Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2890GT31.6% 2165.5 / 246.1 1258intergenic (‑572/+271)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base G (274/580);  new base T (335/60);  total (617/641)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1304 total aligned reads displayed.

TAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGATC  >  CP016816/420162‑420416
                                                                                                                                  |                                                                                                                                 
tttaatAACTTAATTAATTTTCAAATTTTTAAATTTTTTTTAAATAATTATATTTTTATAAA‑TTTTATTCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATg                                                                                                                                   <  1:3231104/125‑1 (MQ=255)
tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTTATTAAACGTATATTTATg                                                                                                                                   >  1:3033411/4‑128 (MQ=255)
 tttaaaaatttatttttTTTAAATTTTTTTAATTTTTTTAAATTTAATTTTTTTTAATTAA‑TTTTTTTTTTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGt                                                                                                                                  <  2:1220730/117‑1 (MQ=255)
  ttattattttatttttTTTTAAATTTTTAATTTTTTTTAAAAATATTTTATTTTAATAAATTTTTTTTTTTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGt                                                                                                                                  <  1:835093/118‑1 (MQ=255)
  taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCT‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTTATTAAAATTATATTTAtttt                                                                                                                                 >  1:2807448/2‑128 (MQ=255)
  taatAACTGAATTATTTTACAAATTGTTAAATTATTTTCAAAACATTATCTATAAATCAA‑TTTTATTCTCT‑TTTTTTTTTTTTATTTAAAAAAAATATATATAT‑TTTTATTAAAAATATATTTAtttt                                                                                                                                 >  1:11593/2‑128 (MQ=255)
   aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTGATAAAACTTATATTTAT‑TTtaa                                                                                                                              >  1:490712/1‑128 (MQ=255)
    tttaatttattattTTTAAAATTTTTAAATTTTTTTCAAATTATTTTATATTAATAAA‑TTTTTTTCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTtaa                                                                                                                              <  2:3928849/120‑1 (MQ=255)
        cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTTATAAAACTTATATTTATTTTtaataa                                                                                                                           >  1:885508/1‑128 (MQ=255)
         tttattattTTTTATTTTTTTTAATTTTTTTATAATATTTTTTTATTAATAAA‑TTTTTTTATTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATaaa                                                                                                                          <  1:2727357/125‑1 (MQ=255)
         tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAAATAATTTA‑TTTTATTAAACTTAAATTTAATTTTAATtaaa                                                                                                                         >  2:2131068/1‑128 (MQ=255)
           aaTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAACCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAATAAAATTTA‑TTTTATTAAACGTTTATTTATTTTTAATaaaaa                                                                                                                        >  1:414770/1‑128 (MQ=255)
            attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAATATATTTTA‑TTTTATTAAAAGTATTTTAATTTTTAATAAAAAt                                                                                                                       >  2:3414249/1‑128 (MQ=255)
            attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTCATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAATTAATTTA‑TTTTATTAAACTTATATTTATTTTTAAAAAAAAt                                                                                                                       >  1:765594/1‑128 (MQ=255)
                 ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAAAAAATTTTA‑TTTTATAAAAATTATATTT‑TTTTTTATAAAAATAGaaaa                                                                                                                 >  2:257686/1‑128 (MQ=255)
                 ttttCAAATTGTTAAATTATTTTCAAATCATTATCAATTAATAAA‑TTTTATGCTCG‑TTTTTTTTTTTTATTTTACAAAAAAATAATTTT‑TATGATTATAACTATATTAATTATAAAAAAAAAtacaaa                                                                                                                  >  2:3674871/1‑123 (MQ=255)
                  tttAAAATTGTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTTTTCTTG‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                                                                <  1:3918326/128‑1 (MQ=255)
                         tttttAAATTATTTTTAAATCATTATATATTAATAAA‑TTTTTTTGTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTg                                                                                                          <  2:3228411/125‑1 (MQ=255)
                         ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTTATTAAAATTATATTTATTTTTAATAAAAATTTAaaataatttta                                                                                                         >  1:1546854/1‑123 (MQ=255)
                             tAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTA‑TTTGATTAAACGTTTATTTATTTTTAAAAAAAATGTAAATGAAATTTAAtt                                                                                                      >  1:3087947/1‑128 (MQ=255)
                              taaTTATTTTAAAATAATTATATATTAATAAA‑TTTTTTTTTTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                                                                     <  1:1722953/127‑1 (MQ=255)
                                attattTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑‑TTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGTTAAttttaaa                                                                                                 >  1:2166149/1‑123 (MQ=255)
                                attattTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑‑‑TTTTTTTTTTTTTTAAAAAAAAATATTTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAATTTAATTTT‑Cat‑a                                                                                              >  1:2658132/1‑128 (MQ=255)
                                    ttttCAAATCATTATCTATTAATCAA‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTACAAAAATTTATTTTA‑TTTGTTTAAACGTATATTTTTTTTTAATAAAAATTTAAAAGAAATTGATTTGT‑Aat‑a                                                                                              >  2:2993984/1‑128 (MQ=255)
                                    ttttCAAATCATTATCTATTAATCAA‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAATATAATTTT‑TTTTATTAAACTTATATTTTTTTTTAAAAAAAATTTAAAAAAACGTTaaatttaata                                                                                                >  2:1953893/1‑120 (MQ=255)
                                        aaaaTAATTTTTTATTATTAAA‑TTTTATGCTTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑aataat                                                                                         <  2:3303944/127‑1 (MQ=255)
                                           aTCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTAAAAAAAAT‑TAAATTA‑TTTTAATAAAAATATTTTTTTTTTTTATAAAAATTTAAAAAAAAATTAATTAT‑AAT‑AAttatttta                                                                                     >  1:1012868/1‑126 (MQ=255)
                                            taattaattATTAATTAA‑TTTTATGATAT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AAtaatttaa                                                                                     <  1:3356387/120‑1 (MQ=255)
                                                 aTCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTA‑TTTAATTAAAATTATATTAATTTTTAATAAAAATTTAAAAAAAATTAAATTTT‑AAA‑AATAATTTAATTaaa                                                                                >  2:1350163/1‑128 (MQ=255)
                                                 aTCTATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTTATTAAAAGTTTATTTTTTTTTAATAAAAATGGAAAAAAAATTTAATTTG‑AAA‑AATTATTTTAATAAat                                                                               >  2:3815714/1‑128 (MQ=255)
                                                 aTCTATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATAAAATTTA‑ATTTATTTAAACTTTTTTTTTTTTTAATAAAAATTTAAAAAAAATTTAAATTT‑AAA‑TATAATTTaaataaat                                                                               >  2:2240629/1‑128 (MQ=255)
                                                     aTTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAAAATAATTTA‑TTTTATTAAAAGTAAATTTATTTTTAATAAAAATTGAAAATAATTTTAAATGT‑AAA‑AATAATTTAATTAAttatat                                                                           >  1:255027/1‑128 (MQ=255)
                                                      ttAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATAAAATTTA‑TTTTATTAAAAGTAATTTTATTTTTAATAAAAATGTAAAAGAAATTGAATTGA‑AAT‑AATATTTTAATTAAatataa                                                                           >  1:3868988/1‑127 (MQ=255)
                                                      ttAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTT‑TTTTATTAAAATTATTTTTATTTTTAATAAAAATGTAAAATAATTTAAATTTA‑AAA‑AATATTTTAATTAAatataa                                                                           >  2:3589474/1‑127 (MQ=255)
                                                        aaTCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTA‑TTTTATTAAACTTATTTTTATTTTTAATAAAAATGAAAAAAAAATTTAATTTT‑ATT‑AAAAATTAAATTAAATATATaa                                                                         >  1:1381707/1‑128 (MQ=255)
                                                         aTCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAAAATATTTATTTTTATAAAAATTATATTT‑TTTTTAATAAAAAATTAAAAAAAAATTAATTTTAAAT‑AAAAATTAATTTAATTATaaaa                                                                         >  1:2311090/1‑128 (MQ=255)
                                                           taa‑TTTTATTTTAT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACaa                                                                      <  1:351685/127‑1 (MQ=255)
                                                            aa‑TTTTATTTTAT‑TTTTTTTTTTTTTTTTTATAAAAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAAt                                                                     <  1:3387042/128‑1 (MQ=255)
                                                            aa‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAATATAATTTT‑TTTTTTTAAAGTTATTTTTATGTTTAATAAAAATTAAAAATAAAGTTAATTGA‑ATT‑AAATATTTAATTAAATTTTTAaaaa                                                                      >  1:2432892/1‑128 (MQ=255)
                                                             a‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATTTTTTTTTTTATTAAAAATGTAAAAGAAAGTTAATTGT‑AAT‑AATAATTTAATTatatattaaaaaatt                                                                    >  1:3179941/1‑119 (MQ=255)
                                                               ttttttttttg‑TTTTTTTTTTTTTTTTTAAAAAAATATTATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAATAGAAAGTGAATTTT‑AAT‑AATAATTTAATTAAATATATAAAAATGt                                                                   <  2:2947736/118‑1 (MQ=255)
                                                               ttttttgtttgttttttttttttttttttACAAATATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGATAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATg                                                                    <  2:2520548/116‑1 (MQ=255)
                                                                 tttttttttttttttttttttttttttACAAAAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAATATTGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTa                                                                  <  1:573029/118‑1 (MQ=255)
                                                                 ttattttatttttttttttttttttttACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTa                                                                  <  2:3448052/118‑1 (MQ=255)
                                                                    tttttttttgttttttttttttttACAAAAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGt                                                               <  2:2658132/118‑1 (MQ=255)
                                                                    tttgtattttttttttttttttttACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGt                                                               <  2:3505709/121‑1 (MQ=255)
                                                                    tGCTCG‑TTTTTTTTTTTTTTTTAAAAAAAATAAAATTTT‑TTTTATTAACCTTATTTTTAT‑TTTAATTAAAATTGAAAAAAAAATTAAATTT‑TATAAAAAATTTATTTAATTATTAAAAaatttaattt                                                              >  1:108597/1‑128 (MQ=255)
                                                                     tttttttttttttttttttttttATAATAATATAATTTA‑TTTTATTAAAAGTATATTTATTTTTAATAAAAATTGAAAAGAAATTGAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGtt                                                              <  2:2311599/122‑1 (MQ=255)
                                                                      ttgtttttttttttttttttttATAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGttt                                                             <  2:2070003/123‑1 (MQ=255)
                                                                       tttttttttttttttttttttATAATAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGtttt                                                            <  2:1730242/124‑1 (MQ=255)
                                                                       cgtttttttttttttttttttAAAAAAATTTAATTTT‑TTTTATTAAACTTATATTTATTTTTAATAAAATTGTAAAAAAAATTTAATTGT‑AAT‑AATAATTTATTTAAATATATAACAATTTAtttttt                                                            >  2:3161687/5‑128 (MQ=255)
                                                                         tttttttttttttttttttACATAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTaa                                                          <  2:1463557/126‑1 (MQ=255)
                                                                         g‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTTATTAAACGTATATTTTTGTTTAATAAAAATTTAAAAAAAAGTTAATTGT‑AAA‑TATAATTTAATTAAATAAATAAAAATTTAAATTTTaaa                                                         >  1:2599327/1‑128 (MQ=255)
                                                                          ttttttttttttttttttACAAAAATATAATTTA‑TTTTATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTaaa                                                         <  1:2076512/127‑1 (MQ=255)
                                                                           tttttttttttttttttACAAAAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAATTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                                                        <  1:1794350/128‑1 (MQ=255)
                                                                           tttttttttttttttttACAAAAATATAATTAA‑TTTGATTAAAAGTATTTTTATTTTTAATAAAAATGGAAAAAAAAGTGAATTTT‑CAT‑AATAATTTAATTAAATATATAACAATTTAAGTTTTaaaa                                                        >  1:374823/1‑128 (MQ=255)
                                                                           tttttttttttttttttAAAAAAATATAATTTA‑TTTTATTAAAAGTATATTTTTTTTTAAAAAAAATTGAAAAAAAATTGAATTTT‑AAT‑AATAATTTAATTAAATATTAAAAAATAAAATTTTTaaaa                                                        >  2:3746866/1‑128 (MQ=255)
                                                                            ttttttttttttttttACTATAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                                                       <  1:1923522/128‑1 (MQ=255)
                                                                               tttttttttttttATAAATATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATTAAAATGGAATAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                                                    <  2:2201891/128‑1 (MQ=255)
                                                                                   tttttttttAAAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                                                <  2:305225/128‑1 (MQ=255)
                                                                                     tttttttACAAATATATAATTTA‑TTTTATTATATGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTTAATTTT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt                                              <  2:1823575/128‑1 (MQ=255)
                                                                                     tttttttAAAAAAATATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt                                              <  2:162179/128‑1 (MQ=255)
                                                                                       tttttACAAATATATAATTTA‑TTTGATTAATAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                            <  1:3443633/128‑1 (MQ=255)
                                                                                       tttttACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                            <  2:3098036/128‑1 (MQ=255)
                                                                                       tttttACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                            <  2:404326/128‑1 (MQ=255)
                                                                                           tataaaaaTATAATTTA‑TTTTATTAAATGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                                        <  2:2439860/125‑1 (MQ=255)
                                                                                           tACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                                        <  2:3858720/128‑1 (MQ=255)
                                                                                                atatatAATTTA‑TTTGATTATAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                                   <  1:3641474/126‑1 (MQ=255)
                                                                                                aaaTATAATTTA‑TTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                                   <  1:1495981/128‑1 (MQ=255)
                                                                                                 attttatttta‑tttGATTTAAAGTATATTTATTTTTAATAAAAATTGAAAAGAATGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattta                                  <  2:1692798/121‑1 (MQ=255)
                                                                                                   tattatTTA‑TTTGATTTTTATTATATTTATGTTTTATAAATATTTTAAAGTATGTGAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACt                                <  2:1553001/128‑1 (MQ=255)
                                                                                                       ttccatttttATTAAACATAAATATACGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa                             >  1:1280156/7‑128 (MQ=38)
                                                                                                           a‑tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa                        >  1:3153793/1‑128 (MQ=255)
                                                                                                             tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                            <  2:1056626/107‑1 (MQ=255)
                                                                                                             tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACa                        <  2:731994/127‑1 (MQ=255)
                                                                                                               tGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa                     >  1:1632302/1‑128 (MQ=255)
                                                                                                               tGATTAAAAGTATATTTATGTTTAATAAAAATGGAATAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa                     <  2:491302/128‑1 (MQ=255)
                                                                                                                gATTAAAAGTATATTTATGTTTAATAAAAATGGAATAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaa                    <  2:3540279/128‑1 (MQ=255)
                                                                                                                  tttattgTATTTTTATTTTTAATATAAATGTTAAAGATTTTGTATTGT‑AAT‑AATAATTTAATTAAATATATTAAAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaaaa                  <  2:2790104/122‑1 (MQ=255)
                                                                                                                  ttAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaaaa                  >  2:797286/1‑128 (MQ=255)
                                                                                                                   tAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAATTTAATTGT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaag                 <  1:3588401/128‑1 (MQ=255)
                                                                                                                   tAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAACGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaag                 <  2:1115892/128‑1 (MQ=255)
                                                                                                                     aaCATAAATATACGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTATAAAACTTACTTTTTTGTTTTAATTTAATTTAAAACAAAAAaagaa               >  2:627958/1‑128 (MQ=255)
                                                                                                                       cGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CTT‑ATTAATTTAATTAAATATATAACAATGTAAGTTTTAAAAATTACTTTTTTGTTTTTATTTACTTTAAAACAAAAAAagaaga             >  1:1226471/1‑128 (MQ=255)
                                                                                                                       cGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAagaaga             >  1:66519/1‑128 (MQ=255)
                                                                                                                       agTATATTTATGTTTAATAAAAATTGATAAGAAAGTGAATTTT‑AAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAagaaga             <  1:295699/127‑1 (MQ=255)
                                                                                                                          atatTTATTTTTATTTAAAATGGAAAAGAATGTTAATTGT‑ATT‑TATAATTTAATTAATTATATATAAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCa          <  1:976382/128‑1 (MQ=255)
                                                                                                                          atatTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCa          <  2:3262372/128‑1 (MQ=255)
                                                                                                                            atTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCAtt        >  1:2012215/1‑128 (MQ=255)
                                                                                                                             tttATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCAttt       >  1:3824736/1‑128 (MQ=255)
                                                                                                                             tttATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCAttt       <  1:3274437/128‑1 (MQ=255)
                                                                                                                              ttATTTTTAATAAAAATTGATAAGTAAGTGTATTGT‑CAT‑ATTAATTTATTTAAATATATAACAATGTAAGTTTTAAAACTTAATTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCaaaat      <  1:2240629/128‑5 (MQ=255)
                                                                                                                              ttATTTTTAATAAAAATTGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCAtttt      <  1:1852577/128‑1 (MQ=255)
                                                                                                                              ttATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCAtttt      >  1:3551076/1‑128 (MQ=255)
                                                                                                                               tATGTTTAATAAAAATGGAAAAGATAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCaaaatg     <  2:1903490/128‑6 (MQ=255)
                                                                                                                               tATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTTTAAAACAAAAAAAGAAGATCAtttta     >  2:929306/1‑127 (MQ=255)
                                                                                                                                aTGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGa    <  2:3357062/128‑1 (MQ=255)
                                                                                                                                 tGTTTAATATAAATTGAAAAGATAGTTAATTGT‑AAT‑AATAATTTAATTAAATATATAAAAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGAt   <  2:1288449/128‑1 (MQ=255)
                                                                                                                                  gTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGAtc  >  1:2996439/1‑128 (MQ=255)
                                                                                                                                  gTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGAtc  >  2:563127/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                 
TAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTA‑TTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGT‑CAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGATCATTTTGATC  >  CP016816/420162‑420416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑