Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT30.0% 1344.5 / 141.4 859intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (185/374);  new base T (240/0);  total (485/374)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 899 total aligned reads displayed.

AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039
                                                                                                                                     |                                                                                                                                 
    aaataaaattTTTTAATTTAAATCCATTTTTAAAAAAGCCTATGTTTTATGCTTTTTATTATAATTATCAAAATTACAACGCTTTAAAATTGTTTTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTaaa                                                                                                                               <  2:3843459/128‑1 (MQ=255)
      ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTataaa                                                                                                                             >  1:135313/1‑128 (MQ=255)
        aaaaatTTTTCATTTAAACCCATATTAAAAAAAGCCTATGTTTAAGTCTTTTTATTATAATATTCAACATTAAAACGCTTTCAAAGTGTATTTTTTAGGG‑TTG‑‑‑‑‑TTTTTTT‑TTTTTTTTGTAAAAAT‑aa                                                                                                                         <  1:493234/128‑1 (MQ=255)
          aaatTTTTTATTTAAACCCATTTGAAAAAAAGCCAATTTTTTATGTTTTTTATTATACTTATAAAAAATAAAAGCCTTTAAAATTGTATTTTTTTGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑aa                                                                                                                         <  1:2087483/128‑1 (MQ=255)
          aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑aaa                                                                                                                        >  1:1001662/1‑128 (MQ=255)
           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTATTTTTTTTGTAAAAAT‑aaa                                                                                                                        >  1:313661/1‑128 (MQ=255)
           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑‑‑TTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                     <  2:3245999/128‑1 (MQ=255)
            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑aaaat                                                                                                                      >  1:2571503/1‑127 (MQ=255)
              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAATTGTATTTTTTAGGC‑TTGTT‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAg                                                                                                                      <  1:3286526/128‑1 (MQ=255)
              tttactattAAACCAATTTTTAAAAAAGCCATTTTTATATTATTTTTTTTATAATTATAAAAATTAAAACTTTTTAAAATTTTATTTTTTAGTCTTTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                     <  1:2511397/121‑1 (MQ=255)
               ttttATTTAAATCCATTTGTAAAAAAGCCTATGTTTTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTAAAATTGTATTTTTTAGGG‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTa                                                                                                                    <  2:3316589/128‑1 (MQ=255)
                tttaTTTAAATCCATTTTTAAAAAATCATTTGTTATAGTCTTTTTATTATAATTATAAAAATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAg                                                                                                                  <  1:2009590/125‑1 (MQ=255)
                ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACACCGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAAGTatt                                                                                                                  >  2:2839518/1‑126 (MQ=255)
                ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTT‑TAAaaat‑aaaaataata                                                                                                                 >  1:3090405/1‑126 (MQ=255)
                 ttaTTTATAGCCTTTTTTTAAAAAGCCTATTTTCTTGGGTTTTTTTTATAATTATCAACATTACAACGCTTTCAAAGTGTATTTTTTTGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGa                                                                                                                 <  2:1948984/126‑1 (MQ=255)
                   ttttAATGCCATTTTTAAAAAACCATATTTTATTGTCTTTTTATTTTAATTATAAAAATTAAAACGCTTTTAAATTTTTTTTTTTAGGG‑TTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑tt                                                                                                              <  2:3902352/127‑1 (MQ=255)
                    tttAAAGCCATTTGTAAAAAACCCTATGTTCTATGCTTTTAATTATACTTATAAACATTACAACTCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑ttt                                                                                                             <  1:445206/128‑1 (MQ=255)
                     ttaaatgaaTTTTTAAAAAAGACTTTTTTTTATTTTTTTTATTATAATTATCAAAATTTAAACGTTTTAAAATTGTTTTTTTTTTGT‑TTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTg                                                                                                            <  2:82347/120‑1 (MQ=255)
                     ttAAATCCATTTGTAAAAAAGCCTATGTTATACGCTTTTTTTTATACTTTTCAAAATTACAACGCTTTTAAAGTTTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTg                                                                                                            <  2:2257029/128‑1 (MQ=255)
                        aatcaaattGTAAAAAAGCTTTTTTTATTTGCTTTTTATTATACTTATAAACATTAAAACGCTTTAAAAGTTTATTTTTTTGGC‑TTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGAt                                                                                                         <  2:1108702/121‑1 (MQ=255)
                         aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAAAA‑TTTgttta                                                                                                        >  1:1599817/1‑124 (MQ=255)
                          gcaaTTTTTAAAAAATCCTATGTTCTATGTTTTTTATTATACTATTCAAAATTAAAACGGGTTCAAATTGTTTTTTTTTGGC‑TTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCa                                                                                                       <  2:2147668/125‑1 (MQ=255)
                           caaTTTTTAAAAAAGCCTATTTTTTATGATTTTTATTATAATTATAAAAATTACAAAGTTTTCAAAGTGTTTTTTTTAGGCTTTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCa                                                                                                       <  1:1940494/126‑1 (MQ=255)
                             aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAAGTAAGA‑TTTTGATCaaac                                                                                                    >  1:3761412/1‑126 (MQ=255)
                              ttttTAAAAAATTCTTTTTTATAGTCTTTTTATTTTAATTATAAAAATTAAAAAGATTTAAAATTTTATTTTTTAGGC‑TTG‑‑‑‑‑TTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCaa                                                                                                  <  1:1232759/128‑1 (MQ=255)
                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑TAAAGTAAGA‑TTTTGATAAACCaaaaa                                                                                               >  1:825804/1‑127 (MQ=255)
                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTT‑TAAAAAT‑AAAATTAAAA‑TTTGGATCAACAaaaaaat                                                                                             >  1:3376681/1‑125 (MQ=255)
                                      aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAATA‑TTTGGATAAAACaaaaaagat                                                                                           >  2:118637/1‑123 (MQ=255)
                                      aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAACTAATA‑TTTGATAAAACCaaaaaaata                                                                                           >  2:3763579/1‑123 (MQ=255)
                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATAAATA‑TTTTGATAAAACAAAACTTTATCaaa                                                                                      >  2:442925/1‑128 (MQ=255)
                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAAA‑TTTGTATAAACCAAAACAAAATCaaa                                                                                      >  2:3195197/1‑128 (MQ=255)
                                               gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTT‑‑AAAAAAT‑AAAAGTAAAT‑TTTGGATAACCCAAACATATAACAAAAAAttt                                                                                >  1:2980743/1‑128 (MQ=255)
                                               aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAATT‑TTTGTATCAAAAAAAACTATAACaaaaaaa                                                                                  >  2:1490457/5‑128 (MQ=255)
                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATAAAAAAAAt                                                                                 >  2:3623182/1‑128 (MQ=255)
                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAAATAAGA‑TTTTGATCAACAAAAACTATaaaaaaaaaaa                                                                                 >  1:2880087/1‑127 (MQ=255)
                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑‑‑TTTTTT‑TTTTTTTTGTAAAAAT‑AAAACTAAAA‑ATAGGATAAACAAAAACTATAACAAAAAAATTa                                                                               >  1:2397611/1‑128 (MQ=255)
                                                 catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAAGTAATA‑TTTGGGTCAACCAAAACTATTTCAAAAAAAtt                                                                                >  1:3326091/3‑128 (MQ=255)
                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑TAAATTAATA‑TTTTGATAAACAAAAAAAATATAAAAAAAAtt                                                                                >  2:1247579/1‑128 (MQ=255)
                                                   tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGTT‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAAT‑TTTGGATCAACCAAAACTATAAAAAAAAAAta                                                                                >  2:3040107/1‑127 (MQ=255)
                                                   tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAATA‑TTTTTATAAAACAAAAATATATAAAAAAAAtata                                                                              >  1:1427320/1‑125 (MQ=255)
                                                         ttttattttaTTTATAAAAATTTCAATGCTTTTATATTGTTTTTTTTTGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAATAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaaa                                                                        <  1:1083119/128‑1 (MQ=255)
                                                         ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑AAAATTAATA‑TTTGGATAAACAAAAAATATAAAAAAAAAATTaaaaaaaa                                                                        >  2:2409584/1‑128 (MQ=255)
                                                          tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAAGTAAGA‑TTTGTATCAACAAAAAATATATCAAAAAAATTAAAAAAAAt                                                                       >  1:28128/1‑128 (MQ=255)
                                                          tttATTATACTTATAAAAATTAAAACTCTTTCAAATTGTATTTTTTTTGA‑TTG‑‑‑‑‑TTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                      <  1:3574435/128‑1 (MQ=255)
                                                           ttattaTAATTTTATACATTAAAATGCTTTAAATTTGTATTTTTTTTGC‑TTT‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                      <  2:3373291/128‑1 (MQ=255)
                                                              ttataattataaAAAATAAAAAGCTTTAAAAGTGTATTTTTTAGGC‑‑‑‑‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttag                                                                <  2:2564045/128‑1 (MQ=255)
                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAATAAAAATTAATA‑TTTTGAAAAACCAAAAATataaaaaaaaaataaaaaaaaaaatt                                                                    >  2:2011038/1‑124 (MQ=255)
                                                               tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGTTT‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAAAT‑TTTTTATAAACCAAAAATTTTTAAAAAAAATTAAAAAAAAtat                                                                     >  1:877306/1‑127 (MQ=255)
                                                               tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAAAATTTTGTAACAA‑CAAAAATattaaaaaaaaattaaaaaaaaaattt                                                                   >  1:2625896/1‑123 (MQ=255)
                                                               tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAATA‑TTTTGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAtatttt                                                                  >  1:3240055/1‑128 (MQ=255)
                                                                 taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAAAA‑TTTTTTAAAACAAAAAAAATAACAAAAAAATTAAAAAAAAaatttta                                                                 >  2:3552556/1‑128 (MQ=255)
                                                                  agttATCTACATTTCAAAGCTTTCAAAGTGTATTTTTTAGGG‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                                               <  2:3167745/126‑1 (MQ=255)
                                                                  aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGTT‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAATTTAATT‑TTTGTTTAAAAAAAAAATTAATAAAAAAAATTAAAAAAAAtatttta                                                                 >  1:3896472/1‑128 (MQ=255)
                                                                    ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAA‑AAAATTAATA‑TTTGTATAAACAAAAAAATTATAAAAAAAATTaaaaaaaaaaattaatttt                                                             >  1:1305031/1‑117 (MQ=255)
                                                                     tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAAGTAAGA‑TTTGGATCAACCAAAAAAATATCAAAAAAATAAAAAAAAATAGTTTATTTGa                                                            >  2:3117131/1‑128 (MQ=255)
                                                                      aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑AAAATTTAGA‑TTTTGTTGAAACAAAAAATTTTAAAAAAATTTAAAaataatttttttattgtt                                                           >  1:973199/1‑116 (MQ=255)
                                                                       tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAATA‑TTTTGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTAGt                                                          >  1:2755447/1‑128 (MQ=255)
                                                                          aatttaaaaagtttttAAATTTTATTTTTTAGTT‑TTG‑‑‑‑‑TTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCa                                                      <  2:88705/116‑1 (MQ=255)
                                                                          aCATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAATA‑TTTGGAACAACCAAAACATTATAAAAAAAATTAAAAAAAATATTTTTGTTTTGTTTc                                                       >  2:2053126/1‑128 (MQ=255)
                                                                           cATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGTTTTTTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATTAATA‑TTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTGatt                                                          >  1:1386400/1‑126 (MQ=255)
                                                                             ttACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑‑‑TTTTTT‑TTTTTTTTGTAAAAAT‑AAAATTAAGA‑TTTGGATAAACCAAAAATATAAAAAAAAAAATAAAAAAAAAATTTtagtttagttaaaaaat                                                  >  1:3526619/1‑121 (MQ=255)
                                                                               aCAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAATA‑TTTTGTTCAACCAAAACTATAACAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTCaaaa                                                   >  1:117356/1‑127 (MQ=255)
                                                                               aCAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAAATATAAAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCAAATc                                                  >  1:3470633/1‑128 (MQ=255)
                                                                                cAACGCTTTCAAAGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAA‑AAAATAAAGA‑TTTTTTTAAACCAAAAAAAAATAAAAAAAATAAAAAAAAATAATTTATTAGATTTTaaaaaa                                                  >  2:3461473/1‑126 (MQ=255)
                                                                                    gtttttatattgtTTTTTTTTTGT‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                                              <  2:1069595/118‑1 (MQ=255)
                                                                                    gCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAAAA‑TTTTGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTTTTTTATTTTAAAAtataaat                                             >  1:2247540/1‑122 (MQ=255)
                                                                                       ttCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAAAATATTAATTGAGTTTCAAATCTGCatatt                                          >  1:703004/1‑127 (MQ=255)
                                                                                       ttCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAA‑AAAATTAAGA‑TTTGGAAAAACCAAAAAAATTTAAAAAAAATTAAAAAAAATATTTTATTTTAATTTaaaaaaaaaatata                                          >  1:3422797/1‑118 (MQ=255)
                                                                                       ttCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑‑‑TTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTAAATCAAAAAATTTAAAAAAAATATTTTATTTGTGTTTCAAATAGGCAtatata                                        >  1:2060821/1‑128 (MQ=255)
                                                                                           aaGTGTATTTTTTAGGC‑TTGT‑‑‑TTTTTTTT‑TTTTTTTTTTTAAAAT‑AAAAGTAAAA‑TTTGGTTCAACCAAAACTAAATAAAAAAAATTAAAAAAAATAGTTTATTTTAGTTTCAAAAATGCataaaaat                                       >  2:3968203/1‑123 (MQ=255)
                                                                                             gtgtTTTTTTTTGGG‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                                    <  2:487911/128‑1 (MQ=255)
                                                                                              ttttttttttATTG‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACa                                   <  2:3518622/124‑1 (MQ=255)
                                                                                               gtATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTT‑TAAAAAT‑AAAATTAAGA‑TTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATTGTTTAGTTGATTTAAAAATATGAAATTATATTAaaaa                                 >  2:1354548/1‑128 (MQ=255)
                                                                                                tATTTTTTAGGC‑TTG‑‑‑‑‑TTTTTTT‑TTTTTTTTGTAAAAAT‑AAAATTAATA‑TTTGGATCAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTAAATTTATTTAAAAATCTGAATATATTATACaaat                                >  2:3675534/1‑127 (MQ=255)
                                                                                                  ttttttAGGC‑TTGTT‑‑TTTTTTTT‑TTTTTTTTTTAAAAAT‑AAAATTAATA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATTTTTTAGTTTAGTTAAAAATAAGAATATATATTAaaaa                                 >  1:3054244/1‑128 (MQ=255)
                                                                                                      ttAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTT‑TAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAAATATAAAAAAAAAATTAAAAAAAATATTTTAGTTGAATTTAAAATCTGAAAATATAGTACAAAGGAAttt                          >  2:55077/1‑128 (MQ=255)
                                                                                                         ttttttttttttttttttt‑ttttttttGTAATAAT‑AAAAGTAAGA‑TTTGGATCAAATAAATCTATATCAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                             <  1:2195306/117‑1 (MQ=255)
                                                                                                         ggC‑TTG‑‑‑‑TTTTTTTT‑TTATTTTTGTAAAAAT‑AAAATTAAGA‑TTTGGATCAACCAAAACAAAATAAAAAAAATTAAAAAAAAATTATTATTTGATTTTAAAATCTGAATATAAATTACAAATGAATTTAt                        >  2:2984501/1‑128 (MQ=255)
                                                                                                           aggcttgtttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGT‑TTTGGATCAACCAAAACTATATACAAAAAATTAAAAAATATTGTTTAGTTTTGTTTAAAATCTGCATATATATTTCAAAGGAttt                           >  1:3009874/10‑128 (MQ=255)
                                                                                                            tttttttttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTTTATAAATAAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:70233/120‑1 (MQ=255)
                                                                                                            ttgttttttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:3829208/120‑1 (MQ=255)
                                                                                                              ttgttttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:3176040/122‑1 (MQ=255)
                                                                                                               g‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  2:2769691/128‑1 (MQ=255)
                                                                                                                tttttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                      <  1:3630370/124‑1 (MQ=255)
                                                                                                                 ttttttttttt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                     <  2:3732996/125‑1 (MQ=255)
                                                                                                                     ttttttt‑tttttttttTAAAAAA‑AAAAGTAATA‑TTTGGAAAACCCAAAACTTTTTAAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAATATGAATAAAAATAAAAAAGAAATTTATAATaaaa                 >  1:2695342/1‑128 (MQ=255)
                                                                                                                     ttttttt‑ttttttttGTAATAAT‑AATAGTTAGT‑TTTGGATTAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:1599817/128‑1 (MQ=255)
                                                                                                                      ttttta‑tttttttattAAAAAT‑AAAAGTAAGA‑TTTTTATAAAAAAAAATTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:1690888/128‑1 (MQ=255)
                                                                                                                        tttt‑ttttttttttAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAATATGCATTAATATTAAAAATGAATTTATTATTGaataa              >  1:543788/1‑128 (MQ=255)
                                                                                                                          tt‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa            <  1:3965866/128‑1 (MQ=255)
                                                                                                                           t‑ttttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGTTCAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTAAAATATGCAAATATAGTAAAAATGATTTTATGATATAAAAAAAt           >  1:1868797/1‑128 (MQ=255)
                                                                                                                              ttttttttTAAAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATATTAATTTATATTACAAAGGAATTTTTTATATAAAAAAAttg         >  1:183480/1‑126 (MQ=255)
                                                                                                                               ttttttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGAATTAATATTACAAATGAATTTATTTTTGAAAAAAATggt        >  1:1674027/1‑127 (MQ=255)
                                                                                                                                  tttGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:3079488/128‑1 (MQ=255)
                                                                                                                                   ttGTAAAAAT‑AAAAGTAAGT‑TTTGTATCAACCAATAATATATAAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:3693245/128‑1 (MQ=255)
                                                                                                                                   ttGTAAAAAT‑AAAAGTAAGA‑TTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:1900996/128‑1 (MQ=255)
                                                                                                                                   ttGTAAAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:3422797/128‑1 (MQ=255)
                                                                                                                                     gTAAATAT‑ATAAGTAATA‑TTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAATATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  1:1791241/128‑1 (MQ=255)
                                                                                                                                     gTAAAAAT‑AAAAGTATGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  2:3787972/128‑1 (MQ=255)
                                                                                                                                     gTAAAAAT‑AAAAGTAAGA‑TTTGGATTAAAAAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  2:1796299/128‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                 
AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTT‑TTTTTTTTGTAAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑