Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9460CA32.3% 1359.9 / 129.8 841intergenic (+330/+128)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (253/299);  new base A (205/58);  total (466/375)
Fisher's exact test for biased strand distribution p-value = 1.42e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 853 total aligned reads displayed.

TAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203819‑204073
                                                                                                                                    |                                                                                                                               
     aaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTGAAAAAATAAAAGTAAGATTTTGATAAACCAATACTatat                                                                                                                            >  1:1542099/1‑128 (MQ=255)
         ctagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTGTTTTTGTTTTTTTTTTAAAATAAAAGATATTTTTGGATAAGCCAAATTTATTTCaaa                                                                                                                        >  2:570829/9‑128 (MQ=255)
          tagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTGGATCAACCAAAAATATAaaaaaa                                                                                                                       >  1:1134909/8‑128 (MQ=255)
          tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTTGATCAACCAAAACTATATGaaaa                                                                                                                       >  2:2915652/1‑128 (MQ=255)
            tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGACAAACAAAAACTATTTaaaaaa                                                                                                                      >  2:1563971/1‑128 (MQ=255)
             gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTT‑TAAAAAAAAAATTAATATTTTGATAAACCAAAACTATATAAAAAAAAt                                                                                                                   >  2:2850167/1‑128 (MQ=255)
              ttttttgCTTTTTTTTATTATTATCATCATTAAAACTTTTTAAAATTGTTTTTTTTT‑GGTTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaaaa                                                                                                                    <  1:846840/122‑1 (MQ=255)
              ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTGGGACAACCACAACTATAaaaaaaaa                                                                                                                     >  2:3248816/1‑128 (MQ=255)
              ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAATAGATTTTGTTAAACCAAAACTAAATaaaaaaaa                                                                                                                    >  1:371451/1‑128 (MQ=255)
                cTAGGCTTTTTATTATACTTATCAACATTTCAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTTATAAACAAAAAAT‑TATAaaaaaatatt                                                                                                                 >  2:1619568/1‑124 (MQ=255)
                 tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGGTTCAACCAAAAAATTATAAAAAAAAttta                                                                                                                >  1:96912/1‑126 (MQ=255)
                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAATAAAATTTGGATAAACCAAAAATATATAAAAAAAAtt                                                                                                                  >  2:2739675/1‑128 (MQ=255)
                    tcTTTTTTTTATAAATATAAAAATTAAAACTTTTTAAAATTTTATTTTTTATGT‑TTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                              <  1:2519504/127‑1 (MQ=255)
                     cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATAATATTTTTTTCAACAAAAAATAAAAAAAAAAAAATaaaaa                                                                                                             >  2:2680349/1‑128 (MQ=255)
                      tttttATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGAACAACCAAAAATATAACAAAAAAATTaaaaaa                                                                                                            >  2:2999038/1‑128 (MQ=255)
                       ttttATTATATTTTTAAAAATTTAAAAGCTTTAAATTTTTATTTTTTA‑TG‑TTTGTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                            <  2:2578301/128‑1 (MQ=255)
                       ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATAATTGTAAAAACCAAAAAATTTTAAAAAAAAATaaaaaaaa                                                                                                          >  2:801735/1‑128 (MQ=255)
                        tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGAAAAACCAAAAATTTTAAAAAAAAATTaaaaaaaa                                                                                                          >  2:1776149/1‑128 (MQ=255)
                        tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAATAATATTTTGTAAACCCAAAAATATATGAAAAAAATTaaaaaaaa                                                                                                          >  1:262130/1‑128 (MQ=255)
                         ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATAATATTTGTATAAACAAAAACTATATCAAAAAAATAaaaaaaaaaa                                                                                                        >  1:3055857/1‑126 (MQ=255)
                         ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTAAAAAAATAAAAGAAAAAATTTGATCAACCAAAACAAAAAAAAAAAAATAaaaaaaaaaa                                                                                                        >  1:2350433/1‑126 (MQ=255)
                             tataATTTTAAAAATTAAACCGTTTTAAAATTTTTTTTTTTT‑GG‑TTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagttt                                                                                                    <  1:3301610/128‑1 (MQ=255)
                              ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTGATAAAACAAAAATATATAAAAAAAATTAAAAAAAAaatttt                                                                                                    >  2:3231467/1‑128 (MQ=255)
                                  ttttaaaaaTTACCACGCTTTAAAAGTGTATTTTTTA‑GG‑TTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                                                                                <  1:2571626/120‑1 (MQ=255)
                                  ttATCAACATTATAAAGATTTAAAAGTGTATTTTTTA‑G‑‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGTATAAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                                                                             <  2:1145506/128‑1 (MQ=255)
                                  ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGTATAAAAAAAAAATATATAAAAAAAATTTATAAAAAtatttttttt                                                                                                >  1:1234384/1‑124 (MQ=255)
                                   tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGTT‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATAAAAATTTGGATAAAACAAAAAAATAAAAAAAAAATAAAAAAATAtatttataaa                                                                                                >  1:282089/1‑123 (MQ=255)
                                          aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGGTTCAACCAAAACAATAAAAAAAAAATTAAAAAAAATATTTTAATTTTGtttaa                                                                                        >  1:2689913/1‑126 (MQ=255)
                                            tACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAATATTTGGATAAAACAAAAATATTTAAAAAAAATTAAAAAAAAtattttatttaatttaaa                                                                                        >  2:2534736/1‑120 (MQ=255)
                                            tACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAATAATATTTGGATCAAACAAAAATATATCAAAAAAATTAAAAAAAAAATTTTAGTTTAATTTaaaa                                                                                      >  2:104076/1‑128 (MQ=255)
                                                aCGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATAAACCAAAAATATTTAAAAAAAATTAAAAAAAAAATTTTATTTTAGTTTaaaaaatg                                                                                  >  1:1906782/1‑124 (MQ=255)
                                                aCGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGGATAAACCAAAAATATATCAAAAAAATTAAAAAAAATATTTTATTTTTTTTTCaaaaatg                                                                                  >  2:169374/1‑124 (MQ=255)
                                                aCGCTTTCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATAATATTTGTATAAAAAAAAAAATTATAAAAAAAATTAAAAAAAATATATTATTTAAATTTAAAATATg                                                                                  >  2:2355530/1‑128 (MQ=255)
                                                    tttCAAAGTGTATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGGATCAACCAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTCAAATATGCata                                                                              >  2:515180/1‑128 (MQ=255)
                                                     ttCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTGTAAAAATAAAATTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATCTGCataatta                                                                          >  2:2963299/1‑124 (MQ=255)
                                                            tgtATTTTTTA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAAAATAATCAAAAAAATTAAAAAAAATAGGTTTGTTGATTTTAAAATCTGCaaaattaattc                                                                      >  1:2183428/1‑118 (MQ=255)
                                                               tttttttT‑GG‑CTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAg                                                                  <  1:718779/127‑1 (MQ=255)
                                                                 tttttA‑GG‑CTTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAATTTAGTTTAAAATATGAAAATATATTAaaaatg                                                                 >  2:2462520/1‑126 (MQ=255)
                                                                  ttttA‑GG‑CTTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGATCAACCAAAAATTTTTAAAAAAAATTAAAAAAAATTGTTTTTTTTATTTAAAAATATGAAAATATAGTAaaaatg                                                                 >  2:378890/1‑126 (MQ=255)
                                                                      a‑GG‑CTTG‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATAAACAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTTGTTTAGTTTAAAAAATGAATATATAGTACAAAGTAATTTAt                                                          >  2:1197800/1‑128 (MQ=255)
                                                                          ttttttttttttttttttttttttGTAATAATAATAGTAAGATTTGGATCAAATAAAACTATATCAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                            <  1:2291607/120‑1 (MQ=255)
                                                                          ttttttttttttttttttttttttGTAAAAATATAAGTAAGATTTGTATAAAACAAAACTATATATAAAAAATTTAAATATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                            <  2:2089620/120‑1 (MQ=255)
                                                                          ttttttttttttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                            <  1:31529/120‑1 (MQ=255)
                                                                            ttttttttttttttttttttttttAAAATTTAAAGTAAGATTTGTATCAACCAAAACTATATCTAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                          <  2:854466/122‑1 (MQ=255)
                                                                            ttttttttttttttttttttttGTAAAAATAAAAGTTAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                          <  2:922481/122‑1 (MQ=255)
                                                                              ttgtttttttttttttttttGTAAAAATAAAATTAAATTTTTGATAAAAAAAAAAAAAATAAAAAAAATTAAAAAAAATTTTTTATTTTTTTTTCAAATGATAATATATATTAAAAAAAAAttatata                                                        >  2:722088/5‑123 (MQ=255)
                                                                                gtttttttttttttttttttAAAAATAAAATTAATATTTTGAAAAACCAAAAATATTTAAAAAAAATTAAAAAAAAAATTTTTTTTTATTTTAAAAAATAGATATATATAACAAAATAATTTaatata                                                      >  2:1829813/3‑123 (MQ=255)
                                                                                gtttttttttttttttttttAAAAATAAAATTAAAATTTGGATAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATTTTTTATTTGTTTTTCAAAAATGCAAAAATAGTAAAAAGGAAATTAtttat                                                      >  1:3268625/3‑124 (MQ=255)
                                                                                    ttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACAAAAAATATTTAAAAAAAATTAAAAAAAATAGTTTAGTTTTGTTTCAAATATGATTATATATTAAAAAGGAATTTATGATATaaa                                                  >  2:32838/1‑128 (MQ=255)
                                                                                      ttttttttttttGTTTAAATTTAAGTAAGATTTGGATCAACCAAAACTATATCAAAATAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGTTAGataaa                                                <  1:2772298/128‑1 (MQ=255)
                                                                                      ttttttttttttGTAAAAATTAATGTAAGATTTGTATCAACAAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaaat                                                <  1:301108/128‑2 (MQ=255)
                                                                                            ttttttttAAAAATATAAGTAAGATTTGTATAAAAATAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                          <  1:106463/128‑1 (MQ=255)
                                                                                              ttttGTAAAAATAAAAGTAAGATTTGGATATATAAAAAATATATCAAATAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                        <  2:3087036/128‑1 (MQ=255)
                                                                                               tttGTAAAAATAAAATTTATATTTTTATAAATAAAAAATATATTAAAAAAATTAAAAAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                       <  1:1437367/128‑1 (MQ=255)
                                                                                               tttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                       <  1:784388/128‑1 (MQ=255)
                                                                                               tttGTAAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                       <  1:1883169/128‑1 (MQ=255)
                                                                                                ttGTATATATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                      <  2:3323638/128‑1 (MQ=255)
                                                                                                ttGTAATAATAAAAGTATGTTTTGGATCATCCAAAACTATATAAATAAATTTAATATAAATAGTTTAGTTGAGTTTGAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                      <  2:165252/128‑1 (MQ=255)
                                                                                                ttGTAAATATAATTGTAAGATTTTGATCAACCAAAACTATATCAAATAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                      <  1:201058/128‑1 (MQ=255)
                                                                                                ttGTAAAAATAAAAGTATGTTTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                      <  1:2084013/128‑2 (MQ=255)
                                                                                                 tGTAAAAATAAAAGTAAGATTTGGATCAATCAAAACTTTATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatc                                     <  2:172350/128‑3 (MQ=255)
                                                                                                     ataaTAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                                 <  1:645259/126‑7 (MQ=255)
                                                                                                     aaaaTAATATTAAGATTTGGATAAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                 <  2:271029/128‑1 (MQ=255)
                                                                                                     aaaaTAAAAGTATGATTTTTATAAACCAATACTATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                 <  2:1489093/128‑1 (MQ=255)
                                                                                                      taaTAAAAGTAATATTTTTATAAAAAAAAAATATATAAATATAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAATatcaacta                                <  2:1281564/127‑8 (MQ=255)
                                                                                                      aaaTAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATa                                <  1:3202290/128‑1 (MQ=255)
                                                                                                       aataatAGTTAGATTTTGATCAATCATAATTATATCAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                               <  1:3102014/128‑1 (MQ=255)
                                                                                                        atatAAGTAATATTTTGATCAAAGAAAACTATATCAAATAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaat                              <  1:809765/128‑10 (MQ=255)
                                                                                                         tAATAGTAAGATTTGGATCAACAAAAACTATATAAAAAAAATTAAAAAAATTAGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaatc                             <  2:2149637/128‑11 (MQ=255)
                                                                                                         tAAAAGTAAGATTTGGATCAACCAAAAATATATCTAAAAAATTAAAAAAAATAGTTTAGTCGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                             <  1:297440/128‑1 (MQ=255)
                                                                                                          aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                          >  1:508321/1‑114 (MQ=255)
                                                                                                           taaGTAAGATTTGTATCAACCAAAACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                           <  2:2789407/127‑1 (MQ=255)
                                                                                                            taGTAAGATTTGGATCAAACAAAACTATATCAAAATAATTAAATAAAATAGTTTAGTTGAGTTTCAATTCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                          <  2:1086025/127‑1 (MQ=255)
                                                                                                            atttAAGTTTTGGATCAAAGAAAACTATATCAAAAATATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCAt                          <  2:3026449/125‑1 (MQ=255)
                                                                                                            aaGTAAGATTTGTATCAAACAAAAATTTATAAATAAAATTAAAAAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                          <  1:1378103/128‑1 (MQ=255)
                                                                                                            aaGTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                          <  2:400766/128‑1 (MQ=255)
                                                                                                               tattaTTTTGATCAATAAAAAATATATCAAAAAAATTAAAATAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                       <  1:167250/124‑1 (MQ=255)
                                                                                                                aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                      >  2:1991513/1‑128 (MQ=255)
                                                                                                                 aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                     >  1:10948/1‑128 (MQ=255)
                                                                                                                 aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                     >  2:468656/1‑128 (MQ=255)
                                                                                                                  gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                    >  2:3149515/1‑128 (MQ=255)
                                                                                                                  gATTTGGATCAAACAATAATATATCTAATAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                    <  2:2243124/128‑1 (MQ=255)
                                                                                                                    tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATATTTTAAt                  >  1:2461277/1‑128 (MQ=255)
                                                                                                                    tttGGATAAAACATAATTATATAAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                  <  1:1816790/128‑1 (MQ=255)
                                                                                                                    ttaggATCAAACAAAACCATATCAAAAAAATTAAAAAAAATAGTTTATTTGAGTTACAAATCTGCATATATAGTACATAGGAATTTATAATAGAAAAAAATGTATAAGTTGATAATCAATTTATTAAt                  >  1:2954089/4‑128 (MQ=255)
                                                                                                                     ttGGATCAACCAAAACTATATCAAAAAATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAGGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                 >  2:1908470/1‑128 (MQ=255)
                                                                                                                      tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                >  1:1186868/1‑128 (MQ=255)
                                                                                                                      tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                >  2:2515292/1‑128 (MQ=255)
                                                                                                                        tttttaagttatcTATATAAATAATATTATATATAATAGTTTTTTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg              <  1:888922/116‑1 (MQ=255)
                                                                                                                        gATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttttcta                 <  2:138091/125‑5 (MQ=255)
                                                                                                                        gATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg              <  1:2739578/128‑1 (MQ=255)
                                                                                                                           caaacaaaACTATATCATAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt           <  2:3206399/128‑1 (MQ=255)
                                                                                                                             aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  1:1705097/1‑128 (MQ=255)
                                                                                                                             aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  2:2610464/1‑128 (MQ=255)
                                                                                                                             aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  1:29091/1‑128 (MQ=255)
                                                                                                                             aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATATTTTAATTTTGTttat         >  2:650641/1‑128 (MQ=255)
                                                                                                                              ccAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt        >  1:1600108/1‑128 (MQ=255)
                                                                                                                                aaaaCTATATCAATAATATTAAAAAAAATAGTTTAGTTGAGTTGCAAATCTGCATATATAGTACAAAGGAATTTATGATAGATAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa      <  1:2646801/128‑1 (MQ=255)
                                                                                                                                 aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa     >  1:1004183/1‑128 (MQ=255)
                                                                                                                                  aaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaaa    >  1:1737140/1‑127 (MQ=255)
                                                                                                                                    |                                                                                                                               
TAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑CTTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203819‑204073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑