Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.5% 245.3 / 166.5 373intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (122/74);  new base A (32/138);  total (156/217)
Fisher's exact test for biased strand distribution p-value = 1.48e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 430 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604
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aagtaGTGTAGTTAGTTTAAATAATTGTTTTAAGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                    <  1:575358/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                    <  1:910457/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                    <  2:871759/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTATATTATTTTTTTATCTTAACAAATAAAAAAAAAAc                                                                                                                                    >  2:2460813/1‑128 (MQ=255)
  gtagtGAAGTTAGTTTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaa                                                                                                                                  <  2:1078936/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                                 <  2:613888/128‑1 (MQ=255)
    attGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                <  1:3156154/126‑1 (MQ=255)
    agttaagttaGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                <  2:2505338/128‑1 (MQ=255)
    agtGAATTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACAATAAACTTAATTATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                <  1:1028063/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTAAATAAATATTATAAATTATATAATAATTATCTATAATTTTATTTATTTATATTAAAAAATAaaaaaaaaaaaaaa                                                                                                                                >  1:111158/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                >  2:2896286/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                >  1:3117247/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAaaaaaaaaaaaaaaaaaa                                                                                                                                >  1:1662004/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATAATTATATTTATTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                >  2:3269201/1‑128 (MQ=255)
    agtGAAGTTAGGGTTAATAATTGCGTTAATGTTAAATAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAATACAATc                                                                                                                                <  1:1418325/128‑1 (MQ=255)
     gtGAAGTTATTTTAAATACTAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                               <  2:3240911/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAGATCCTCTTGATCTATTTTTTTATTTCTTTATCTTCACAAATAAAAAAAAAACAAtaa                                                                                                                               >  1:1198610/1‑126 (MQ=255)
     ctgtaGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                               <  2:3041796/124‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATacc                                                                                                                              >  1:2190613/1‑128 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATATTATATTATAATATTCACAAATAAAAAAAAAAAAAtaca                                                                                                                              >  1:1248244/1‑125 (MQ=255)
        aaGTTCTTGTAAATAATAGAGGTTAGGTTTATTTAAATACCATAAACTTAAAAATTCATAAAATGTACAACCTCCTGATCTATTTTTTTTTTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                            <  2:2254385/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                            <  1:1936041/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTAATAATAAAAATCCTCAAAATCTATAAAATTATAAATATAACATCACAAATAaaaaaaaaaaaaaaccaa                                                                                                                            >  1:2026179/1‑122 (MQ=255)
         aGTTATTTTAAATTAAATAGTTAATGTTAATTAAAATAACATAAACTTTATAATTCATATAAAGTAGTTACTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                           <  2:259643/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                           <  1:436633/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                           <  2:2117023/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTATTTTATATTCAAAAATAAAAAAAAAAAAAAcccaaa                                                                                                                           >  1:1883145/1‑125 (MQ=255)
          gTTATTGTAAATAATATAGTATAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                          <  2:700084/128‑2 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTATTTATTTGTTTATCTTAAAAAATAaaaaaaaaaaaaaaaaataa                                                                                                                          >  1:1550335/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCTTAAACTATAATTATAAATTATAATATAAACAAATAaaaaaaaaaaaaaaaaaaaa                                                                                                                          >  1:2448494/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTAATATGTATATCATCACAAATAAAAAAAAACAATCACCttaaa                                                                                                                        >  1:2757621/1‑125 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTAATATATCTTCACAAATAAAAAAAAAACAAACCCAttaa                                                                                                                         >  1:292350/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcacattaa                                                                                                                         >  1:3041245/1‑121 (MQ=255)
           ttAGGGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTATTATAATGTAGATCCTCGTGTTCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCttaa                                                                                                                         <  1:2117883/128‑3 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAaaaaaaaaaaaaaaccataaaaa                                                                                                                       >  1:2941342/1‑117 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGAACTATTATTTTATTTGTATATCTTAAAAAAAAAAAAAAAAAAAATcacattaaaa                                                                                                                       >  2:1241901/1‑119 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTATATTTTTATTTAATAATCTTAACAAATAAAAAAAAAACaaaaaaaataaaa                                                                                                                       >  1:1455880/1‑117 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACCtaaaaaa                                                                                                                      >  2:2743476/1‑122 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAAATCTTATAATTTAGATCCTCTTGATCTATTTTTTTATATATTTATATTAACAAATAaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                                      >  1:659849/1‑116 (MQ=255)
                 tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCAttaaatatta                                                                                                                   >  2:2558696/1‑120 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCttaaaaataaaa                                                                                                                 >  1:2978128/1‑118 (MQ=255)
                     tattaGAGTTAAGGTTTATTAAAATACCATAAACTTAATTATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAATAAACAATCAC‑‑Attaaaaattaaaaa                                                                                                          >  1:2618536/4‑128 (MQ=255)
                     taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAAAAAAAAAAAACAATCACC‑‑ttaaaaattaaaaa                                                                                                          >  2:2870174/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAC‑‑Ttaaaaattaaaaaa                                                                                                         >  2:2620495/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑AATAAAAAATaaaaaaaa                                                                                                       >  2:1761662/1‑128 (MQ=255)
                            gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                   >  1:2483325/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAAAAAAAAAAAAAAAAACAAC‑‑TAAAAAAATaaaaaaaaaaaaaa                                                                                                 >  1:1752800/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATACTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAAAAC‑‑‑TAAAAAATtaaaaaaaaaaaaaa                                                                                                >  2:754908/1‑128 (MQ=255)
                               taGGTTAATTAAAAATCAATAAAATTTAATAATCTTATAAACTACAACCCCGTTATCTATTTTTTTATTTTTTTATCTTAAAAAAAAAAAAAAAAACAATCCCCTTT‑‑AAAATTaaaaaaaaaaaaaaa                                                                                                <  2:1855355/127‑1 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                              >  2:2684617/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaa                                                                                             >  2:2707208/1‑128 (MQ=255)
                                  tttaattaaAAAACCAAAAAAATAAAAATTTTTTTAATTTATATACTTTTTATCTTTTTTTTTTTTTTTTTTATTTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  1:3299482/127‑1 (MQ=255)
                                  tttaaataaAAAAAAATAAAATTAAAAATTTTTAAAATTTATATACTCTTTTTATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  2:2758206/127‑1 (MQ=255)
                                  gTTAATTAAAAAACCATAAAATTAATAAATATTATAAATTCTACCCTCGTGATTTTTTTTTTTTTTTGTTTATTTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  1:3086596/128‑1 (MQ=255)
                                   ttaatttaAAAAACATAAAATTAAAAATTATTATAATTTATATCCTCTTTAATTTTTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  2:241237/128‑1 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTAATTTATAATTTTAATATATACACAAAAAAAAAAAAAACAAACCAC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:27357/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                          <  2:320236/101‑2 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACATTAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:2681280/1‑128 (MQ=255)
                                      attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAAAT‑‑CAAATAAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:178224/1‑127 (MQ=255)
                                       tttaaaTATAATAAAATTAATAATTATTTTAATTTATATCCTCGTTATCTATTTTTTTTTTTTTTTATTTTAACAAAAAAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaac                                                                                        <  2:2026179/125‑3 (MQ=255)
                                        taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATAAC‑‑AATAAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:383668/1‑125 (MQ=255)
                                        taaAATAACAAAAAATTAAAAAATCTTATAATTTATTTCCTTGTTTAATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                       <  1:2887794/128‑1 (MQ=255)
                                         aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCACATAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:783334/1‑126 (MQ=255)
                                         aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAT‑‑ACAATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  2:834486/1‑124 (MQ=255)
                                         aaaaTAAAAAAAAATTAATAATTTTTATAATTTTTATCCTCGTTTTTTTTTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaacta                                                                                      <  1:3235256/128‑5 (MQ=255)
                                           aataaaaTAAAATTAATAATTTTTATAATTTTTATAATAGTGTTATTTTTTTTTATTTGTTTATCTTTAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTaa                                                                                      <  1:2565354/122‑1 (MQ=255)
                                           aaaaaaaaaaaaaTTAATAATTTTTAAAATTTATAACCTCTTTAATTATTTTTTTATTTTTTATTTTTTAAAAAAAAAAAAAAAAAAAACCCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTa                                                                                       <  1:716904/119‑1 (MQ=255)
                                            aataaaTAAAATTAATAATTAATATAATTTATATCATCGTTATATATTTTTTTTTTTTTTTTAATTCAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                  <  2:1120595/123‑1 (MQ=255)
                                                       ataaataatTATTAAAATTTACATACACTTTATAAATATTTTTATTTTTTTATAATAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                       <  2:520378/125‑1 (MQ=255)
                                                            taatTCTTATAATTTAGATTCACTTGATATATTTTTTAATTTGTTAATATTCAAAAAAAAAAAAAAAAAAATCCCC‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                    <  2:307447/128‑1 (MQ=255)
                                                             aatTTTTATAATTTATTTCCTCGTTAATTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                   <  1:2504532/128‑1 (MQ=255)
                                                                       atgttttttatCGTTATTTTTTTTTTTTTTTTTTTTTATTAAAAAATAAAAAAAAAAAAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAGAAAACTAAAAACAAACTCTATTTCTTAAAATTACCta                                                         <  1:281244/118‑1 (MQ=255)
                                                                             atcaactttttttatttttttattttttTATCTTCAAAAATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                    <  2:3169814/116‑1 (MQ=255)
                                                                              tactcttgttatatttttttattttttTATATTAACAAAAAAAAAAAAAAAAAAAACCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:3193475/117‑1 (MQ=255)
                                                                              tCCTCTTTATATATTTTTTTATTTGTTAAGATTAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTGAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:1664044/128‑1 (MQ=255)
                                                                                ctctttttatATTTTTTTTTTTTTTTATATTCAAAAATAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  2:1901750/119‑1 (MQ=255)
                                                                                      tttttttttttttttttttTATTTTTAAAAAAAAAAAAAAAAAAAATCCCTTTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:2861835/123‑1 (MQ=255)
                                                                                         tatttttttattttttTATTATAACAAAAAAAAAAAAAAAAAAAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                          <  2:1595783/128‑1 (MQ=255)
                                                                                          attattTTATATTTTTATTTTAAAAAAAAAAAAAAAAACAATTCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1466944/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTAATATAAAAAAAAAAAAAAAAAAAAT‑‑ACAATAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1302584/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTAAATAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:69777/128‑1 (MQ=255)
                                                                                             tttttATTTTTTTATATTAAAAAATAAAAAAAAATATATCAAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:1931700/128‑1 (MQ=255)
                                                                                               tttATTTTTTTATTATAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:2328571/128‑1 (MQ=255)
                                                                                                 tATTTTTTTATTATTAAAAAAAAAAAAAAAAAAAAACCATTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                               <  2:1179551/128‑1 (MQ=255)
                                                                                                     tttatATCTTCAAAAATAAAAAAAAAAAAAACTCC‑‑ATAAAAATTTAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                           <  2:579669/124‑1 (MQ=255)
                                                                                                        ttATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                        >  2:2935366/1‑128 (MQ=255)
                                                                                                         ttatataaaaaaaaaaaaaaaaaaaaATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:1443208/118‑1 (MQ=255)
                                                                                                          taaaattaaaaaaaaaaaaaaaaaaATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:3021972/119‑1 (MQ=255)
                                                                                                          taaaataaaaaaaaaaaaaaaaaaaATACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:685879/119‑1 (MQ=255)
                                                                                                           attttaacaAATAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:2196048/122‑1 (MQ=255)
                                                                                                           atattaaaaaaTAAAAAAAAAAAAATACACTTTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:458643/120‑1 (MQ=255)
                                                                                                              ataaaaaaaaaaaaaaaaaaaATCCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  2:407791/123‑1 (MQ=255)
                                                                                                                  caAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACAATATTTATTAAAATACCATTTTAAACCACATTTTATTTTTAAAATAAGATATTGAAAAaataaata           >  2:2809729/1‑128 (MQ=255)
                                                                                                                  aaaaaaaaaaaaaaaaaaaACCCA‑‑TAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                <  1:383668/127‑1 (MQ=255)
                                                                                                                   aaaaaaaaaaaaaaaaATCAAATTATAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata               <  2:1732040/128‑1 (MQ=255)
                                                                                                                    aaTAAAAAAAAAACTATAACATTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata             <  2:2360018/128‑1 (MQ=255)
                                                                                                                       aaaaaaaaaaaaaATAACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  2:946410/127‑1 (MQ=255)
                                                                                                                          aaaaaaaaaaATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  2:344983/128‑1 (MQ=255)
                                                                                                                            aaaaaaaaATACACTTTTAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:2536975/128‑1 (MQ=255)
                                                                                                                                aaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAGATTTTTGTTAAAATAACATATTATACAAAATTTAATTTTTAAATAAATATATTAAAAAAATAATTATAAAatata  >  1:2724023/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                  
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: