Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT34.3% 2204.8 / 254.1 1256intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (672/118);  new base T (10/402);  total (685/571)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1277 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007
                                                                                                                                |                                                                                                                                         
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTATAAAg                                                                                                                                           >  1:2335894/1‑128 (MQ=255)
taataTCTCCTTAAAAATTTATATATATTAGTGAACATAAGGATGTATAATACAAAATAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTATAAAg                                                                                                                                           >  2:1218398/1‑128 (MQ=255)
   tataTCCTTAAAAATATATATATAATATTGAACATAAGGAATTATAATAAAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGaaa                                                                                                                                        <  2:404280/128‑1 (MQ=255)
    atCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAAATCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGaaaa                                                                                                                                       <  1:1097836/128‑1 (MQ=255)
     tctaCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGaaaaa                                                                                                                                      <  1:3050194/128‑1 (MQ=255)
        ccTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACACCCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAat‑at                                                                                                                                  >  1:2396056/1‑128 (MQ=255)
             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑Ca‑a                                                                                                                          >  2:587510/1‑128 (MQ=255)
              aaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑c                                                                                                                       >  1:783397/1‑128 (MQ=255)
               aaTTTATTTATATTTTTGAAATTAAGGTTGTTTAATAAAAATTAATAATAACTGTAAAACCCAAATTCCCCTTTAAAATCAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑t                                                                                                                    <  1:1801451/128‑1 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑t                                                                                                                    >  1:2612119/1‑128 (MQ=255)
                aTTTATATTTTATTGTGAATTTAATTATTTTTAATAAAAATTAATAATAACTGTACAAACCAAAATCCCCTTTAAAATAAAAA‑AACATAAAATTAACATTAATTTTTTTAATAAAAAT‑Atttaaaatt                                                                                                                          <  1:2195221/128‑8 (MQ=255)
                aTTTATATATATTTTTGTAATTAAGGATGTATAATACAAATTAATAATAAATTTAAAACCCAAATTCCCCTTTAAATTAAAAT‑AACATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tt                                                                                                                   <  1:2790515/128‑1 (MQ=255)
                aTTTATATATATTATTTAAATTTATTATTTATAATAAAAATTAAAAAAAACTTTAAAACCCAAATTCCCCTTTAAAATCAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑A‑‑tt                                                                                                                   <  1:874315/128‑1 (MQ=255)
                 attATATATATTTGTTTAATTAAGGATGTATAATAAAAATTAATAATAACTGTAAAACCCAAATTTCCCTTTAAATTTAAAT‑TAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑T‑CA‑A‑‑A‑‑ttt                                                                                                                  <  1:2679686/127‑1 (MQ=255)
                    atatatatAATTGAACATAAGGCAGAAAAATACAAATAAATAAAAACTGTTCAACCCAAAATCCCCTTTAAAATTAAAT‑AACAATATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttt                                                                                                               <  2:2329013/128‑1 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttttttt                                                                                                           >  2:2996645/1‑128 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttatttt                                                                                                           >  2:1961507/1‑128 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttttttt                                                                                                           >  1:627675/1‑128 (MQ=255)
                          atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttttttttt                                                                                                         >  2:3115823/1‑128 (MQ=255)
                                   cTTAAGGATGTATAATACAAATTAATAATAACTGTACAAACCAAATTACCCTTTAAATTCAAAT‑AAAATTATATAAAGATAAATTTTTTAAAGAAAAAT‑AAT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAc                                                                                                <  1:353432/128‑1 (MQ=255)
                                    ttaatgttttataATAAAAATTAATAATAAATGTAAAAACAAAATTACCCTTTAAATTTAAAT‑AAAATTTTATAAATTTTAATTTTTTAAATTAAAAT‑TTT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACt                                                                                               <  1:576884/119‑1 (MQ=255)
                                    ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttatttttttttataaaaa                                                                                               >  2:1521706/1‑121 (MQ=255)
                                      aattaTGTATAATAAAAATTAAAAATAAATTTAAAAACCAAAATACCCTTTAAATTAAAAA‑AAAATTATATAAATATAAATTTTTTTAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTaa                                                                                             <  1:2740648/124‑1 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑tttttttttttttttttttttaaa                                                                                             >  1:17573/1‑120 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑CT‑TTTTTTTTTTTTTTTTGTAACTaa                                                                                             >  2:321541/1‑128 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑ttaattttttattatttataaaaaa                                                                                            >  2:1305247/1‑119 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAAc                                                                                            >  1:1590139/1‑128 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTT‑GAACTAACa                                                                                           >  2:2398153/1‑128 (MQ=255)
                                          aTGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑CT‑TTTTTTTTTTTTTTTTGAAACTAACat                                                                                          >  1:19005/1‑128 (MQ=255)
                                           tgttaaataCAAATAAATAAAAAATTTACAACCAAAATTACCCTTAAAATTAAAAA‑AAAATTATATAAATTTAAATTTTTTAAATAAAAAT‑ATA‑A‑AA‑A‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACAtata                                                                                       <  2:2841124/123‑1 (MQ=255)
                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTTGAAATAAAAtata                                                                                       >  2:2665494/1‑128 (MQ=255)
                                            gTATAAAACAAAATAATAATAAAATTACAACCAAAATTACCATTTAAATTAAAAT‑AACATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACAtata                                                                                       <  2:247843/128‑1 (MQ=255)
                                             taatataaaaaataaaaaAAAATTTACAACACAAAATACCCTTTAAATTTAAAT‑AAAATTATATAAATAAAAATTTTTTAAATAAAAAT‑ATTAA‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACAtata                                                                                       <  2:3316184/124‑1 (MQ=255)
                                                aataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAAattt                                                                                  >  2:777996/1‑128 (MQ=255)
                                                 ataAAAATTAATAATAAAAGTACAACCCAAATTCCCCTTTAAAATCAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑CT‑TTTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                   <  2:1592187/128‑1 (MQ=255)
                                                 aaaaaaaTTAA‑AAAAACTTTACAACACAAATTTCCCTTTAAATTAAAAT‑AAAATTTTAATAATTTAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑AATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                   <  1:743413/124‑1 (MQ=255)
                                                  taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTa                                                                                 >  2:3248692/1‑128 (MQ=255)
                                                  taCAAAATAATAAATACTTTACAACCCAAATTACCATTTAAATTAAAAT‑AAAAATATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑CA‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                  <  2:2602626/128‑1 (MQ=255)
                                                    cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTAca                                                                               >  1:2949580/1‑127 (MQ=255)
                                                       aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CT‑A‑‑C‑‑TTTTTTTTTTTTTTTTTTAAGTAAAATATATTTTTAACAat                                                                            >  2:2547283/1‑128 (MQ=255)
                                                        ttAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTATTTTGTAACTAACATATAAattaaaaaatt                                                                           >  1:1517733/1‑120 (MQ=255)
                                                         taataataaATGTACAAAACAAATTATCATTTAAATTAATAT‑AAAATTATATAAATATAAAATTTTTAAATAAAAAT‑TTT‑A‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAatta                                                                          <  1:2983488/128‑1 (MQ=255)
                                                           cccacccaccaaCAAACCAAAATCCCCCTTAAAAACAAAA‑AAAAAAAAAAAAACATAAAATTTTTAAACAAAAAT‑ATA‑A‑CA‑A‑‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  1:1319174/117‑1 (MQ=255)
                                                           ataataaATTTTAAACCCAAATTCACATTTAAATTCAAAT‑AAAATTATATTAATTTAAATTTTTTAAATAAAAAT‑ATT‑A‑‑A‑A‑‑A‑‑ATTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAAttatta                                                                       <  2:1808416/128‑1 (MQ=255)
                                                            taataaCTTTAAAAACAAAATTACACTTTAAATTAAAAT‑AACATTATATAAATATAAATTTTTTAAAGAAAAAT‑ATT‑A‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  1:2075846/128‑1 (MQ=255)
                                                            taataaATTTAAAACCAAAATTACAATTTAAATTAAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  2:810640/128‑1 (MQ=255)
                                                             aataaATTTACAAACCAAATTCAAATTTAAATTTAAAA‑AACATTATATAAATATTAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                     <  1:2909292/128‑1 (MQ=255)
                                                              ataaATTTACAACCAAAATTTCACTTTTAATTAAAAT‑AAAATTATATAAATATAAAATTTTTAAATAAAAAA‑ATTAA‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAg                                                                      <  2:467170/128‑1 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTACAAattattttaa                                                                    >  1:528821/1‑124 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTATGGAACTAACATATAATTTTAAAAATAATTAGaa                                                                    >  2:187062/1‑128 (MQ=255)
                                                                aaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAAAATATAATTTTACAAATTATTAAaat                                                                   >  1:3247813/1‑128 (MQ=255)
                                                                 aatttaaaaacaaaaTTACACTTTAAATTAAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                  <  1:468978/116‑1 (MQ=255)
                                                                    taaccaCCCAAATTCCCATTTAAATTAAAATAAAAATTAT‑TAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttca                                                               <  1:1249089/123‑1 (MQ=255)
                                                                    gTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTTGAACTAACAAAAAATTTTAACAATTATTATaatttaa                                                               >  1:810640/1‑126 (MQ=255)
                                                                         actcAAATTACCCTTTAAATTCAAAT‑AAAATTATATAAAGATAAATTTTTTAAATAAAAAT‑TTTAA‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                           <  2:1093780/125‑1 (MQ=255)
                                                                          ccaaaaTTACACTTTAAATTAAAAT‑TACAATATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑AA‑A‑‑CT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                          <  1:3023609/125‑1 (MQ=255)
                                                                              atattataatttaaTTCATAA‑AATATTATATAAAGTAAAATATTTTTAATTAAAAT‑AAT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                     <  2:2893521/116‑1 (MQ=255)
                                                                               atatcccTTTTAATTAAAAT‑ATAATTTTTTAAATTTAAATTTTTTAAATAAAATT‑ATT‑A‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  1:2146923/124‑1 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGTAAAAAACAAATAAATTAAACAATAATTAAaattacaaattaaaaaat                                                    >  1:708893/1‑121 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATg                                                   >  1:1000948/1‑128 (MQ=255)
                                                                               aTTCCCATTTAAATTCAAAT‑AACATTATATAAAGAATAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:3044036/128‑1 (MQ=255)
                                                                                attcccTTTTAATTATAAT‑TAAATTTTTTAAAAATAAATTTTTTAAATAAAAAA‑TAT‑A‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATg                                                   <  2:943735/125‑1 (MQ=255)
                                                                                 tCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑‑TTTTTTTTTTTTTTAGGAACTAACATATTATTTTACAAAATATTATAAATTAAATTAGACATATGaa                                                 >  2:1708291/1‑128 (MQ=255)
                                                                                   cccTTTAAATTCAAAT‑AACATTATTTAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑‑‑TTTTTTTGTTTTTGGGAACGAACATAAAATTTTACCAAGTATTAGTATTTCAATTGCACAGATGAATTg                                              >  1:3307289/1‑128 (MQ=255)
                                                                                       tttaaTTAAAAA‑AAAATTTTATAAATTTAAATTTTTTTAAATAAAAT‑TTT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                            <  1:144632/125‑1 (MQ=255)
                                                                                       ttAAATTATAAT‑AAAATTATATAAAGATAAATTTTTTAATTAAAAAT‑TTT‑T‑CA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTCCACAGATGAATTGAt                                            <  2:3065263/128‑1 (MQ=255)
                                                                                        tAAATTCAAAT‑AACAATTTATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  2:2769208/128‑1 (MQ=255)
                                                                                         aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATAAAATTTTACCAATTATTTGATTTTCAATTTCACAAATTAATTGAttt                                          >  1:2545668/1‑128 (MQ=255)
                                                                                         aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAAAATTAAATTTTACCAATTATTATAATTTAAATTTAACAGATTAAttatttt                                          >  1:2019602/1‑123 (MQ=255)
                                                                                         aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACATATTAAtttaatt                                          >  2:88191/1‑123 (MQ=255)
                                                                                         aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTATTTTAGAAATAAAAAATAATTATACCAATTATTATAATTTAAATTTAAAAAATTAATAGAtta                                          >  1:1956928/1‑127 (MQ=255)
                                                                                         aaaTTCAAAT‑AAAATTATTTAAATATATATTTTTTATATAAAAAT‑ATT‑T‑AT‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                          <  2:167284/128‑1 (MQ=255)
                                                                                          aaTTAAAAT‑AAAATTATATAAAGATAAAATTTTTAAATAAAAATAATA‑A‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                          <  2:2724495/128‑1 (MQ=255)
                                                                                           aatCAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                       <  2:2026244/126‑1 (MQ=255)
                                                                                            ttaaaaT‑ATAATTTTATAAATATAATTTTTTTTAATAAAATT‑ATT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                       <  1:186802/125‑1 (MQ=255)
                                                                                              taaaT‑AAAATTATATAAATTAAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                     <  1:417032/127‑1 (MQ=255)
                                                                                              aaaaT‑AAAATTATATAAATATAAATTTTTTAAATAAAAAT‑ATT‑A‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                     <  2:2949580/127‑1 (MQ=255)
                                                                                               aaaT‑TATATTATAAATATATAAATTTTTTAAATAAAAAA‑ATA‑A‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                    <  2:733523/128‑1 (MQ=255)
                                                                                                        ttATATAAAGATAAATTTTTTAAAGAAAATT‑ATT‑A‑CA‑A‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTc                          <  2:3149469/128‑1 (MQ=255)
                                                                                                          aataaataaTAAATTTTTT‑AAGATAAAT‑ATT‑ATAA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATGGATTTCTTCTAATAATTTGTc                          <  1:961058/120‑1 (MQ=255)
                                                                                                           ttttatttttaaTTTTTTTAATAAATAT‑TTT‑A‑AATA‑‑T‑‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTc                          <  1:2249556/118‑1 (MQ=255)
                                                                                                           tataAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTAAATTTCACAGATGAATTGATTTCTTATAATAATTTGTCt                         >  2:1004459/1‑128 (MQ=255)
                                                                                                           tataAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTAAAAGATGAATTGATTTCTTCTAATAATTTTTCt                         >  2:1147588/1‑128 (MQ=255)
                                                                                                           aataaatataaatTTTTTAAATAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                         <  2:1762963/127‑1 (MQ=255)
                                                                                                              aaaGATAAATTTTTTAAATTAAAAT‑ATTAA‑AA‑A‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                       <  1:3087463/128‑1 (MQ=255)
                                                                                                              aaaGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAAAAACATAAAATTTTAAAAATTATTAGAATTTAAATTTAAAAAATTAATTTATTTATTATAAAAAttattatatt                      >  1:1393546/1‑120 (MQ=255)
                                                                                                               aaGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑CT‑TTTTTTTTTTTTTTTTTGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTTCACAGATGAATTGATTTCTTATAATAATTTTtatata                      >  1:1166234/1‑128 (MQ=255)
                                                                                                                  aTAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑CTTTTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTACAAATTATTATAATTTAAATTTCACAGATTATTTTATTTATTCTAATAATTTTTCattata                    >  2:354857/1‑128 (MQ=255)
                                                                                                                  aTAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑CTTTTTTTTTTTTTTTTTTGGAACTAACATTTAATTTTACAAATTTTTAGAATTTAAATTTCACAAATTAATTTATTAGTTATAATAATTTGtatataat                    >  2:2197876/1‑126 (MQ=255)
                                                                                                                   tAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACAAATAATTTTACCAATTATTAGAATTTCAATTTAACAGATTAATTTATTTATAATAAAAAtttttagaacgtaag                 >  1:3126934/1‑116 (MQ=255)
                                                                                                                    aaaaTTTTTTAATAAAAAT‑ATT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                <  1:2479346/128‑1 (MQ=255)
                                                                                                                    aaaTTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTATAATTTAAATTTAAAAGATGAATTTATTTATTATAATAATTTTTATATATTGAtt                >  2:1430460/1‑127 (MQ=255)
                                                                                                                      aTTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTTCAAATATTAATTGATTTATTATAATTATTTGTATATTTATAtttt              >  2:2260015/1‑128 (MQ=255)
                                                                                                                        tttttAAATAAAAAT‑ATT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt            <  1:2832877/128‑1 (MQ=255)
                                                                                                                        tttttAAATAAAAAA‑TTT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt            <  2:647454/128‑1 (MQ=255)
                                                                                                                         ttttAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAAAAAATAATTTTACCAATTATTAGATTTTAAATTTCACACATAAATTTATTTATTATATAAATTTGTATATATTTTTGttttt           >  1:3175399/1‑128 (MQ=255)
                                                                                                                          tttAAATAAAATT‑TTT‑A‑TA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt          <  2:1354947/128‑1 (MQ=255)
                                                                                                                           ttAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTAAATTTAACATATTAATTTATTTATTCAAATAATTTTTCTAAATATATTTTTTTta         >  1:1700022/1‑128 (MQ=255)
                                                                                                                             aaaTAAAAAT‑ATT‑T‑AA‑A‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata       <  2:2100422/128‑1 (MQ=255)
                                                                                                                                gAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACAGATGAATTTATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatatat    >  2:518127/1‑126 (MQ=255)
                                                                                                                                |                                                                                                                                         
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAAT‑ATT‑A‑CA‑A‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑