BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 202486	70 (0.060)	215 (0.190)	72/252	14.6	72.6%	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
*	?	CP016816	202490 =	92 (0.080)	215 (0.190)	72/252	14.6	72.6%	intergenic (+268/‑407)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 259 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202370‑202617

ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑Ttaaaaaataaaa                                                                                                                         >  1:2248177/1‑128 (MQ=255)

  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaa                                                                                                                      >  1:2047461/1‑128 (MQ=255)

  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATtaaaaattaaaaaa                                                                                                                       >  2:1926634/1‑128 (MQ=255)

  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAATtaaaaattaaaaaa                                                                                                                       >  1:1897953/1‑128 (MQ=255)

    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaa                                                                                                                    >  1:261070/1‑128 (MQ=255)

    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAACAACAATCCCC‑‑TTAAAAATTaataaaaa                                                                                                                     >  2:766982/1‑128 (MQ=255)

     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTAATTTTTTTATCATCAAAAAT‑AAAAAAAAAAAAA‑‑AAAAATTAAAAAATaaaaaaaaa                                                                                                                    >  2:1466808/1‑128 (MQ=255)

        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAAATACC‑ATAAAAAAATaaaaaaaaa‑aa                                                                                                                 >  2:1884077/1‑128 (MQ=255)

         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAC‑‑‑ATAAAAAATtaaaaaaaa‑aaaaa                                                                                                              >  1:1844153/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCATGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATCAAAAT‑‑‑AAAAATaaaaaaaaa‑aaaaaa                                                                                                             >  2:52917/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaa                                                                                                              >  2:2217290/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaa‑aaaaa                                                                                                              >  2:2237188/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATAAACATAaaaaaaaaaaaaaaaaa‑aaa                                                                                                                >  2:930039/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATTaaaaaaaaa‑aaaaaa                                                                                                             >  2:2430654/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaa                                                                                                             >  1:2091427/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaa                                                                                                             >  2:235560/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTG‑TTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaa                                                                                                            >  1:1977119/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTATTTATTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCAATT‑‑‑AAAAATaaaaaaaaa‑aaaaaaa                                                                                                            >  2:1126614/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATAACC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaa                                                                                                            >  2:1923518/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaaa                                                                                                           >  2:566676/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAAACAACATaaaaaaaaaaaaaaaaaa‑aaaaaa                                                                                                             >  2:1348800/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAAAAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaaa                                                                                                           >  2:1306033/1‑128 (MQ=255)

              gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTATATTTACAAAA‑TAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaaaa                                                                                                          <  1:2034919/128‑1 (MQ=255)

                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑‑TAAAAAATaaaaaaaaa‑aaaaaaaaaaaa                                                                                                       >  2:2313971/1‑128 (MQ=255)

                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAA‑‑ACAAATAAAAAAATaaaaaaaaa‑aaaaaaaaaaaa                                                                                                       >  1:539248/1‑128 (MQ=255)

                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaaaaaaa                                                                                                       >  2:245718/1‑128 (MQ=255)

                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTATTATATTTTTTTATCTTCAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATAAAAAATTaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                      >  1:2423883/1‑127 (MQ=255)

                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACAACATAaaaaaaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                                        >  2:1173809/1‑128 (MQ=255)

                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                      >  1:294289/1‑127 (MQ=255)

                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAAAATTaaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                   >  1:2406922/1‑124 (MQ=255)

                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTaaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                   >  1:1260475/1‑124 (MQ=255)

                      aaaaaacaaaaaaTTAATAAATATTAAAATTTATTTCCCCGTTTTCATTTTTTTTATTTTTTTAACTTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTaaa                                                                                                  <  1:132770/119‑1 (MQ=255)

                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaa‑aaaaaaaaaaaaaaaaac                                                                                                 >  2:2105704/1‑122 (MQ=255)

                        aaacaaTAAAATTAAAAAATATTATAATTTATATCATCGTTATATATTTTTTTATTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAACCC‑‑ATTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTaaaaa                                                                                                <  1:2141488/123‑1 (MQ=255)

                         aaacaaaaaaataataaTTATTATAAATTATATACACTTGTTATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAaaac                                                                                               <  1:1527878/117‑1 (MQ=255)

                           aaaTAAAATTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTAAATTTTTATAATAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                                            <  1:1380736/126‑1 (MQ=255)

                                aaCTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTAAAAAAAAA‑AAAAAAAAAAAATaaaaaaaaaatact                                                                                        >  1:1555574/1‑124 (MQ=255)

                                aaCTTAAAAAATATTATAATTTAAATAATATTTATATATTTTTTTATTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAActct                                                                                        <  1:2454398/128‑1 (MQ=255)

                                 aCTTAATAATTATTATAATTTATATACACTGTATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAAACCCC‑‑ATAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:549064/128‑1 (MQ=255)

                                  attAATTATTAATATAATGTTTATTATCGTGTAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:67230/127‑1 (MQ=255)

                                  attAATAATTAATATAATTTATATCATAGTTATATATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                      <  1:151982/127‑1 (MQ=255)

                                  aataaaaaattttATAAATTAGATACTCTTGATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑CTTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:34526/117‑1 (MQ=255)

                                         attataaaaaTTTATATCCTCTTGATTTATTTTTTTATTTTTTAATCAAAAAAAAA‑AAAAAAAAAACAAATCCCAT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  2:437491/120‑1 (MQ=255)

                                                        atccatgTGATATATTTTTTTATTTGTTTAACATCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                <  1:2307846/122‑1 (MQ=255)

                                                         tcatgtttttttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑AATAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                               <  2:2043904/117‑1 (MQ=255)

                                                         tcatgttGATCTATTTTTTTATATTTATA‑CTTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACca                                                              <  1:1620660/122‑1 (MQ=255)

                                                         tacacgttataaaTTTTTTTATTTTTTATTTTTAACAAAA‑AAAAAAAAAAAAATACCC‑‑‑AAAAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:1224361/116‑1 (MQ=255)

                                                         tCCTCGTGATCTTTTTTTTTATTTTTTTATCATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                               <  1:2009425/128‑1 (MQ=255)

                                                          aaatttttattATTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAATCCCAT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                             <  1:1689026/118‑1 (MQ=255)

                                                             tttgttatATTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAATAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                             <  1:1275388/121‑1 (MQ=255)

                                                              gTGATTTTTTTTTTTATTTTTTTAAATTTAAAAAA‑TAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:1875918/128‑1 (MQ=255)

                                                              gTGATTTAATTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:1628364/128‑1 (MQ=255)

                                                              gTGATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  1:301041/128‑1 (MQ=255)

                                                                 taattttttttttttttttTATATTAAAAAAA‑AAAAAAAAAAAAAAAACCAATTAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:389679/123‑1 (MQ=255)

                                                                    attttttttATTT‑TTTATTATACAAAAA‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:2302583/126‑1 (MQ=255)

                                                                     ttttttttatttttttaAATTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:2187932/127‑1 (MQ=255)

                                                                      ttttttttttttttAATATTAAAAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAAT‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  1:1650983/128‑1 (MQ=255)

                                                                      ttttttttttttTATATATTTAAAAAT‑TAAAAAAAAAAAAACAC‑‑ATTAAAAATTAAAAAAAAATAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:2421248/128‑1 (MQ=255)

                                                                      tttttttatttttttaTATAAAAAAAA‑AAAAAAAAAAAAAACCAC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  2:2007418/128‑1 (MQ=255)

                                                                      tttttttatttttttaTAATCAAAAAT‑AAAAAAAAAAAAAAACCC‑TAAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:2082020/128‑1 (MQ=255)

                                                                      ttttttaATTTTATAATTTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                 <  1:1762308/128‑1 (MQ=255)

                                                                        tttttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  2:2371955/128‑1 (MQ=255)

                                                                          tttATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                             <  1:1965142/128‑1 (MQ=255)

                                                                            tATTTTTTTATAATAACAAAT‑AAAAAAAAAAACAAACCC‑‑AAAAAAAAT‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                           <  1:2223153/128‑1 (MQ=255)

                                                                              tttGTTTATCTTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa                                          <  1:661993/128‑2 (MQ=255)

                                                                               ttGTTTATTATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                         <  1:174935/128‑1 (MQ=255)

                                                                               tattttATATTTAAAAAA‑AAAAAAAAAAAAAATCCCATTT‑AAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                          <  1:1176943/125‑1 (MQ=255)

                                                                                tttttaaataatcaAAT‑AAAAAAAAAAAAAATTCCATTAAAAAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                          <  1:807464/116‑1 (MQ=255)

                                                                                  tttttttttaaaaaa‑aaaaaaaaaaaaATCACCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  2:849348/117‑1 (MQ=255)

                                                                                  tttataataaaaaaT‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:141644/117‑1 (MQ=255)

                                                                                  tttATATTAAAAAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:1449226/128‑1 (MQ=255)

                                                                                  taaaaaaaaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAAAT‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:604730/117‑1 (MQ=255)

                                                                                    tttatttaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                    <  2:1844153/119‑1 (MQ=255)

                                                                                    taaattaaaaaaa‑aaaaaaaaaaaaATACCATTT‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  1:1827791/119‑1 (MQ=255)

                                                                                     ttaattaaaaaa‑aaaaaaaaaaaaATACC‑‑ATTAAAAATTAAAAAAAAA‑AAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  1:1217202/120‑1 (MQ=255)

                                                                                     atattttaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTATAAAATTTAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  2:296425/120‑1 (MQ=255)

                                                                                     aTCTTAAAAAAT‑AAAAAAAAAAAAATTACC‑‑TAAAAAATTTAAAAAAAA‑AAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  1:1855217/128‑1 (MQ=255)

                                                                                       aataaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:1160386/122‑1 (MQ=255)

                                                                                        ataaaaaaa‑aaaaaaaaaaaaATCAC‑‑ATTAAAAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                <  1:2336635/123‑1 (MQ=255)

                                                                                         taacaAAA‑AAAAAAAAAACAAACCCCTAAAAAATTAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:1686645/126‑1 (MQ=255)

                                                                                         tCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAA‑TAAAAACAAAATCTATTAATTAAAATTACATATTAAACAAAATTTTATTTTTAAATAATGTTATTAAaataat                             >  1:2076379/1‑128 (MQ=255)

                                                                                          aaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                               <  1:10646/125‑1 (MQ=255)

                                                                                          aaaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAAAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                              <  1:235560/125‑1 (MQ=255)

                                                                                          aaaaaaT‑AAAAAAAAAAAAATACC‑‑ATTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                              <  1:2062980/125‑1 (MQ=255)

                                                                                          aaaaaaT‑AAAAAAAAAAAAAT‑CACATTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                               <  1:1299985/125‑1 (MQ=255)

                                                                                             aaaa‑aaaaaaaaaaaaATCCCCTT‑‑‑AAAAAT‑‑TTAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  2:1897953/128‑1 (MQ=255)

                                                                                                t‑AAAAAAAAAAAAATACCC‑ATAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                         <  1:1943968/128‑1 (MQ=255)

                                                                                                  aaaaaaaaaaaaaaACACCTTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                         <  1:994259/128‑1 (MQ=255)

                                                                                                    aaaaaaaaaaAT‑ACCATTAAAAATAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                      <  1:1130684/128‑1 (MQ=255)

                                                                                                    aaaaaaaaCAATCCCC‑TTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAAATAAAAAAAAACTATTTTTGTTAAAAAAGCCTTTTATACCAAATTTTTTTTTTAAATAAAAATATTTAAataaattttata                      >  2:1984553/1‑120 (MQ=255)

                                                                                                        aaaaCAATCCCC‑TTAAAAATTAAAAAAAAAA‑AAAAAAAAAAAAATAAAAAAAAACTAAATTAAATAAAAATAAATAATATACAAAATTTTATTTTTAAAATAAAATATTTAAATAATAAATATATaaa                  >  1:554015/1‑127 (MQ=255)

                                                                                                          aaaaaaatcaccttaaaaattaaaaaAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                 <  2:2322454/116‑1 (MQ=255)

                                                                                                              aaataacaataaaaattaaaaaaAAA‑AAAAAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata             <  2:615277/119‑1 (MQ=255)

                                                                                                               aatacccttaaaaattaaaaaAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:2199114/121‑1 (MQ=255)

                                                                                                                 ccaaaaaaaataaaaaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa          <  2:1364123/121‑1 (MQ=255)

                                                                                                                    acattaaaaataaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatataatacta       <  1:2301398/123‑7 (MQ=255)

                                                                                                                    aataaaaataaaaaaaaAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:446139/124‑1 (MQ=255)

                                                                                                                      cttaaaaattaaaaaAAA‑AAAAAAAAAAAAATAAAAACAAACACAATTTCTTAAAATTCACTATAAAACCAAATTTTATTTTAAAAATAAAATATTAAAAAAATAtatatataatatatataaaaata     >  1:857867/4‑123 (MQ=255)

                                                                                                                       taaaaattaaaaaaAAA‑AAAAAAAAAAAACTAAAAAAAAACTCTATTTGTTAAAATACCATTTTATACCACATTTTTTTTTTAAAATAATATTTTTAAATATTTTTAATATAATATAAATAATAatat    >  2:2154253/1‑128 (MQ=255)

                                                                                                                         aaaattaaaaaaAAA‑AAAAAAAAAAAACAAAAAACAAACTCTTTTTATTAAAATACCCTTTTATACCACATTATATTTTTAAAATAAGATATTGACATAATAAATATCTAATATATATAATGatatat  >  1:2126728/1‑128 (MQ=255)

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202370‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.