Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.45.2% 178.1 / 312.4 241intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (26/83);  new base . (39/51);  total (89/152)
Fisher's exact test for biased strand distribution p-value = 4.04e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 279 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202359‑202601
                                                                                                                                 |                                                                                                                   
aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAT‑AAAAAAAAAACAATCCCCtta                                                                                                                    <  1:3314091/128‑2 (MQ=255)
 gTTAGTGTAAATAATTGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCCtt                                                                                                                     <  2:2826374/128‑1 (MQ=255)
 gTTAGTGTAAATAATATAGTTAATGTTAATTAAAATACCAAAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTTTTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                    <  2:2985703/128‑2 (MQ=255)
 gTTAGTGTAAATAATAGTGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaa                                                                                                                   <  2:1078830/128‑3 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                    <  1:3819055/128‑2 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtta                                                                                                                    >  1:3283849/1‑127 (MQ=255)
  ttAGTTTAAAAAATATAGTTAATGTTAATTAAAATAACATAAACTTAATAATTCT‑TAAAATGTATATCCTCGTGTTCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                   <  2:17600/128‑3 (MQ=255)
  ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCCttaa                                                                                                                   >  1:3126808/1‑126 (MQ=255)
    aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCAttaaaa                                                                                                                 >  2:3840125/1‑124 (MQ=255)
    aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCCAttaaaa                                                                                                                 >  2:2981214/1‑124 (MQ=255)
     gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCCttaaaaa                                                                                                                >  1:1628774/1‑123 (MQ=255)
      tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTTGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCttaaaaat                                                                                                               >  2:3201110/1‑122 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aaaaataaaaa                                                                                                       >  2:912992/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACATTAaaaaaaaaaa                                                                                                          >  2:1009301/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑ttaaaaattaaaaa                                                                                                       >  2:3466995/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaaaaataaaa                                                                                                        >  2:2521526/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATACAC‑‑ttaaaaattaaaaa                                                                                                       >  1:2606070/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATTTAGATCCACTTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAAT‑‑ACAATAAAAAAATaaaaaaaa                                                                                                    >  2:1385024/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaa                                                                                                    >  2:3677425/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACATT‑‑‑AAAAATaaaaaaaaaa                                                                                                  >  2:1214077/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                               >  2:3500837/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                               >  2:3702872/1‑128 (MQ=255)
                     tAATGTTTAATAAAAAAACATAAAAATAATAATTATATAAAATTTATACCCTCGT‑TTATATTTTTTTATTTTTTTTTTTTAACAAAA‑AAAAAAAAAAAAACCCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaa                                                                                             <  2:1598071/128‑1 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                             >  2:3231204/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAATCAACTTaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:3617715/1‑128 (MQ=255)
                       tggTTAATTAAATTAAATAAAACTTAATAATTTT‑TTTAAT‑TTTATCCTGGGGTTATATTTTTTTTTTTTTTTTAATTAAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAAAAATTaaaaaaaaaaaaaaaa                                                                                            <  1:3034977/127‑1 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATTAaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:499919/1‑128 (MQ=255)
                        ttttaataaaAATAAAAAAAAATTAAAAATTAT‑TAAAATTTATATAATATTTATATATTTTTTTATTTGTTTATATTCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           <  1:1879241/126‑1 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAACATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:2729753/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           >  2:3139584/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           >  2:3538457/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           >  2:3861398/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑AACAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                           >  2:2294659/1‑128 (MQ=255)
                         ttttattaaAAAAATATAAACTTATAAATTTT‑TAAAATTTATAAACTATTTATATATTTTTTTATTTTTTATTATAAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                          <  1:2489718/124‑1 (MQ=255)
                         gTTAATTAAAATAAAATAAAATTAATAATTAA‑TAAAATTTATATCATAGTTATCTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                          <  1:1884577/128‑1 (MQ=255)
                          ttatttaaAATCCTATAAA‑TTTATAATTAT‑TATAATTTATATACAAGTTATCTAATTTTTAATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaac                                                                                        <  1:2381534/128‑2 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTAACTTCACAAAA‑AAAAAAAAAAAAAACC‑‑‑AAAAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:1511183/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2232916/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTAT‑TATAATATATATAATCGTGATCTATTTAATTATTTATTAATCTAAAAAAAT‑AAAAAAAAAA‑AAT‑‑CAAATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:1425680/1‑126 (MQ=255)
                              ttaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATTAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:3098075/1‑128 (MQ=255)
                              ttaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAATTAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:3580429/1‑128 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  1:483045/1‑123 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAaaaa                                                                                 >  2:3257135/1‑128 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATATATTTATATTCACAAAT‑AAAAAAAAAAAAA‑‑ACAAATTAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  1:310070/1‑123 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCT‑TATAATGAAGATCCTCGTGATCTATTTTTTTATTTGTTTTTATTCACAAAT‑AAAAAAAAAACAATCCTCTTATAAATTAAaaaaaattaaaaaataaaatcaaa                                                                                    >  2:3639578/1‑123 (MQ=255)
                                   aaaacaaaaaaTTAATAATTTT‑TAAAATTTATATACTTTTGTACATATTTTTTATTTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaaca                                                                              <  2:2049109/121‑1 (MQ=255)
                                      acaaaaaaTTAATAAATAT‑TATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                            <  1:1355799/124‑1 (MQ=255)
                                        aaaaaaTTAATAATTAT‑TATAAATTATATCCTCTTTATATATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                            <  1:3059382/126‑1 (MQ=255)
                                          aaaaTTAATAATTTT‑TATAATTTTTATACTAGTTATATTTTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                        <  1:3201110/128‑1 (MQ=255)
                                           aaattAATAATTCT‑TAAAATTAATAAACTCTTTATATTTTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:3265260/125‑1 (MQ=255)
                                            aattAATAATTAT‑TATAATTTATATCATCTTGATCTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:3482799/126‑1 (MQ=255)
                                              ttAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAaaacaaaaaatattt                                                                    >  1:3167922/1‑120 (MQ=255)
                                               taaaaaTTTT‑TATAATTTAGTAACTCGTTATATTTTTTTTTTTTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                    <  2:3599478/128‑1 (MQ=255)
                                                 ataatTAT‑TATAATTTATATCCAGGTGATCTATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                  <  1:3642137/128‑1 (MQ=255)
                                                   aaattt‑tAAAATGTACATCCACGTTTTATATTTTTTTATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                <  1:2906640/123‑1 (MQ=255)
                                                        t‑tATAATTTATATACTCTTTTTTTATTTTTTTTTTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                            <  1:288351/128‑1 (MQ=255)
                                                        t‑tATAATGTATATACTTTTTATATATTTTTTTATTTTTTTTTCTTAACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                          <  1:3147859/128‑1 (MQ=255)
                                                                   ttatcacGTGTTTTATTTTTTTTTTTTTTTATCATAAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                  <  2:3613599/122‑1 (MQ=255)
                                                                    tagatctttttCTATTTTTTTTTTTTTTTAATTTTAAAAAT‑AAAAAAAAAAAAAT‑AACATTAAAAATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                 <  2:449123/118‑1 (MQ=255)
                                                                     ttatttttttaaaTTTTTTTTTTTTTTTATATTAAAATAT‑AAAAAAAAAAAAATTCACTTT‑‑AAAATTTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  2:81037/116‑1 (MQ=255)
                                                                     tactagttatatatttttttattttttTATATTCAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:1190072/117‑1 (MQ=255)
                                                                      tatttttatattttttttttttttttTAT‑TTTAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                               <  1:2287913/116‑1 (MQ=255)
                                                                      acatttttattATTTTTTTTTTTTTTTATTATAAAAAAA‑AAAAAAAAAAAAAATCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:870736/118‑1 (MQ=255)
                                                                      aaaatttatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:103008/118‑1 (MQ=255)
                                                                        attttttatATTTTTTTTTTTTTTTATAAT‑AAAAAA‑AAAAAAAAAAAAATAAACTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  1:604065/120‑1 (MQ=255)
                                                                          ttttttttttttttttttttttttTATAAAAAAAA‑AAAAAAAAAAAAAACCCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                            <  1:496538/120‑1 (MQ=19)
                                                                           ttatcttattatttATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                         <  1:3503929/117‑1 (MQ=255)
                                                                            ttatttattttatATTT‑TTTATATATACAAAT‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                       <  2:1996424/121‑1 (MQ=255)
                                                                             atttatttttttattttttTATTTTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatcttatt                                     <  1:3560551/125‑1 (MQ=255)
                                                                              atattttttttATTT‑TTAATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                     <  1:1173529/124‑1 (MQ=255)
                                                                                aaTTTTTATATTT‑TTTATAATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  1:3354487/127‑1 (MQ=255)
                                                                                 ttttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  2:403998/127‑1 (MQ=255)
                                                                                 aattttttttttttttttttATAAAAAT‑AAAAAAAAAAAAAAACCCATT‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  1:3538457/126‑1 (MQ=255)
                                                                                  tttttttatttttttaTATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:912992/128‑1 (MQ=255)
                                                                                  tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:272589/128‑1 (MQ=255)
                                                                                  tttttttATTT‑TTTATTTTAAAAAAT‑AAAAAAAAAA‑AAAAACCTTTTAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCATATTTTAttttt                                  <  1:2073840/128‑1 (MQ=255)
                                                                                  tttttttATAT‑TTAATCTTAACAAAA‑AAAAAAAAAAAAATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:1115188/128‑1 (MQ=255)
                                                                                   ttttttttttttttATATTAACAAAA‑AAAAAAAAAAAAAATCCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:3297069/128‑1 (MQ=255)
                                                                                   ttttttttttttttATATTAAAAAAA‑AAAAAAAAAAAAAAACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  2:76658/128‑1 (MQ=255)
                                                                                   ttttttatttttttatATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  2:3824318/128‑1 (MQ=255)
                                                                                     ttttatttttttatttTAAAAAATAAAAAAAAAAACAATCCC‑‑AATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                <  2:3792918/128‑1 (MQ=255)
                                                                                     ttttATTTTTTTATAATAACAAAT‑‑AAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                           <  1:2509396/128‑1 (MQ=255)
                                                                                      tttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                               <  1:746761/128‑1 (MQ=255)
                                                                                       ttATTTTTTTATATT‑AAAAAA‑AAAAAAAAAAAAATAAC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:380043/128‑1 (MQ=255)
                                                                                        ttttttttTATATTTAAAAAT‑AAAAAAAAAAAAATACC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  2:2073814/126‑1 (MQ=255)
                                                                                        tATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAATCACCTT‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:2775941/128‑1 (MQ=255)
                                                                                         tttttttTATCTTAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:3008238/127‑1 (MQ=255)
                                                                                          ttttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  2:3035482/128‑1 (MQ=255)
                                                                                            tGTTTATATTTAAAAAA‑TAAAAAAAAAAAATTCCCTTT‑‑‑AAAATTTAAAAAAAAAAAAAAAAAAACTAAAAACTAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                       <  2:3322064/128‑1 (MQ=255)
                                                                                              tttATCTTCACAAATAAAAAAAAAAACAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACACAACAAATTTTTAAAAATACACAAAAAAAACACATTTAATTTTTAAAAAAAAatta                      >  2:2590138/1‑126 (MQ=255)
                                                                                              ataatattCAAAAAA‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAATTAATAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:3426637/122‑1 (MQ=255)
                                                                                               taatataaacaAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  2:3933015/120‑1 (MQ=255)
                                                                                                tataTTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                    <  2:3269553/128‑1 (MQ=255)
                                                                                                 aatttaaaaaaa‑aaaaaaaaaaaaATACCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                  <  2:3046636/120‑1 (MQ=255)
                                                                                                    attaaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                 <  1:222754/123‑1 (MQ=255)
                                                                                                     taaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata               <  1:1511183/124‑1 (MQ=255)
                                                                                                        aaaaa‑aaaaaaaaaaaaaaaaCCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa              <  1:1221074/127‑1 (MQ=255)
                                                                                                        aaaaa‑aaaaaaaaaaaaATACACA‑‑TAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata            <  1:2011034/127‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata        <  1:414404/127‑1 (MQ=255)
                                                                                                                aaaaaaaaaaaaCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa    <  2:977206/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                   
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202359‑202601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑