  1:114490/128‑1 (MQ=255)
                                                                                               ttttttTATATTA‑AAAAAA‑AAAAAAAAAAAAATAACC‑TTAAA‑‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                           <  1:1444508/128‑1 (MQ=255)
                                                                                               ttttttTATATTA‑AAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAA‑‑‑AAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  2:3035482/128‑1 (MQ=255)
                                                                                                 tttttATATTA‑AAAAAT‑AAAAAAAAAAAAATACC‑‑TTTAA‑‑‑AAAATAAAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  1:1882939/126‑1 (MQ=255)
                                                                                                 tGTTTATATTT‑AAAAAA‑TAAAAAAAAAAAATTCCCTTT‑‑‑‑‑‑AAAATTTAAAAAA‑AAAAAAAAAAAAACTAAAAACTAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                       <  2:3322064/128‑1 (MQ=255)
                                                                                                   tttATATAC‑TCAAAT‑ATAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:3561502/128‑1 (MQ=255)
                                                                                                   ataatattC‑AAAAAA‑AAAAAAAAAAAAATCACCTT‑‑‑A‑‑‑AAAATTAATAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:3426637/122‑1 (MQ=255)
                                                                                                     tataTTA‑ACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                    <  2:3269553/128‑1 (MQ=255)
                                                                                                     taatataaacaAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  2:3933015/120‑1 (MQ=255)
                                                                                                      tatatttaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATTAAAAAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  1:3610189/119‑1 (MQ=255)
                                                                                                      aataataaaaaaT‑AAAAAAAAAAAAAAACCC‑TTAAA‑‑‑AAATAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:883658/119‑1 (MQ=255)
                                                                                                         attaaaaaaa‑aaaaaaaaaaaaATTCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                 <  2:3576826/122‑1 (MQ=255)
                                                                                                          ataaaaaaT‑AAAAAAAAAAAAAT‑AACATTAAA‑‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                 <  1:25059/123‑1 (MQ=255)
                                                                                                              aaaaa‑aaaaaaaaaaaaaaaaCCATTAAA‑‑‑AATAAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa              <  1:1221074/127‑1 (MQ=255)
                                                                                                                  taaaaaaaaaaaCAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAAAACTATTAATTAAAATTCAATATTTTAAAAAATTTTTTTTTTAAAATAAGATATTAAAAAAttatataaa      >  1:3127480/3‑126 (MQ=255)
                                                                                                                  t‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑‑AAAATT‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt     <  1:3812424/128‑1 (MQ=255)
                                                                                                                      aaaaaaaaCAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAA‑TAAAAACAAACATTTTTTTTTAAAAATACAAATAATAAAACATTTATTTTAAAAAAAAAAATATTAAAataaataaaaaaaa    >  1:2989324/1‑118 (MQ=255)
                                                                                                                         aaaaaCAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAAAAAAATAAATTTATAAAAATAAACTATTATAAAAATTTTTTTTTTTAAAAAATATTATTTAATTAATATAAATATAat  >  1:2604645/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                            
TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202353‑202601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑