Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.71.6% 282.4 / inf 297intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (9/64);  new base . (71/113);  total (95/202)
Fisher's exact test for biased strand distribution p-value = 2.38e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.82e-01

Only 100 of 331 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202358‑202612
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 atatAGTGTAAAAAATATTTTTAAGGTTAATTAAAAAACCAT‑AAAATTAAAAATTCTTAAAAAGTAGAACCA‑CGTGATAAATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                                 <  2:848162/125‑1 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CTTGATCTATTTTTTTATATGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCACtaa                                                                                                                                >  2:2630139/1‑126 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACCCCtaaa                                                                                                                               >  1:2725786/1‑125 (MQ=255)
      gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACCtaaaaaa                                                                                                                            >  2:2743476/1‑122 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaa                                                                                                                   >  1:3127113/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATCAAC‑‑TTAAA‑AAATaaaaaaaa                                                                                                               >  2:2602427/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATACT‑CTTGATCTATTTTTTTATATATATATCAT‑CACAAAT‑AAAAAAAAAA‑AAAATCAACTTAAA‑AAATaaaaaaa                                                                                                                >  2:449136/1‑128 (MQ=255)
                 agagTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaa                                                                                                               >  1:2787862/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaa                                                                                                           >  1:2483325/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATACC‑‑AATAAA‑AATTaaaaaaaaaaaaa                                                                                                          >  1:903937/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaa                                                                                                          >  1:2611381/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaa                                                                                                         >  1:1054519/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTATATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAACCAATCCCCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaa                                                                                                        >  1:1764357/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                                         >  1:317625/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTATATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaa                                                                                                         >  1:1179594/1‑128 (MQ=255)
                       taGGTTAATTAAAAATCAATAAAATTTAATAA‑TCTTATAAACTACAACCC‑CGTTATCTATTTTTTTATTTTTTTATCTT‑AAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AA‑AATTaaaaaaaaaaaaaaa                                                                                                        <  2:1855355/127‑1 (MQ=255)
                       aattttaattaaAATAAAAT‑AAAATTAATAATTCTTATAATTTATATCCT‑TTTTATCATTTTTTTTTTTTGTTTATTTT‑CACAAAT‑AAAAAAAAAA‑AATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                       <  1:1951399/124‑1 (MQ=255)
                       aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaa                                                                                                       >  1:3032958/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                        >  2:2800029/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAAT‑AAAAAAAAAAAAAATCACATaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                          >  1:1889445/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCAT‑AAACTTAAT‑ATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                       >  1:2813746/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                       >  1:2929702/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCAT‑AAACTTAATAATTCATATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑AACAAAT‑AAAAAAAAAACAAT‑‑CAAATTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                       >  2:1924852/1‑128 (MQ=255)
                          tttaaataaAAAAAAAT‑AAAATTAAAAATTTTTAAAATTTATATACT‑CTTTTTATATTTTTTTTTTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                                     <  2:2758206/127‑1 (MQ=255)
                          gTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaaa                                                                                                    >  1:3222302/1‑128 (MQ=255)
                           tttattaaAATAAAAA‑AAAATTAATAATTATTATAATTTATATCAT‑CGTGTTTTATTTTTTTATTTTTTTATATT‑AACAAAA‑AAAAAAAAAACAAAACCCTTT‑‑AA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                    <  2:2888397/125‑1 (MQ=255)
                           ttaatttaAAAAACAT‑AAAATTAAAAATTATTATAATTTATATCCT‑CTTTAATTTTTTTTTTATTTTTTTATATTAAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                                     <  2:241237/128‑1 (MQ=255)
                           gttattaaAAAAACAT‑TAAATTAATAAATAATATAATTTATAACCT‑ATTGAAATATTTTTTTATTTTTTTATCAT‑CAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaa                                                                                                    <  2:1462272/125‑1 (MQ=255)
                            taattaaAATAACAT‑AAACTTAATAATTCTTATAATTTATATACT‑AGTTATCTATTTTTTTATTTGTTTATCTT‑AACAAAT‑AAAAAAAAAAAAAT‑‑CAAATTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:527698/1‑128 (MQ=255)
                             aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                                <  2:320236/101‑2 (MQ=255)
                             aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACATTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2681280/1‑128 (MQ=255)
                             aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATAAC‑‑ATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:1504950/1‑128 (MQ=255)
                             aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAA‑AAAATCAACTTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:2572127/1‑128 (MQ=255)
                              attaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCACTTAAAAA‑TTATaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:418402/1‑128 (MQ=255)
                               ttaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:2961128/1‑126 (MQ=255)
                               ttaaAATACCAT‑AAACTTAATAATTCTTATAATCTAGATCAT‑CGAGATCTATATTTTTATTTTTTTATCTT‑CAAAAAT‑AAAAAAAAAACAA‑‑ACAAATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:2723145/1‑126 (MQ=255)
                                taaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATAAC‑‑AATAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:383668/1‑125 (MQ=255)
                                 aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:2636871/1‑124 (MQ=255)
                                 aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:1746793/1‑124 (MQ=255)
                                 aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCAATTTTTTTATTAGATTATCTT‑CACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:206241/1‑124 (MQ=255)
                                  aaaaataaaaaaaaTTAATAATTATTATAATTTATATAAA‑ATTTATAAATTTTTTTATTTTTTTAACAT‑AAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                             <  2:961785/118‑1 (MQ=255)
                                   aaaaaaaaaaaaaTTAATAATTTTTAAAATTTATAACCT‑CTTTAATTATTTTTTTATTTTTTATTTTT‑TAAAAAA‑AAAAAAAAAAAAAACCCATTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTa                                                                                               <  1:716904/119‑1 (MQ=255)
                                   aaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑Taaaaa                                                                                           >  1:1747534/1‑128 (MQ=255)
                                    aataaaT‑AAAATTAATAATTAATATAATTTATATCAT‑CGTTATATATTTTTTTTTTTTTTTTAATT‑CAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                          <  2:1120595/123‑1 (MQ=255)
                                    aaaaacaaaaaCTTAATAAATATTAAAATTTACAACCA‑CGTTATCAATTTTTTTAATTTTTTAACAT‑AAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                            <  2:3058508/120‑1 (MQ=255)
                                     tACCAA‑AAAAATAAAAATTTTTATAAATTATTACCT‑CTTTATATATTTTTTTATTTTTTTATATT‑CAAAAAT‑AAAAAAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                           <  2:2695730/128‑1 (MQ=255)
                                     aaaaaaaaaaaTTAATAAATCTTATAATTTATATCCT‑AGTTTTTTATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  2:30341/121‑1 (MQ=255)
                                        cAT‑AAAATTAATAATATTTATAATTTTTATCATACGT‑ATTTTTTTTTTTATTTTTTTTAATA‑TAAAAAT‑TAAAAAAAAAAAAACCCCATAAAAA‑TTTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  2:2149530/128‑1 (MQ=255)
                                             aaattAAAAATTTTTATAATTTATATACT‑CGTTATCTATTTTTTTATTTTTTTATCTT‑AACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:687772/125‑1 (MQ=255)
                                              aattAAAAATTCTTATAATTTCTCACCC‑CCCGATCTATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:1436751/126‑1 (MQ=255)
                                                    taatTATTATAATTTATAAACA‑CGTTATCTATTTTTTTATTTTTTTATATT‑CAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                           <  2:3285272/128‑1 (MQ=255)
                                                     aatTTTTATAATTTATTTCCT‑CGTTAATTATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                           <  1:2504532/128‑1 (MQ=255)
                                                              aatttttataat‑CGTGTTATATTTTTTTTATTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                  <  2:3250725/117‑1 (MQ=255)
                                                                  gttgagactagTGATTTATTTTTTTATTTGTTTAAATT‑CAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                              <  1:2554027/118‑1 (MQ=255)
                                                                    tttacT‑CGTTATATTTTTTTTTTTTTTTTTAAATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                             <  2:1800133/124‑1 (MQ=255)
                                                                     aatacttttGATATATTTTTTTTATTTTTTAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACCCATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                             <  2:1664829/120‑1 (MQ=255)
                                                                       acctgtttaattattttatttTTTTTTTTAATT‑AAAAAAA‑AAAAAAAAAAAAATCCAATT‑‑‑AA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:1991824/117‑1 (MQ=255)
                                                                        tcttgttttatATTTTTTTTTTTTTTTTTATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:289983/118‑1 (MQ=255)
                                                                        attcttttttttttttttttttttttTATTTT‑AAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:3073524/116‑1 (MQ=255)
                                                                         ctctttttatATTTTTTTTTTTTTTTATATT‑CAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:1901750/119‑1 (MQ=255)
                                                                          acgttaaaaaTTTTTTTATTT‑TTTAAATT‑AAAAAAA‑AAAAAAAAAAAAAAACCAAT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:2451754/119‑1 (MQ=255)
                                                                           ttttttttatttttttattttttTATATT‑AAAAAAA‑AAAAAAAAAAAAAATACC‑CTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                       <  2:776641/121‑1 (MQ=255)
                                                                           agtttaatATTTTTTTATATTTTTAAAAT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:940885/121‑1 (MQ=255)
                                                                            ttttttatttttttttttttttTAT‑TT‑TAAAAAT‑AAAAAAAAAAAAATTCC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:324622/120‑1 (MQ=255)
                                                                            gtgttcattttttttatttttttaTATT‑AAAAAAA‑AAAAAAAAAACAAAACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:518233/120‑1 (MQ=255)
                                                                            gtgaattatttattTAATTTTTTATATT‑AAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:2220713/122‑1 (MQ=255)
                                                                             tatttattttttttattt‑tttttatT‑AAAAAAA‑AAAAAAAAAAAAATACAC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:1782113/121‑1 (MQ=255)
                                                                               tttttttttttttttttttTATTTT‑TAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                   <  1:2861835/123‑1 (MQ=255)
                                                                                  tatttttttattttttTATTAT‑AACAAAA‑AAAAAAAAAAAAAAAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  2:1595783/128‑1 (MQ=255)
                                                                                  aaTTTTTTTAATTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:34613/127‑1 (MQ=255)
                                                                                   ttttttttATTT‑TTTATATT‑TAAAAAT‑AAAAAAAAAAAAATACCCTTT‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:1471266/127‑1 (MQ=255)
                                                                                   aTTTTTTTATTTGTTTATTTT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  1:2880068/128‑1 (MQ=255)
                                                                                    ttttttttttttttttTAAT‑AAAAAAA‑AAAAAAAAAAAAATCCC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:704445/128‑1 (MQ=255)
                                                                                    tttttttatttttttaTATT‑CACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:2525480/128‑1 (MQ=255)
                                                                                    tttttttatttttttaATTT‑AAAAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:1267767/128‑1 (MQ=255)
                                                                                    tttttttAATTTTTTATTTT‑TA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                         <  1:25313/128‑1 (MQ=255)
                                                                                    attttttttttttttATTTTATAAAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  1:343485/127‑1 (MQ=255)
                                                                                     ttttttttttttttttttT‑CAAAAAA‑AAAAAAAAAAAAAAAAAC‑ATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:754908/128‑1 (MQ=255)
                                                                                     ttttttATTTTTTTAATAT‑AAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATAAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:1302584/128‑1 (MQ=255)
                                                                                     ttttttATTTTTTTA‑AAT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:69777/128‑1 (MQ=255)
                                                                                      tttttATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAATAAAAAAAAAACATAAAAACAAAAAATATTTATTAAAAATACATATAATACAACatttttattaata                                           >  1:399265/1‑120 (MQ=255)
                                                                                       ttttttttGTTTATCTT‑AAAAAAT‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:1180043/128‑1 (MQ=255)
                                                                                       ttttATTTTTTTTTTTT‑AAAAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                         <  1:2743476/128‑1 (MQ=255)
                                                                                       ttttATTTTTTTTTATT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:502882/128‑1 (MQ=255)
                                                                                        tttATTTTTTTTTTTT‑AAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  1:309779/128‑1 (MQ=255)
                                                                                        tttATTTTTTTATTAT‑AAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  2:2328571/128‑1 (MQ=255)
                                                                                        tttATTTTTTTATTAT‑AAAAAAA‑AAAAAAAAAAAAAAAAAC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:3175445/128‑1 (MQ=255)
                                                                                         tttttttttTATCAT‑AACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                        <  2:2978128/125‑1 (MQ=255)
                                                                                           tttttttTATTTT‑AAAAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAA‑AATTATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  2:2033534/127‑1 (MQ=255)
                                                                                            ttttttTATATT‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  2:2860364/128‑1 (MQ=255)
                                                                                               gTTTATATT‑AAAAAAA‑AAAAAAAAAAAAAATCCCCTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:1715456/128‑1 (MQ=255)
                                                                                                 ttaaaattaaaaaaa‑aaaaaaaaaaaaaaACCCTT‑‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:3153198/117‑1 (MQ=255)
                                                                                                 ttATCTT‑CACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAA‑AAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                                >  2:2935366/1‑128 (MQ=255)
                                                                                                    ataataaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  2:227071/120‑1 (MQ=255)
                                                                                                      atataaaaaa‑aaaaaaaaaaaaaaaaCCCATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:1397449/122‑1 (MQ=255)
                                                                                                       ttaaaaaaT‑AAAAAAAAAAAAATCCACTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  2:585775/123‑1 (MQ=255)
                                                                                                        taaaaaaa‑aaaaaaaaaaATAAACCCTTTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:1054519/124‑1 (MQ=255)
                                                                                                             aaT‑AAAAAAAAAACTATAACATTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                     <  2:2360018/128‑1 (MQ=255)
                                                                                                                   aataaaaaaaaACTCCTCTTTAC‑AATTTAAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTGTTAAAATAAGATATTGACATAatatatat                  <  2:650074/125‑1 (MQ=255)
                                                                                                                    aaaaaaaCAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACAAAATTTAAAAAAATAACATTTTAAAAAAATTTTAATTTTTAAATAAAAATATTTATATAatatataaata               >  1:2181414/1‑124 (MQ=255)
                                                                                                                                   |                                                                                                                                
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202358‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑