Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT53.4% 8.3 / 207.4 234intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (32/77);  new base T (46/79);  total (78/156)
Fisher's exact test for biased strand distribution p-value = 2.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.89e-02

Only 100 of 309 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621
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aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCC‑‑attaa‑‑‑aaattaaaa                                                                                                                             >  1:3341020/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCC‑‑ttaa‑‑‑aaattaaaaa                                                                                                                            >  2:3466995/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAATCCCCtt‑‑‑a‑‑‑aaaataaaaa                                                                                                                            >  2:3812424/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaa‑‑‑aaaataaaa                                                                                                                             >  2:2521526/1‑128 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATACAC‑‑ttaa‑‑‑aaattaaaaa                                                                                                                            >  1:2606070/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCACTTGATCTATTTTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAACAAT‑‑ACAATAAA‑‑‑AAAATaaaaaaaa                                                                                                                         >  2:1385024/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATaaaaaaaaa                                                                                                                       >  1:3035482/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATAACATT‑‑‑A‑‑‑AAAATaaaaaaaaaa                                                                                                                      >  2:1214077/1‑128 (MQ=255)
        ttttAAGGTTAATTAAAATAACATAAACTTTATAATTCTTAAAATGTTTATACTCTTTATCTATTTTTTTTTTTTTTTATATTCAAAAATAAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaa                                                                                                                      <  2:3318288/126‑1 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATaaaaaaaaaaaaa                                                                                                                   >  2:3008238/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTATATCCTCGTGATCTAATTATTTATATAATAATCATCACAAAAAAAAAAAAAAACAAAACCaaaaaa‑‑‑aaaaaaaaaaaaaaaa                                                                                                                     >  2:504916/1‑128 (MQ=255)
           tAATGTTTAATAAAAAAACATAAAAATAATAATTATATAAAATTTATACCCTCGTTTATATTTTTTTATTTTTTTTTTTTAACAAAAAAAAAAAAAAAAACCCCC‑‑‑TAA‑‑‑AAAATaaaaaaaaaaaaaaa                                                                                                                 <  2:1598071/128‑1 (MQ=255)
           tAAGGTTAATTAAAATAAAATAAACTTAATAATTATTATAATATAGATCATCTTTATATAATTATTTATTTTTTTATCTTAACAAATAAAAAAAAAACAAT‑‑AAAAATAA‑‑‑AAATTaaaaaaaaaaaaaa                                                                                                                  >  2:1076018/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaa                                                                                                                 >  2:3231204/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaa                                                                                                                >  2:3544626/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATAATATTGATCTATTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAAAAAT‑‑AAAATTAA‑‑‑AAATTaaaaaaaaaaaaaaaa                                                                                                                >  2:1478456/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAA‑‑‑AAAATaaaaaaaaaaaaaaaaa                                                                                                               >  2:2976666/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaa                                                                                                               >  2:3861398/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAATAAAAAAAAAACAA‑‑AACAATTAA‑‑‑AAATTaaaaaaaaaaaaaaaaa                                                                                                               >  2:2294659/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAAAACAC‑‑ATAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:3532206/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTATTAATTTGTTTATCTTCACAAATAAAAAAAAAACAAT‑‑CCAAATAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:3973356/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAAAAACACCTAAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaa                                                                                                             >  2:3684639/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAAATAAAATTAA‑‑‑AAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:217971/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTAAAA‑‑‑ATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                            >  1:2037752/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGATTATCTTCACAAATAAAAAAAAAAAAATCCACAaaaaa‑‑‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:1861461/1‑128 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:888188/1‑126 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCATATAATGTATATACTCTTTATCTATTATTTTATTAGTTTAAAATAAAAAATAAAAAAAAAACAAACAC‑‑‑ATAA‑‑‑AAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:3109161/1‑125 (MQ=255)
                    ttaaAATACAATAAACTTAATAATTCTTATAATGTAGATACTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACAAATAAAA‑‑‑ATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:2737711/1‑128 (MQ=255)
                     taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAATTTTTTATCTTCACAAATAAAAAAAAAAAAAATAAC‑‑CTAA‑‑‑AAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:3792918/1‑125 (MQ=255)
                     taaAATACCATAAAATTAATAAATATTATAATTTTTATCATCGTGTTTTTTTTTTTTATTTTTTTATCTTAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                                        <  2:309209/128‑6 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:3660687/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACC‑‑ATTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:483045/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAATAAAAAAAAAACAATCCCATT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACAaaaa                                                                                                     >  2:3257135/1‑128 (MQ=255)
                        aaTATCATAAATTTAAAAATTATAAAAATTTATATACTCGTGATATATTTTTTTATTTTATTATATTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaactaaaaaca                                                                                                     <  1:3815383/128‑10 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAA‑‑‑AAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:3296566/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTATTTAATTATTTATATTCACAAATAAAAAAAAAACAA‑‑ACAAAATAA‑‑‑AAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:429111/1‑128 (MQ=255)
                         aaaacaaaaaaTTAATAATTTTTAAAATTTATATACTTTTGTACATATTTTTTATTTTTTTAACTTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  2:2049109/121‑1 (MQ=255)
                         aTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaaataa                                                                                                    >  2:798888/1‑121 (MQ=255)
                          aaacATAAAATTAATAATTATTAAAATATACATACTCCTTTACAATTTTTTTATTTGTTTAAATTCAAAAATAAAAAAAAAACAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:2494839/125‑1 (MQ=255)
                            ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaaaaaaaaaaaaataaaaaaaaaa                                                                                                 >  1:3102395/1‑117 (MQ=255)
                            acaaaaaaTTAATAAATATTATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                                <  1:1355799/124‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATTTTCACAAATAAAAAAAAAACAATCCCCTTAAAA‑‑‑ATTAAAAAAaaaaaaaaaaacaaaaaaaaaaaaca                                                                                                  >  2:3361469/1‑128 (MQ=255)
                                aaaaTTAATAATTTTTATAATTTTTATACTAGTTATATTTTTTTTTATTTTTTTATATTCAAAAAAAAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                            <  1:3201110/128‑1 (MQ=255)
                                 aaCTTAAATATTCTTATAATTTTGATCCTCCTTATATATTTTTTTTTTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:2796978/128‑1 (MQ=255)
                                  aattAATAATTATTATAATTTATATCATCTTGATCTATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:3482799/126‑1 (MQ=255)
                                   atttataatTTTTTTAATGTTTATCACTGGGATCTATTTTTTTTATTTTTTATATTCAAAAATAAAAAAAAAAAAAATCCCCTTAAA‑‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                            <  2:3630625/124‑1 (MQ=255)
                                   attAAAAATTTTTATAATTTATATACAATTTATTTATTTTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAAAAATCCCCTTAAA‑‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:2984129/127‑1 (MQ=255)
                                    ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAATAAaaacaaaaaatattt                                                                                        >  1:3167922/1‑120 (MQ=255)
                                      aataaataTTATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTCAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:3370337/128‑1 (MQ=255)
                                      aaaaaatCTTATAATTTATATACTAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                      <  1:840611/122‑1 (MQ=255)
                                                          tagatctttttCTATTTTTTTTTTTTTTTAATTTTAAAAATAAAAAAAAAAAAATAACATTAAA‑‑‑AATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                     <  2:449123/118‑1 (MQ=255)
                                                            tatttttatattttttttttttttttTATTTTAAAAAAAAAAAAAAAAAAAAACCCATAAAA‑‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:2287913/116‑1 (MQ=255)
                                                            aaaatttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:103008/118‑1 (MQ=255)
                                                              tctgtttttATTTTTTTTTTTTTTTATATAAAAAAAAAAAAAAAAAAAAAACCCCTAAAA‑‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:3187591/120‑1 (MQ=255)
                                                              attttttatATTTTTTTTTTTTTTTATAATAAAAAAAAAAAAAAAAAAATAAACTTAAAA‑‑‑AATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:604065/120‑1 (MQ=255)
                                                                 ttttttatttttttattttttTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:543106/123‑1 (MQ=255)
                                                                 ttatcttattatttATTTTTTTATCTTAACAAAAAAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:3503929/117‑1 (MQ=255)
                                                                 ggATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAATAAAAAAAACCTATATTTATAAAAATTACCTATTAAACCAAatttt                                                            >  2:3041419/2‑128 (MQ=255)
                                                                  ttatttattttatATTTTTTATATATACAAATAAAAAAAAAAAAATAAC‑‑ATTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  2:1996424/121‑1 (MQ=255)
                                                                  tatatatttttttattttttTATATAAAAAAATAAAAAAAAAACAATACCCATAAA‑‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:2902958/124‑1 (MQ=255)
                                                                  gATTTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACAC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                            <  1:876666/128‑1 (MQ=255)
                                                                  attatatttttttattttttATAATTAAAAAAAAAAAAAAAAAAAAAACCATT‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  1:1188682/124‑1 (MQ=255)
                                                                    atattttttttATTTTTAATAATAAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                         <  1:1173529/124‑1 (MQ=255)
                                                                     atATTTTTTTATTTGTTTAATTAAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                        <  1:3147003/127‑1 (MQ=255)
                                                                       ttttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAATCACC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:403998/127‑1 (MQ=255)
                                                                        tttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:272589/128‑1 (MQ=255)
                                                                         ttttttttttttTAAAATTTAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:1214077/128‑1 (MQ=255)
                                                                         ttttttATTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAACCCTTTAAA‑‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:373654/128‑1 (MQ=255)
                                                                           ttttAATTTTTTATATTAACAAATAAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  1:3063377/128‑1 (MQ=255)
                                                                                ttttttTATATTAAAAAAAAAAAAAAAAAAAATAACCTTAAA‑‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:1444508/128‑1 (MQ=255)
                                                                                  tttttATATTAAAAAATAAAAAAAAAAAAATACC‑‑TTTAA‑‑‑AAAATAAAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:1882939/126‑1 (MQ=255)
                                                                                    ttttaattaaaaaaaaaaaaaaaaaaaATAACATTAAAA‑‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                            <  1:3562884/117‑1 (MQ=255)
                                                                                    tttATCTTCACAAATAAAAAAAAAAACAATCCC‑‑ATTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAAAAAAAACACAACAAATTTTTAAAAATACACAAAAAAAACACATTTAATTTTTAAAAAAAAatta                                          >  2:2590138/1‑126 (MQ=255)
                                                                                      tatatttaaaaaaaaaaaaaaaaaaATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:3610189/119‑1 (MQ=255)
                                                                                      tATCTTCACAAATAAAAAAAAAACAAACCCCTT‑‑‑A‑‑‑AAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAAAAAACAAAATTAAATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAATTTTTGACa                                     >  2:3514996/1‑128 (MQ=255)
                                                                                         tatttaaaaTAAAAAAAAAAAAATACC‑‑GATAA‑‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  2:3608838/122‑1 (MQ=255)
                                                                                          attaaaaaaaaaaaaaaaaaaaaaaCCATATA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:222754/123‑1 (MQ=255)
                                                                                           taaaaaaaaaaaaaaaaaaaATCCC‑‑ATTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                   <  1:1511183/124‑1 (MQ=255)
                                                                                              aaaaaaaaaaaaaaaaaaaaaCCCATTAA‑‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  1:3246526/127‑1 (MQ=255)
                                                                                                 aTAAAAAAAAAACAATACCATTAAA‑‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                              <  1:3559447/128‑1 (MQ=255)
                                                                                                            aaaaaaattacattaa‑‑‑aaattaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                     <  1:1412104/116‑1 (MQ=255)
                                                                                                             aaaaaaaaaccataa‑‑‑aaattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatat                    <  1:2070784/116‑1 (MQ=255)
                                                                                                              aaaaaaaaatataa‑‑‑aatataaaaaaAAAAAAAAAAAAAAAAATTAAAACAAACTATATTTATTAAAATTCACTATTATACCACATTTTATTTTTAAAATAATATATTTACATAATATATATCTAatat                    <  1:1076018/117‑1 (MQ=255)
                                                                                                               acaataaccttaa‑‑‑aaattaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:1790938/119‑1 (MQ=255)
                                                                                                               aaaaaccacttaa‑‑‑aaattaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:3973429/119‑1 (MQ=255)
                                                                                                                 aaatcacatta‑‑‑aaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:3268553/118‑1 (MQ=255)
                                                                                                                 aaaacccataa‑‑‑aaattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:3459007/120‑1 (MQ=255)
                                                                                                                  ataacctaaa‑‑‑aaattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatagtat               <  1:2148667/120‑5 (MQ=255)
                                                                                                                  ataacaataa‑‑‑aaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  1:3660687/121‑1 (MQ=255)
                                                                                                                  aaaccattAA‑‑‑AAATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:199088/122‑1 (MQ=255)
                                                                                                                   ttaaattta‑‑‑aaattaaaaaaAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:97805/120‑1 (MQ=255)
                                                                                                                   ataacttAA‑‑‑AAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:3016598/123‑1 (MQ=255)
                                                                                                                   acaataaaa‑‑‑aataaaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  2:494671/121‑1 (MQ=255)
                                                                                                                   aacccttta‑‑‑aaattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:701634/120‑1 (MQ=255)
                                                                                                                   aaaaataaatttaaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                 <  2:973331/116‑1 (MQ=255)
                                                                                                                    acccatta‑‑‑aaaaaaaaaaaaaaaaaaaaaaaaaACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat             <  1:2510188/121‑1 (MQ=255)
                                                                                                                     cccatta‑‑‑aaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata            <  1:1656462/122‑1 (MQ=255)
                                                                                                                      caataa‑‑‑aaattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTAATTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:3283849/125‑1 (MQ=255)
                                                                                                                        aata‑‑‑aaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta         <  1:2445837/125‑1 (MQ=255)
                                                                                                                                atataaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg    <  2:942218/126‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: