New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 165253 =971 (0.850)166 (0.170) 67/220 13.6 16.9% intergenic (+217/‑325) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
?CP016816 = 165249 783 (0.790)intergenic (+213/‑329) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1063 total aligned reads displayed.

GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376
                                                                                                                                  |                                                                                                                               
  taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtt                                                                                                                               >  1:576767/1‑128 (MQ=255)
   aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttt                                                                                                                              >  2:2038435/1‑128 (MQ=255)
   aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttt                                                                                                                              >  2:548035/1‑128 (MQ=255)
    atatTTAGTTTCATTAATTTATCGCACTTGTATTAAATAGTAAGAAACTAAAACTATTA‑TCTTTTAAGATATTTATTGTATATGC‑AA‑ATTTTTATAAAATTAATATGAAATTTTAAAAAATAGAttta                                                                                                                             >  1:966953/1‑127 (MQ=255)
     tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttt                                                                                                                            >  1:2022576/1‑128 (MQ=255)
      atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGATCTTGTAAAAAATAGAtttttt                                                                                                                           >  1:1089559/1‑128 (MQ=255)
      atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttt                                                                                                                           >  1:2072760/1‑128 (MQ=255)
      atTTAGTTTAATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTAATA‑TCTTTTTAGATATTATTTGTATACTC‑AA‑ATTTTTAATAAATTAATTTGAACTTGTAAAAAATAGCttttta                                                                                                                           >  2:1623078/1‑127 (MQ=255)
         tattttAATTATTTTATAGCAATTTTATTAATTATTAATAAAATAAAAATATTA‑TCTTTTTTTATATTTTTTTTATATTC‑AA‑ATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGCttttttttt                                                                                                                        <  2:354706/125‑1 (MQ=255)
         tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                        >  2:770178/1‑128 (MQ=255)
          aGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtttttttttt                                                                                                                       >  1:314653/1‑128 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                      >  1:91816/1‑128 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGA‑AA‑ATTATTAAAAAATTAATTTGAAATTGTAAAAAATATCttttttttttt                                                                                                                      >  1:1171886/1‑128 (MQ=255)
            tttGATTAATTTATCGCACTTGTATGAATTAGTAAGAAACAAAAACTATTA‑TCTTTTTAGATATTATTTGTATATGC‑AA‑ATTTTATAAAAATTAATTTTAAATTGT‑AAAAATAGAttttttttttttt                                                                                                                    >  2:2151273/1‑128 (MQ=255)
            tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttt                                                                                                                     >  2:209137/1‑128 (MQ=255)
            tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttt                                                                                                                     >  2:1236736/1‑128 (MQ=255)
            tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttatttttt                                                                                                                     >  2:140958/1‑128 (MQ=255)
             ttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttatttttttt                                                                                                                    >  1:1432489/1‑128 (MQ=255)
              tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTATTTTGAACTTATAATAATTAGCtttatttttatttt                                                                                                                   >  2:1050405/1‑128 (MQ=255)
              tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                   >  1:1740361/1‑128 (MQ=255)
              tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                   >  1:503221/1‑128 (MQ=255)
                aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATAC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtatttttttttttatt                                                                                                                 >  2:1583366/1‑128 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataa                                                                                                            >  1:2398774/1‑127 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGA‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttttta                                                                                                            >  1:744402/1‑126 (MQ=255)
                        aTCTCACTTTTTTTAATTACTTATAAAATAAAACAATTA‑TATTTTTATATATTTTTTTTATATGC‑AA‑ATTTTTAAAAAATTAATTTTAACATGTAAAAAATAGCTTTTTTTTTTTTTTTTtataatgg                                                                                                         <  1:41842/128‑5 (MQ=255)
                         tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTATTTTTTTTTtataaatta                                                                                                        >  1:1204324/1‑123 (MQ=255)
                          cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTttattaattaaa                                                                                                       >  2:1471092/1‑122 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCTTTTTTTTTTTTTTTTTTAAAAATTTAAat                                                                                                   >  1:1801121/1‑128 (MQ=255)
                               ttGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTATTTTaatatgtatatat                                                                                                  >  2:934402/1‑119 (MQ=255)
                                  tttgtatttttaataaATTAAAAATATTA‑TTTTTTTATATATTTTTTGTTTTTTC‑AA‑ATTTTTAAAAAATTAATTTTTATTTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                            <  2:1318244/118‑1 (MQ=255)
                                   attaaTTTGTAAGAAAATAAAAATATTA‑TATTTTTAGATATTTTTTGTATATTC‑AA‑ATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                            <  2:881259/125‑1 (MQ=255)
                                    tttatttttattaaaataaaaataTTATTATTTTTTTTTTTTTTTTTTTTATGA‑AA‑TTTTTTAAAAATTTAATTTTAATTTTTAAAAAATTG‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                            <  2:2420260/116‑1 (MQ=255)
                                    tgtaTTTGTAACAAAAAAAAAATTTAA‑TATTTTTTTATATTTTTTGTATATTC‑AA‑ATTTTTAAAAAATTAATTTGAACTTTTAAAAAAAAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                            <  2:2254834/125‑1 (MQ=255)
                                      tattatttataaactaaaaattTTT‑TATTTTTTTCTTTTTTTTTTTTATTCTAA‑ATTTTATAA‑AATTAATTTTTAATTGTAAAAAAAAG‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtttt                                                                                          <  1:2352710/118‑1 (MQ=255)
                                       attatttataaaataaaaataTTA‑TATTTTTATATATTTTTTTTTTATTC‑AA‑ATTTTTAAAAAATTAATTTTAAATTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAg                                                                                        <  1:1976328/119‑1 (MQ=255)
                                          aGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAAAAAAAAATTTatta                                                                                      >  1:215116/1‑125 (MQ=255)
                                          aGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATTGAATAATAAATTTTAgtt                                                                                      >  2:1539460/1‑126 (MQ=255)
                                           tttagtaactaaaatatTTT‑TATTTTTATTTTTTTTTTTTATTTTT‑AA‑ATTTTTTAAAAATTAATTTTAAGTTTTAATAAATATGTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                      <  2:252124/122‑1 (MQ=255)
                                           ataataaATTAAAAAAATTA‑TTTTTTTTTATTTTTTTTTTATATTT‑AA‑ATTTTTAAAAAATTAATTTTTAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                     <  2:1173499/127‑1 (MQ=255)
                                             aaGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATTTAAAAATAAATTTTAAGtttt                                                                                   >  1:669640/1‑128 (MQ=255)
                                                  actaaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAAAAAAAATTTTATTTATTttgtt                                                                              >  1:1884612/1‑128 (MQ=255)
                                                  actaaaactaTTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATtttttt                                                                              >  2:1689390/1‑128 (MQ=255)
                                                  actaaaactaTTA‑TCTTTTTAGATATTATTTGTATATGC‑AA‑ATATTTAAAAAATTAATTTGAACTTGTAATAAATATC‑TTTTTTTTTTTTTATTTTATAATTATAATATATTTTATATATAtttttat                                                                              >  1:351647/1‑125 (MQ=255)
                                                       aactaTTT‑ACTTTTTAGTTATTTTTTGTTTTTGT‑AA‑ATTTTTAAAAAATTAATTTGAAATTGTAAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                        <  1:821860/128‑1 (MQ=255)
                                                       aactaTTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTGAAATTTAAAATTTTTTTAtttttgtttaata                                                                        >  1:597568/1‑119 (MQ=255)
                                                       aaatatta‑tATTTTTTTTTTTTTTTTTTATATTC‑AA‑AATTTTAAAAAATTTATTTGTACTTGTAAAAAATA‑TGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                         <  2:308504/125‑1 (MQ=255)
                                                        aaagataatagttttAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTATTAT‑‑T‑GAAATATAAATTTTATTTTTTTTGTTTTATAAg                                                                       >  2:1272903/12‑128 (MQ=255)
                                                         atatta‑tCTTTTTTCTTATTTTTTGTATATTA‑AA‑ATTTTTAAAAAATTAATTTGAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                       <  1:787604/127‑1 (MQ=255)
                                                          tatta‑tCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATCTAAATATAAATTTTTGGTATTTTTTTGTATaatt                                                                      >  1:2184667/1‑126 (MQ=255)
                                                             atttttttttATATTTTTTTTTTTTTTTT‑AA‑ATTTTTAAAAAATTTATTTTAATTTTTTAAAAAT‑TTATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                    <  2:1812668/123‑1 (MQ=255)
                                                              a‑tCTTTTTTTATATTTTTTTTATATTA‑AA‑ATTTTTAAAAAAATATTTTTTAATTTTTAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                  <  2:1869126/128‑1 (MQ=255)
                                                              a‑tCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATtttttttaataattaaat                                                                  >  1:1902176/1‑116 (MQ=255)
                                                                tCTTTTTAGATTATTTTTTTATAAGC‑AA‑ATTTTTAAAAAATAAAATTGAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTa                                                                 <  2:514885/128‑1 (MQ=255)
                                                                     ttAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTTATTTTTTGTTTAAGttagaataaaa                                                            >  1:243556/1‑118 (MQ=255)
                                                                     ttAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATATTAGTTATTTTTTTTTATAAGTATCaaaaaaaa                                                           >  2:1895303/1‑128 (MQ=255)
                                                                      tAGATATTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTGTTTTTTTTTTTTT‑‑TAATGGAAATATAAATTTTAGGTTTTTTGTTGTATAATTAGATAAAAAAAt                                                          >  2:2198581/1‑128 (MQ=255)
                                                                         atatTTTTTGTTTATGG‑AA‑ATTTTTAAAAAATAATTTTGAATTTTTAAAAAATAG‑‑GTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                       <  2:2381035/128‑1 (MQ=255)
                                                                         atatTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAAAATAAAATTATTTTATTTTTTTTTATAATTTTATAAaataatta                                                        >  1:1535056/1‑126 (MQ=255)
                                                                          ttttttttttttATGG‑AA‑ATTTTTTAAAAAATAATTTTTACTTGTAAAAAATAG‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                       <  1:1147868/126‑1 (MQ=255)
                                                                          atttttttttttttGA‑AA‑ATTTTTAAAAAATTTATTTGTAATTTTAAAAAAAATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                       <  1:2264744/126‑1 (MQ=255)
                                                                           tttttttttttATTA‑AA‑ATTTTTTAAAAATTAATTTTAAATTTTAAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa                                                      <  1:1658792/127‑1 (MQ=255)
                                                                           atTTTTTTTATTTGT‑AA‑TTTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg                                                    <  1:1016414/128‑1 (MQ=255)
                                                                           atTTTTTGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTCTAAGTATATAAAAAAATATaa                                                      >  1:1326245/1‑128 (MQ=255)
                                                                            ttttttGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTTTTTTTTTTTATAATTTTAaaaaaaaaaaaaaaaa                                                   >  1:169587/1‑126 (MQ=255)
                                                                              ttttGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTGTTGTATAAGTATATAAAAAATTAGaaat                                                    >  1:1382688/1‑127 (MQ=255)
                                                                              ttttGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATTATATAAAAAAAAATaaataa                                                  >  1:124819/1‑125 (MQ=255)
                                                                              ttttGTATATGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTTTATAAGTATATaaaaaaaattaaagta                                                  >  2:387034/1‑119 (MQ=255)
                                                                               ttttTATATTC‑AATATTTTAAAA‑AATTAATTTTTTATTTTAAATAA‑ATTGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                  <  1:2299555/128‑1 (MQ=255)
                                                                                   tttttattaataTTTTTAAAAAATTATTTTGATTTTTTTAAAAATTTC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                <  2:592108/117‑1 (MQ=255)
                                                                                    atatTC‑AA‑TTTTTTAAAAAAATAAATTTAACTTTTTAAAAATATGTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                              <  1:2208454/128‑1 (MQ=255)
                                                                                      atGC‑AA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTTTATAAGTATATAAAAAAATATAAATGAAAAAattt                                          >  1:884586/1‑126 (MQ=255)
                                                                                       attata‑aTTTTTTAAAAATTTATTTTTAATTTTTAAAAATATTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                            <  2:2280165/123‑1 (MQ=255)
                                                                                        attcataTTTTTTAAAAATTATTTATAAATTTTAAAAAATTTC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAata                                           <  1:2465385/122‑1 (MQ=255)
                                                                                           aa‑aTTTTTAAAAAATTTATTTTAAATTGTTAAAAAT‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGtt                                      <  2:840608/128‑1 (MQ=255)
                                                                                            ataTTTTTAAA‑AAATAATTTTTAATTGTTAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGtt                                      <  2:1361108/126‑1 (MQ=255)
                                                                                            a‑aTTTTTAAAAAATTATATTTTACATGTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGGCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                     <  2:2453331/128‑1 (MQ=255)
                                                                                               ttttTAAAAAATTAATTTTAAATTGTAAAAAA‑A‑TTATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaa                                   <  2:1911217/128‑1 (MQ=255)
                                                                                               ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGAAAATTAAAATTTTAGTTTTTTTTTTGTAAAATTAAATAAAAAAAAAAAAAGTAAAAAATATTTTTaaa                                   >  2:2312878/1‑128 (MQ=255)
                                                                                               ttttAAAA‑AAATAATTTTTAATTTTAAAAAATA‑TATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaa                                   <  1:193452/128‑1 (MQ=255)
                                                                                                tttATAAAAATTAATTTTAAATTTTATAACATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaa                                   <  1:297518/128‑1 (MQ=255)
                                                                                                      aaaattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTGAAATTTAATTTTTAGGTTTTTTTTTGTATAATTTTATAAAAAAATTAAAAGTAAAAAAATTTGTTAAAAGTaa                              >  1:1571796/3‑128 (MQ=255)
                                                                                                        aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAATTTTTAGTTATTTTTTTTTATAATTATAAAAAAAAATAAAAATAAAAAAATTTTTTTAAAATTaaaaat                          >  2:652932/1‑124 (MQ=255)
                                                                                                        aattaaatTTTAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                           <  2:1952540/128‑1 (MQ=255)
                                                                                                         attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAAATTTTAGGTATTTTTTTGTGTAATTATATAAAAAAATATAAAGTAAAAATTATTGTTAAAATTAATaat                          >  1:526748/1‑126 (MQ=255)
                                                                                                         attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAATAATGTAAATTTAATTTTAAGTTTTTTTGTTGTCTAATTTAGAAAAAAATTACAAAGTAAAAATTTTTGTTAAAATTAATaa                           >  2:1993680/1‑127 (MQ=255)
                                                                                                         attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAAAAATTGAAATAAAATTTTTTGGAATTTTTTTGAGAATGTTTAAAAAAAAATAACAAGGAAAAAATATTTTTAAAAGTaaaaat                          >  1:2231185/1‑124 (MQ=255)
                                                                                                         attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTTTCTAATTATATAAAAAAATATAAATGAAAAAATATTTTTAAAATTAATACTaaa                       >  1:640613/1‑128 (MQ=255)
                                                                                                          ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGTTTTTTTTTTTCTAATTATATAAAAAAATAAAAAGTAAAAAATATTTTTATAATtaataataa                        >  2:462953/1‑128 (MQ=255)
                                                                                                               ttGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTTGTATTTTTTTGTAAAATTATATAAAAAAATATAAATTAAAAAATATTTTTAAAATTAATAATAAAatta                   >  1:847854/1‑128 (MQ=255)
                                                                                                                  aaCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGAAAAATAAAATTTTTGTTATTTTTTTTTATAATTAATAAAAAAAATAAAAAATAAAAAATATTTTTTAATTTTATAATAAAtttttt                 >  1:462531/1‑128 (MQ=255)
                                                                                                                   aatttttaaaaaTATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                <  1:1291956/121‑1 (MQ=255)
                                                                                                                   aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTGTATAATTATATAAAAAAATATAAAGTAAAAAATTTTTTTAAAATTAATAATAAAATTATTTa               >  1:1481805/1‑128 (MQ=255)
                                                                                                                    cTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTGAAATATAAATTTTAGGTATTTTTTTTTAAAAGTATATAAAAAAATATAAAGTAAAAAATTTTTTTAATATTTATAATAAAATTAtttta              >  2:17475/1‑126 (MQ=255)
                                                                                                                    attttAAAAAATATCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                <  2:1118329/124‑1 (MQ=255)
                                                                                                                      tGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTTTATAATTTTATTAAAAAATTGAAAGTAAAAAATTTTTTTAAAAGTAATACTAAAATtaattaat             >  1:716714/1‑128 (MQ=255)
                                                                                                                        tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTTGTTATTTTTTTGTATAAGTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTATAAAAAAAATTATATAAttt           >  1:1608029/1‑126 (MQ=255)
                                                                                                                            aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTGTCTAATTATATAAAAAAATTGAAAGGAAAAAATATTTTTAAAATTATTACAAAAATTAtttaattttaat       >  2:500503/1‑128 (MQ=255)
                                                                                                                            aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAACATAAATTTTATGTATTTTGTTTTCTAAGTTTATAAAAAAATAGAATGGAAAAAATATTGTTAATATTAATACTAAAATTATTTAATGtttat       >  1:2040761/1‑128 (MQ=255)
                                                                                                                             aaTAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGTTTTTTTTTTGTAAAAGTATATAAAAAAAAATAAAGTAAAAAATATTTTTAAAATTAAAAAAAAAATTATttaattttaatt      >  2:802894/1‑128 (MQ=255)
                                                                                                                                aGCTTTTTTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTATGTTTTTTTTTTGATAAATATATAAAAAAATATAAAGAAAAAAATATTGTTAAAATTAATAAAAAAATTTTTTATTTttaataat    >  2:689555/1‑125 (MQ=255)
                                                                                                                                  |                                                                                                                               
GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTA‑TCTTTTTAGATATTTTTTGTATATGC‑AA‑ATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.