Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA31.1% 1583.1 / 109.3 956intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (308/331);  new base A (228/61);  total (543/413)
Fisher's exact test for biased strand distribution p-value = 3.85e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 970 total aligned reads displayed.

AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203809‑204064
                                                                                                                                         |                                                                                                                               
  gcaaTTTTTAAAAAATCCTATGTTCTATGTTTTTTATTATACTATTCAAAATTAAAACGGGTTCAAATTGTTTTTTTTTGGCTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCa                                                                                                                                <  2:2147668/125‑1 (MQ=255)
   caaTTTTTAAAAAAGCCTATTTTTTATGATTTTTATTATAATTATAAAAATTACAAAGTTTTCAAAGTGTTTTTTTTAGGCTTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCa                                                                                                                                <  1:1940494/126‑1 (MQ=255)
   acATTTTTTAAAAAACTAATGTTTTATGCTTTTTATTATTATTATCAACATTTAAACCGTTTCAAATTGTTTTTTTTTTGGGTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATc                                                                                                                                 <  2:3617559/127‑1 (MQ=255)
     aTTTTTAAAAAAGCCAATGTTTTATGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAAcc                                                                                                                             <  2:3231505/128‑1 (MQ=255)
     aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAAGA‑‑TTTTGATCaaac                                                                                                                             >  1:3761412/1‑126 (MQ=255)
       ttctAAAAAAGCATATCTTCTAGCCTTTTTAATATACTTAACAACATTAAAACCCTTTCAAAGTGTATTTTTTAGGCTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGT‑‑TTTGGTTGATCCaa                                                                                                                           <  1:3376447/125‑1 (MQ=255)
          tAAAAAATTCTTTTTTATTGGCTTTTTTTTATAATTATAAAAATTAAAACGGTTTAAAATTTTATTTTTTTGGTTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAAc                                                                                                                        <  2:1633102/128‑1 (MQ=255)
          tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGT‑‑TTTGGTTACACCaaac                                                                                                                         >  2:232356/1‑127 (MQ=255)
          tAAAAAAGACTATTTTTTATGCTTTTTATTATACTTATCAACATTAAAAAGCTTTCAAATTTTTTTTTTTTGGGTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAAc                                                                                                                        <  2:187676/128‑1 (MQ=255)
           aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGTCTTG‑‑TTTTTTTTTTTTTTTTATTAAAAAAAATATAAAAATTTTGTATCAAACaaaa                                                                                                                         >  1:2114119/1‑128 (MQ=255)
             aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACtata                                                                                                                    >  1:3091204/1‑128 (MQ=255)
              aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTGGATAAAACaaaaaagat                                                                                                                    >  2:118637/1‑123 (MQ=255)
                 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAGTTATA‑‑TTTGGTTCACCAAAAACTatataa                                                                                                                 >  1:2945444/1‑126 (MQ=255)
                    tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATA‑‑TTTGGTTAAACCAAAAATATTTAaaaa                                                                                                              >  1:1513327/1‑128 (MQ=255)
                       gttttttgttttttATTATATTTTTTAAAATTTAAATGTTTTTAAATTTTTTTTTTTTTGGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAAt                                                                                                          <  2:3871696/119‑1 (MQ=255)
                       gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATTAAATTAAAA‑‑TTTTTAACAACAAAAACAAAATaaaaaaaa                                                                                                           >  2:962352/1‑128 (MQ=255)
                        ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGTACAACCAAAAATATATCaaaaaatt                                                                                                          >  1:3257002/1‑126 (MQ=255)
                         tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑ATTTGAACAACCAAAACTAAATaaaaaaaaat                                                                                                         >  2:3444672/1‑126 (MQ=255)
                         tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAATAAAAGAAAGA‑‑TTTTGGTGAACCAAAACTAGTTCAAAAAAATTa                                                                                                        >  2:1702911/1‑128 (MQ=255)
                         catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAATTAAGA‑‑ATTGGATAAAACAAAAAAAAATAAAAAAAAtt                                                                                                         >  2:3793225/3‑128 (MQ=255)
                         catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGTAAAAAACAAAAATATATAAAAAAAATTa                                                                                                        >  1:2996216/3‑128 (MQ=255)
                          atttgatttttATTATAATTATCAAAATTAAAACGATTTAAAATTTTATTTTTTATGCTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTa                                                                                                        <  1:419782/122‑1 (MQ=255)
                           tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATA‑‑TTTTTATAAAACAAAAATATATAAAAAAAAtata                                                                                                       >  1:1427320/1‑125 (MQ=255)
                             gtttttttATTTTAATTTTAAAAATTTCAATTCTTTAAAATTTTTTTTTTTTGGTTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  2:1049967/125‑1 (MQ=255)
                              tttttttATTATAATTATTAAATTTAAATTGATTTTAAATTTTTTTTTTTTTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaa                                                                                                  <  2:2436734/126‑1 (MQ=255)
                              gttttttATTTTAATTATAAAAATTAAAACGCTTTAAAATTGTATTTTTTAGGTTTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  2:3501180/126‑1 (MQ=255)
                                      ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATTATAA‑‑TTTGGTAAAACAAAAGATataaaaaaaaaataaaaaaaaaaatt                                                                                             >  1:168374/1‑124 (MQ=255)
                                      ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAATAAAAGTAAGA‑‑TTTGTAAAAACAAAAAATATATAAAAAAAATTAAAAAAAAtagttt                                                                                           >  1:2771178/1‑128 (MQ=255)
                                       tttaCTTATAAAAATTAAAACGTTTTATAATTTTTTTTTTTTTGTTTG‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagttta                                                                                          <  2:1112694/126‑1 (MQ=255)
                                         taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGTCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTTGTAAAACCAAAAATTTTAAAAAAAAATTAAAAAAAAtattttat                                                                                         >  2:2998371/1‑127 (MQ=255)
                                         taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTTGATAAAACAAAAATATATAAAAAAAATTAAAAAAAAtattttag                                                                                         >  1:1627199/1‑128 (MQ=255)
                                         taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAAATAAGA‑‑TTTGGATCAACAAAAACTATAACAAAAAAATTAAAAAAAAtattttagt                                                                                        >  2:823944/1‑128 (MQ=255)
                                         taCTTATCAACATTACAACGCTTTCAAAGTGTATATTTTAGGCTTGTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTTGAACAACAAAAACTATAACAAAAAAAATAAAAAAAAtagttta                                                                                          >  2:3914370/1‑128 (MQ=255)
                                           ctttttataaTTATAACGCTTTAAAATTGTTTTTTTTAGTTTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttaggt                                                                                       <  1:2271646/119‑3 (MQ=255)
                                            ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAATTAATA‑‑TTTGTATAAACAAAAAAATTATAAAAAAAATTaaaaaaaaaaattaatttt                                                                                      >  1:1305031/1‑117 (MQ=255)
                                             tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTAAAAATAAATATAAGT‑‑TTTTGATCAACCAAAAATTTATAAAAAAAATTAAAAAAAAtagtttattt                                                                                       >  2:3303120/1‑128 (MQ=255)
                                               taaaaaTTAAAAAGTTTTTAAATTGTTTTTTTTTTGGTTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGt                                                                                   <  2:1329489/123‑1 (MQ=255)
                                                  aCATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTGGAACAACCAAAACATTATAAAAAAAATTAAAAAAAATATTTTTGTTTTGTTTc                                                                                >  2:2053126/1‑128 (MQ=255)
                                                   cATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATA‑‑TTTTGATAAACAAAAACTATTAAAAAAAAATTAAAAAAAATTTTTTATTGTAGtttaa                                                                               >  1:2002006/1‑126 (MQ=255)
                                                   cATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGTAAAA‑‑TTTGGATCAACCAAAACAATATCAAAAAAATTAAAAAAAATATTTTATTTgtttttga                                                                               >  2:355566/1‑121 (MQ=255)
                                                    aTTACAACGCTTTCAAAGTGTATTTTTTAGGCTT‑‑TTTTTTTTTTTTTTTTAAAAAATAAAATAAAGA‑‑ATTTGATAAAAAAAAAAAATATAAAAAAAATTAAAAAAAAatgtatagttttttttaaata                                                                            >  1:769152/1‑117 (MQ=255)
                                                       aCAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATA‑‑TTTGGATAAACCAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTATTTTAGTTTCAAAt                                                                            >  2:3413265/1‑128 (MQ=255)
                                                            gCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTAAAAACAAAATTAAGA‑‑TTTGGTACAACCAAAAAATTATAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTAAAATATGc                                                                        >  1:2057540/1‑128 (MQ=255)
                                                            gCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAGA‑‑TTTGGATCAACCAAAACATAATAAAAAAAATTAAAAAAAAAAGTTTATTTTAGTTTaaaaaaagc                                                                        >  1:2367207/1‑123 (MQ=255)
                                                             cTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTAAAATTAAATTTATA‑‑TTTTGTTAAAACAAAAATATATAAAAAAAAATAAAAAAAAAATGTTATTTTAGTTTAAAAtataaat                                                                      >  2:3976840/1‑122 (MQ=255)
                                                             cTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGAAATA‑‑TTTTGATAAAACAAAACAAATAAAAAAAAATTAAAAAAAATATTTTATTTAAATTTCAAAAATGCata                                                                     >  2:3179503/1‑128 (MQ=255)
                                                               ttCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAATTAATA‑‑TTTGTATAAACCAAAAATATTTAAAAAAAATTTAAAAAAATTTTTTATTTTTGTTTGAAAtaatcaataa                                                                   >  1:83904/1‑119 (MQ=255)
                                                               ttCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAATTAAGA‑‑TTTGGAAAAACCAAAAAAATTTAAAAAAAATTAAAAAAAATATTTTATTTTAATTTaaaaaaaaaatata                                                                   >  1:3422797/1‑118 (MQ=255)
                                                               ttCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTATTTTGTAAAAAAAAAAGTAAGA‑‑TTTTGATAAAACAAAACTATTTAAAAAAAATTAAAAAAAATATTTTAATTTAGTTTAAAAtattaaaatat                                                                  >  1:3568279/1‑118 (MQ=255)
                                                                tCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTAAAAATAAAAGTAATA‑‑TTTGGATAAAACAAAAATAAATAAAAAAAATTAAAAAAAATAATTGATTTGTGTTTAAAAAATGGAaatata                                                                 >  2:725312/1‑128 (MQ=255)
                                                                   atttttttttttttTGGTTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                <  1:886795/120‑1 (MQ=255)
                                                                     gtgtATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGTTCAACCAAAACTATTTAAAAAAAATTAAAAAAAAAAGTTTATTTGAGTTTAAAATATGAATATATAGTAc                                                             >  1:483937/1‑128 (MQ=255)
                                                                         ttttttttttGTTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                                                          <  2:2002006/126‑1 (MQ=255)
                                                                         tATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAA‑‑TTTGGAACAACCAAAACTAAAAAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATTAatataaattaaaa                                                           >  2:3693245/1‑120 (MQ=255)
                                                                          aTTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATA‑‑TTTGTATAAACAAAAAAAATATAAAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAAACTGAAAATAAATTAaaaat                                                         >  1:3321266/1‑127 (MQ=255)
                                                                                 ttttttttttttttttttttttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGATCAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa                                                       <  1:314531/116‑1 (MQ=255)
                                                                                 aGGCTTGTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATA‑‑TTTGGATAAACAAAAAATATAAAAAAAAAAATAAAAAAAATATTTTAATTTAGTTTAAAATCTTAATATTTATTAAAAAGTAtttt                                                   >  2:2978349/1‑128 (MQ=255)
                                                                                 aGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTCAAATCTGAATATATATTACAAAGGAATTTa                                                  >  1:1834164/1‑128 (MQ=255)
                                                                                  ggCTTG‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATTAGAAAAAAATTAAAAAAAATAGTTAATTTTATGTTCAAATCAGCATTATTAGTACTAAGTAATTTAt                                                 >  2:2252726/1‑128 (MQ=255)
                                                                                     ttttggttttttttttttttttttGTAAAAATAAAATTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAAttt                                                   <  1:3638955/120‑1 (MQ=255)
                                                                                     ttgtttttttttttttttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:3829208/120‑1 (MQ=255)
                                                                                     ttgcttttttttttttttttttttGTAAAAATAAATTTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACTAAGGAAttt                                                   <  2:453308/120‑1 (MQ=255)
                                                                                          tttttttttttttttttttttAAAAATAAAAGTAAGA‑‑TTTGGATAAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  1:304733/125‑1 (MQ=255)
                                                                                          tttttttttttttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGACCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  1:1392123/125‑1 (MQ=255)
                                                                                            tttttttttttttttttttAAAAATAAAAGTAAGA‑‑TTTTGATAAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  2:490246/127‑1 (MQ=255)
                                                                                             ttttttttttttttttttAAAAATAAAAGTAATA‑‑TTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATGTTTGTTGGGTTTCAAATATGCATATTATGTACAAAGCAATTtattattta                                           >  1:2581352/1‑125 (MQ=255)
                                                                                             ttttttttttttttttGTAAAAATAAATGTAAGA‑‑TTTGTATAAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                                           <  2:1933972/128‑1 (MQ=255)
                                                                                               ttttttttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTAAAATATGCATATATATTAAAAAGGAATTTAttttataaa                                         >  1:1337551/1‑120 (MQ=255)
                                                                                                    tttttttttGTTAAAATAAAAGTTAGA‑‑TTTGGATCATCCAATACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                    <  1:3186320/128‑1 (MQ=255)
                                                                                                    tttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGTTCAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTAAAATATGCAAATATAGTAAAAATGATTTTATGATATAAAAAAAt                                    >  1:1868797/1‑128 (MQ=255)
                                                                                                    tttttttttGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                    <  2:3354056/128‑1 (MQ=255)
                                                                                                      tttttttGTAATAATAAAAGTAAGA‑‑TTTGGATCAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  1:1006887/128‑1 (MQ=255)
                                                                                                        tttttGTATAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATTTAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                <  2:3140053/128‑1 (MQ=255)
                                                                                                         ttttttAATAATATAAGTAAGA‑‑TTTGTATCAACTAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  2:3748037/128‑1 (MQ=255)
                                                                                                           ttttAAAAATAAAATTAAGA‑‑TTTTGTTCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATAAGAATATTTATTAAAAATGAATTTATTATATAAAAAAATGGATTAg                             >  1:3462726/4‑128 (MQ=255)
                                                                                                           ttGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                             <  2:3045930/128‑1 (MQ=255)
                                                                                                                aaataTAAAAGTAAGA‑‑TTTGTATAAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTAAAATCTGCATATATATTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                         <  1:2710891/128‑6 (MQ=255)
                                                                                                                     tAATAGTAAGA‑‑TTTGGATCAATTATATATATATTAAAAAAATTAAAAATTATAGTTTAGTTGAGTTTAAATTCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:149825/128‑1 (MQ=255)
                                                                                                                     tAAAAGTAAGA‑‑TTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:3691891/128‑1 (MQ=255)
                                                                                                                      aaaaGTAAGA‑‑TTTGGATAAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:178958/128‑1 (MQ=255)
                                                                                                                        aaGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:3523924/1‑128 (MQ=255)
                                                                                                                         attAAGT‑‑TTTGTATAAAACAAATCTTTATTAAAATATTTAAATAAAATATTTTAGTTGAGTTTCATATCTGCTTATATATTACAAATGAATTTATTATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  1:1199975/126‑1 (MQ=255)
                                                                                                                         aGTAAGA‑‑TTTTTATTAAAAAAAACTATATAAAAAATATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  1:2457363/128‑1 (MQ=255)
                                                                                                                          atgtaatttttGGATAAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:2753944/120‑1 (MQ=255)
                                                                                                                            taGA‑‑TTTGTATTAACTAAAACTATATAAAAAAAATTAAAATATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:1400966/127‑1 (MQ=255)
                                                                                                                            taGA‑‑TTTGGATAATTTAATATTATATATAAAAAATTAAAAAAAATTGTTTTGTTGAGTTTCAAATCTGGATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:2629137/127‑1 (MQ=255)
                                                                                                                            aata‑‑TTTGTTTCAACAAAAAATATATCAAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:1810414/125‑1 (MQ=255)
                                                                                                                            aaGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAATAGTTGATAATCCAttttt             >  2:3087954/1‑128 (MQ=255)
                                                                                                                             aGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:618755/1‑128 (MQ=255)
                                                                                                                             aGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:965685/1‑128 (MQ=255)
                                                                                                                             aGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAGGAGTAGATAATCCAttgtgt            >  1:2658375/1‑124 (MQ=255)
                                                                                                                             aGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAATGAATTTATGATAGAAAAAAATGTATTAGTATATAATACAtttttt            >  2:2860206/1‑128 (MQ=255)
                                                                                                                               a‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:53244/1‑128 (MQ=255)
                                                                                                                               a‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAATTTTTTat          >  1:676830/1‑127 (MQ=255)
                                                                                                                               a‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGAGAATCCATTTTTTaa          >  1:2530798/1‑128 (MQ=255)
                                                                                                                                   ttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTATTTAAtt        >  1:111210/1‑128 (MQ=255)
                                                                                                                                   ttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        >  1:2190289/1‑128 (MQ=255)
                                                                                                                                   ttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        >  1:2835010/1‑128 (MQ=255)
                                                                                                                                   ttGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttttttcta        <  1:3900730/128‑5 (MQ=38)
                                                                                                                                      gATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     >  2:1238284/1‑128 (MQ=255)
                                                                                                                                         |                                                                                                                               
AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGA‑‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203809‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: