BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,163	2 bp→TT	intergenic (‑446/+396)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,163	0	A	T	99.7%	3848.6 / NA	1228	intergenic (‑446/+397)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (1/3); new base T (626/597); total (627/601)
Fisher's exact test for biased strand distribution p-value = 3.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,164	0	A	T	99.1%	3383.0 / NA	1217	intergenic (‑447/+396)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (2/9); new base T (621/585); total (623/594)
Fisher's exact test for biased strand distribution p-value = 3.39e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1228 total aligned reads displayed.

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACG  >  CP016816/420041‑420279

||

cattcatACTTTTAGTCTCATAAATCTAAGTTTCTTAAATTATTTTATCATTTAAATAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATa                                                                                                                    <  2:2135374/128‑1 (MQ=255)

 attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTtaataa                                                                                                                   <  2:1491019/128‑1 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                  <  1:1182508/128‑1 (MQ=255)

    catACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTg                                                                                                                >  1:3226623/1‑128 (MQ=255)

     atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                               <  1:2393097/128‑1 (MQ=255)

      tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGaa                                                                                                              <  1:2871519/128‑1 (MQ=255)

      tACTTTTAGTATCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAATAAAATAATAATTTTATTAGTTTATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGaa                                                                                                              <  2:646579/128‑1 (MQ=255)

       aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAat                                                                                                             >  2:2962399/1‑128 (MQ=255)

       aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAat                                                                                                             >  2:2013729/1‑128 (MQ=255)

       aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAat                                                                                                             >  1:830051/1‑128 (MQ=255)

        cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                            >  1:2723580/1‑128 (MQ=255)

        cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                            <  1:2208340/128‑1 (MQ=255)

           ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                         <  1:1597440/128‑1 (MQ=255)

               tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                     >  1:2511078/1‑128 (MQ=255)

                  cATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaaa                                                                                                  <  1:492600/128‑1 (MQ=255)

                    tAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                <  2:932878/128‑1 (MQ=255)

                    tAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                >  2:3302985/1‑128 (MQ=255)

                      aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATCACTATTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAAtttt                                                                                              >  2:1164010/1‑126 (MQ=255)

                      aaTCTAAGTTTCTAAAATTATTTTATCAATTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                              <  2:143519/128‑1 (MQ=255)

                       aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTATTCAAATTCtt                                                                                             >  2:1295336/1‑128 (MQ=255)

                          tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                          <  2:2709287/128‑1 (MQ=255)

                           aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                         <  2:3255210/128‑1 (MQ=255)

                             gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                       >  1:915147/1‑128 (MQ=255)

                             gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                       >  1:647445/1‑128 (MQ=255)

                             gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAaata                                                                                       >  1:760743/1‑128 (MQ=255)

                               ttCTAAAATTATTTTATAATTTAAAAAAATAATAATTTTATTATTTGATATTTTAGAAAAATAGTAGAAATTTTTTAAAAATTTTTTAATTTTAATAAATGATTTATTTTAAAAATTGTAAAataatt                                                                                     >  1:1039647/1‑128 (MQ=255)

                                 cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                   <  2:2034684/128‑1 (MQ=255)

                                 cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTATTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                   >  2:462467/1‑128 (MQ=255)

                                  tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                  >  2:2887686/1‑128 (MQ=255)

                                   aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                         >  2:2263684/1‑104 (MQ=255)

                                   aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                 <  1:979172/128‑1 (MQ=255)

                                       ttattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATc                                                                             <  2:1915306/128‑1 (MQ=255)

                                        tattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCa                                                                            <  1:1335075/128‑1 (MQ=255)

                                        tattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCa                                                                            <  2:2835258/128‑1 (MQ=255)

                                          ttttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAtt                                                                          >  1:3151477/1‑128 (MQ=255)

                                            ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                        <  2:497611/128‑1 (MQ=255)

                                             tataATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGAACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTAAAATTGTTAAATTATTTTCAAATCATTATc                                                                       <  2:1954644/128‑1 (MQ=255)

                                             tATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                       >  2:1666645/1‑128 (MQ=255)

                                             tATCATTTAAAAAAATAATAATTTTATTAGTTGATATATTAGAAAACTACTAGCAATTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                       <  2:598903/128‑1 (MQ=255)

                                              aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                      <  2:1539651/128‑1 (MQ=255)

                                              aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                      <  1:2466421/128‑1 (MQ=255)

                                              aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                      <  2:172686/128‑1 (MQ=255)

                                               tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                     <  1:1100360/128‑1 (MQ=255)

                                               tCAATTAAAAAAATAATACTTTTATTAGTTTATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                     <  1:1272967/128‑1 (MQ=255)

                                                cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAt                                                                    <  1:1993546/128‑1 (MQ=255)

                                                 aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                   >  1:1894254/1‑128 (MQ=255)

                                                  tttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                  >  2:1804014/1‑128 (MQ=255)

                                                  tttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                  >  1:2838234/1‑128 (MQ=255)

                                                  tttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                  >  1:2036409/1‑128 (MQ=255)

                                                   ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttttt                                                                                                      <  1:3311188/91‑1 (MQ=255)

                                                       aaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCaa                                                             <  1:58972/128‑1 (MQ=255)

                                                          aataatACTTTTTTTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                          <  1:2131266/128‑1 (MQ=255)

                                                          aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                          <  2:3078917/128‑1 (MQ=255)

                                                               taCTTTTATTAGTTGATATATTAGAATACAACTTGCACTTTTTTAAAAAATTTTTAATTTTAATTACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑Gc                                                    <  1:1441858/128‑1 (MQ=255)

                                                               taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAttc                                                     >  2:1345970/1‑126 (MQ=255)

                                                               taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑Gc                                                    >  2:89669/1‑128 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑tctct                                                 >  1:2320227/1‑127 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑TCTCg                                                 >  1:2602898/1‑128 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCg                                                 >  2:3116593/1‑128 (MQ=255)

                                                                   tttaattttttatatatTATTAAAATACTAGCACTTTTTTAAAAAATTTTTAATTTTAAAAAATTAATTATTTTTAAAATTGTTAAAATATTTTCAAATAATTATCTATTAATCAATTTTAT‑GCTCG‑t                                               <  1:2657867/117‑1 (MQ=255)

                                                                   tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCGTTATCTATTAATCAATTTTAT‑TCTCG‑t                                               >  2:768590/1‑128 (MQ=255)

                                                                   tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑t                                               >  2:2769449/1‑128 (MQ=255)

                                                                     tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑ttt                                             >  1:1800296/1‑128 (MQ=255)

                                                                     tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑ttt                                             >  1:2954268/1‑128 (MQ=255)

                                                                      attatttttaatatTATAAAACTACAATCAATTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATATATTAAACAATTTTAT‑GCTCG‑tttt                                            <  2:687505/118‑1 (MQ=255)

                                                                      attaGTTTATATATTAGAAAACTACTATCAATTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑tttt                                            <  2:3175815/128‑1 (MQ=255)

                                                                         attttatatatTATAAAAATAATATAAATTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATATTTTAATCAATTTTAT‑GCTCG‑ttttttt                                         <  1:100121/123‑1 (MQ=255)

                                                                         aGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑ttttttt                                         >  2:2482384/1‑128 (MQ=255)

                                                                             tatatatTATTAAACTACTAGCACTTTTTTTAAAAATTTTTAATTTTTATAACTGAATTATTTTTCAAATTTTTAAATTTTTTTCAAATCATTATATTTTAATAAATTTTAT‑GCTCG‑ttttttttttt                                     <  1:370254/127‑1 (MQ=255)

                                                                              atatatTATATAAATAATATCAATATTTTAAAAAAATTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTAAAATCATTATCTATTAATCAAATTTAT‑GCTCG‑tttttttttttt                                    <  2:23522/128‑1 (MQ=255)

                                                                                atatTAGAAAACTACTATCAATTTTTTAAAAAATTTTTAAATATAAAAACTGAATTATTTTTCAAAATTTTAAATTATTTTAAAATCATAAACAAATAATCAATTTTAT‑GCGCG‑tttttttttttttt                                  <  2:3202474/128‑1 (MQ=255)

                                                                                atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑tttttttttttttt                                  >  2:843216/1‑128 (MQ=255)

                                                                                 tatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑TCTCG‑ttttttttttttttt                                 >  2:819090/1‑128 (MQ=255)

                                                                                      gAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTTATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑tttttttttttttttacaaa                            <  1:2558289/128‑6 (MQ=255)

                                                                                        aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑ttttttttttttttttttaaaa                          >  2:341472/1‑123 (MQ=255)

                                                                                         aaCTACAAGCAATTTTTTAAAAAATTTTTAATTTTATTAAATGAATTATTTTTAAAATTGTTAAATTATTTTAAAATCATTATCAATTAATCAATTTTAT‑GCTCGTTTTTTTTTTTTTTTTTT‑ACaaa                         <  2:393755/128‑1 (MQ=255)

                                                                                          aataaattcatttttttAAAAAATTTTTAATTTTAATAAATTTATTTTTTTTAAAATTTTTAAATTATTTTCAAATAATTATATATTAATAAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACaaaaa                       <  2:2639803/117‑1 (MQ=255)

                                                                                           taaaattaaattttttAAAATATTTTTAATTTTAATATTTTATTTATTTTTAAATTTTTTAAATATTTTTAAAATTTTTATTTTTTATTAAATTTTTT‑TTTTT‑TTTTTTTTTTTTTTTTT‑ACAAAAat                      <  1:1383278/118‑1 (MQ=255)

                                                                                            tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑TCTC‑‑TTTTTTTTTTTTTTATT‑AAAAAAaaat                    >  2:2203174/1‑128 (MQ=255)

                                                                                             actatctatttattAAAAAAATTATAATT‑TTATAACTGTATTTTTTTTTCATTTGTTTAAATATTTTTAAAATATTATTAATTTATAAATTTTATGGGTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAAtata                   <  2:1860016/120‑1 (MQ=255)

                                                                                             aatatcaattttttAAAAAATTTTTAATTTTTATAAATTAATTATTTTTTAAATTTTTAAAATATTTTAAAATAATTATATATTAATAAATTTTTT‑TTTAGTTTTTTTTTTTTTTTTTT‑ACAAAAata                     <  1:1665343/120‑1 (MQ=255)

                                                                                              ttttattttttttAAAATATTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTTAATTATTTTAAAATAATTATATATTAATAAATTTTAT‑TCTAG‑TTTTTTTTTTTTTTTTT‑ACAAAAAtata                   <  2:137933/121‑1 (MQ=255)

                                                                                               taGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑‑TTTTTTTTTTTTTTTT‑ACaaaaaaaaatt                 >  1:3085668/1‑122 (MQ=255)

                                                                                                   aattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTAT‑TCTCT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAattta              <  2:1606431/126‑1 (MQ=255)

                                                                                                   aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑Aaaaaaaataaaatta              >  1:3187888/1‑119 (MQ=255)

                                                                                                   aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATAAAattta              >  1:443193/1‑128 (MQ=255)

                                                                                                   aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAattta              >  1:1527875/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCT‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATAatttatt            >  2:1209144/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatttatt            >  2:1063925/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAatttattt           >  1:708169/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAATTT‑TTATTTTAATAAATTTATTATTTTTCAAATTTTTTAAATATTTTAAAATAATTTTCTATTAATCAATTTTAT‑GCTCG‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGa         <  2:2535166/128‑1 (MQ=255)

                                                                                                      tttttAAAAAATTTTTTATTTTAAAAACTTTTTTTATTTTAAAATTTATTAATTATTTTCAAATCATTATCTTTTAATCAATTTTAT‑TCTCG‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGa         <  2:3018610/128‑1 (MQ=255)

                                                                                                         ttAAAAATTTTTAATTTTTAATAA‑TTAATTTTTTTTTAAAATTTTAAATTTTTTTAAAATAAATTTATATTAATAAATTTTTT‑GGTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGAtt       <  1:3270068/128‑1 (MQ=255)

                                                                                                         ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATttattttatt       >  1:2817562/1‑128 (MQ=255)

                                                                                                          ttaaaaaTTTTTAATTTTTATAAATTAAATATTTTTAAAATTTTTTAATTATTTTCAAATAATTATAAATTTATAAATTTTTT‑TCTAG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGAtt       <  2:1110309/126‑1 (MQ=255)

                                                                                                          tAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTTAATTTTTTTAAAATAATTATATATTAATAAATTTTAT‑TTTTT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGAtt       <  2:2412596/128‑1 (MQ=255)

                                                                                                             aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTTAAAAAAAATAAAATTTATTTAAATaa     >  2:2089724/1‑128 (MQ=255)

                                                                                                             aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTATTTTTATTaaa    >  1:3002392/1‑128 (MQ=255)

                                                                                                              aaaTTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATTATTTATTTAATTAAAc   >  1:1714293/1‑128 (MQ=255)

                                                                                                               aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTaaaaa  >  2:2314099/1‑126 (MQ=255)

||

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACG  >  CP016816/420041‑420279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`