Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA33.7% 1831.5 / 164.6 1086intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (219/469);  new base A (305/44);  total (571/515)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1101 total aligned reads displayed.

AAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165175‑165430
                                                                                                                                |                                                                                                                                 
taaaataTTTTTTTTTTTTATTTTTTTTTTATTTTCAAATTTTTTAAAAATTTATTTTTAATTTTTAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCt                                                                                                                                  <  2:1688687/127‑1 (MQ=255)
 aaaaattaatatttttAGATATTTTTTGTTAATTCAAAATTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                                                <  2:1407532/117‑1 (MQ=255)
  aaagataatagttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTATTAT‑‑T‑GAAATATAAATTTTATTTTTTTTGTTTTATAAg                                                                                                                               >  2:1272903/12‑128 (MQ=255)
     tattatTTTTTTATATATTTTTTTTATTTTTATATTTTTATAAAATTAATTTTAAATTTTAAAAATT‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTa                                                                                                                             <  1:1450142/128‑1 (MQ=255)
      ttaatatattttGATATTTTTTGTTTATGAAAATTTTTTAAAAATTAATTTGAACTTGTCAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                                           <  2:2398104/120‑1 (MQ=255)
      attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTAAAATAAAAATTTTA‑GTATTTT‑TTTTCTaaaattt                                                                                                                           >  2:493955/1‑123 (MQ=255)
       ttttttttttAGATATTTTATGTTTATGCAAATTTTTAAAAAATTAATTTGTACTTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                                                                            <  1:702521/123‑1 (MQ=255)
       ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATTAt                                                                                                                            >  1:350386/1‑128 (MQ=255)
        tatttttttttttatTTTTTTTATTTTTAATTTTTTTAAAATATAATTTTTAATTTTAAAAAA‑AATTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                                           <  1:424921/116‑1 (MQ=255)
        tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTTTAAATATAAATTTTATTTATTTTTTTTTATAATTaaa                                                                                                                           >  1:754770/1‑126 (MQ=255)
        tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATATAAATATAAATTTTATTTATTTTTTTTTATAATTAtat                                                                                                                          >  1:861609/1‑126 (MQ=255)
          tCTTTTTAGATTATTTTTTTATAAGCAAATTTTTAAAAAATAAAATTGAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTa                                                                                                                         <  2:514885/128‑1 (MQ=255)
           cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTATATaa                                                                                                                        >  1:2338617/1‑128 (MQ=255)
             ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTATAATTATATaaaa                                                                                                                      >  2:1744404/1‑128 (MQ=255)
              tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑‑TTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTCTAAGTATCTATAAAAATAg                                                                                                                >  1:201301/1‑128 (MQ=255)
               ttttttatTTTTTTTTTATTATAATTTTTAAAAAAATAATTTTTACTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                                                                                   <  1:1847907/123‑1 (MQ=255)
               ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTTATTTTTTGTTTAAGttagaataaaa                                                                                                                    >  1:243556/1‑118 (MQ=255)
                tattatttttttttATATTTAAATTTTTTAAAAATTAATTTTTAATTTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                                                                                    <  1:189183/122‑1 (MQ=255)
                  tatatTTTTTTTATTTTTAAATTTTTAAAAAATTTATTTTTAATTGTTATAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGATATATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                                                                                 <  1:131683/127‑1 (MQ=255)
                    tatTTTTTGTATATTCAAATTTTAAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTATTTTATTTA‑AATAAAAATTAAAATTTAATGAATTTTATAGTCAAAGTAACTaaaaaaaaata                                                                                                               >  2:2113525/1‑124 (MQ=255)
                     atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATaaa                                                                                                               >  2:1859996/1‑126 (MQ=255)
                       tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑ATTGTAAATATAATTTTTAGGTATTTTTTTTTATAATATTATAAAAAAATAAAAAg                                                                                                            >  2:442005/1‑128 (MQ=255)
                        ttttttttattaaaaTTTTTAAAAAAATAATTTTTAATTTTTAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAgg                                                                                                           <  2:181754/116‑1 (MQ=255)
                        ttttttttATTCTAATTTTTAAAAAATTAATTTTTAATTGTAAAAAAT‑‑TTGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGa                                                                                                          <  2:1649597/128‑1 (MQ=255)
                        ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTATTTTTTTTTATAATTATCTAAAAAAATAaaaatg                                                                                                           >  1:1913216/1‑126 (MQ=255)
                        ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTA‑AATTGAAATATAAATTTTTGTTATTTTTTTTTCTAAATATGaaaaaaaaataaaagata                                                                                                         >  2:539577/1‑118 (MQ=255)
                           ttttaatttaaaTTTTTAAAAAATTAATTTTTACTTTTTAAAAATA‑AGATTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                                                        <  1:2255672/119‑1 (MQ=255)
                             tataTTCAAATTTATAAAAAATTAATTTTTATTTGTAAAAAAAATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                                                                      <  2:1905038/128‑1 (MQ=255)
                              atatTCAATTTTTTAAAAAAATAAATTTAACTTTTTAAAAATATGTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                                                                      <  1:2208454/128‑1 (MQ=255)
                               tatTCAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑TGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                    <  2:2022576/128‑1 (MQ=255)
                                attcataTTTTTTAAAAATTATTTATAAATTTTAAAAAATTTC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAata                                                                                                   <  1:2465385/122‑1 (MQ=255)
                                    aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTTTATAATTTTATAAAAAAATAAAAAGTAAAAAATATTTTTa                                                                                             >  1:1126906/1‑128 (MQ=255)
                                      aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTGTATATTTAAATAAAAAAATAAAAATTAAAAAATATT‑TTaaa                                                                                           >  1:1591688/1‑128 (MQ=255)
                                              aaatttaattttaattTTTAAAAAAT‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                   <  2:352255/124‑1 (MQ=255)
                                               aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATTTAATTTTTAGTTATTTTTTTTTATAAGTATATAAAAAAATAAAAATAAAAAAATATT‑TTaaaatttatta                                                                                   >  1:1517693/2‑121 (MQ=255)
                                                aattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTTGGTTTTTTTTTTTATAAGTATATAAAAAAAAATAAAGAAAAAAAAATTTTTAAAAGTAATaa                                                                                   >  2:637290/1‑127 (MQ=255)
                                                aattaaatTTTAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                   <  2:1952540/128‑1 (MQ=255)
                                                 attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAATTTAAATTAAAATTTTAGTTTTTTTTTTTTAAAATTAAATAAAAAAAAAAAATGTAAAAAAT‑TTTTTAAAATTaaataa                                                                                  >  1:993225/1‑124 (MQ=255)
                                                 attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAAATTTTAGGTATTTTTTTGTGTAATTATATAAAAAAATATAAAGTAAAAATTATTGTTAAAATTAATaat                                                                                  >  1:526748/1‑126 (MQ=255)
                                                 attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATTATATAAAAAAATATAAATTAAAAAATATTTTTaaaataaagtaa                                                                                  >  1:90751/1‑120 (MQ=255)
                                                 attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTATAT‑ATTGATATATAAAATTTATGGTTTTTTTTTTATAAATTAATTAAAAAAAATTAATGAAAAAATATGTTtaataataaataaa                                                                                 >  1:308676/1‑123 (MQ=255)
                                                 attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTGTATAATTATATAAAAAAATATAAAGTAAAAAATATTTTTaaaattttaaaaa                                                                                 >  1:1192467/1‑119 (MQ=255)
                                                  ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAAATTTAATTTATTTTTTTGTAAAATTATGTAAAAAAATTTAAATAAAAAAATATTTTTAAATTTAataata                                                                                 >  1:1639474/1‑128 (MQ=255)
                                                     attTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGATATATAATTTTTAGTTATTTTGTTGTAAAAGTATAAAAAAAAATAAAAATAAAAATATATTTTTAAAAGTAAAAATaaa                                                                               >  1:2385947/1‑128 (MQ=255)
                                                      tttGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTTTTTTTTTGTATAATTATATATAAAAATAGAAATGAAAAAATATTTTAAAAATTAATAATAAAat                                                                             >  1:2183551/1‑128 (MQ=255)
                                                                ttttaaaaatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATg                                                                   <  2:116603/117‑1 (MQ=255)
                                                                tttataaattttttttttttttttttttttATAATTGAAATATAAATTTTATTTATTTTGTTGTCTAATTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATg                                                                   <  1:1745605/117‑1 (MQ=255)
                                                                tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAATTGTAAATATAATTTTTATTTATTTTTTTGAATAATAATAT‑AAAAAATAGAAAGAAAAAAATTTTTTTAAAATTAATAATAAAAT‑Tattttatttt                                                                 >  1:1270768/1‑128 (MQ=255)
                                                                 ttaaaaTAGA‑TTTTTTTTTTTTTTTTTTATAAAGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGtt                                                                 <  1:662631/126‑1 (MQ=255)
                                                                    aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAACATAAATTTTATGTATTTTGTTTTCTAAGTTTATAAAAAAATAGAATGGAAAAAATATTGTTAATATTAATACTAAAAT‑TATTTAATGtttat                                                              >  1:2040761/1‑128 (MQ=255)
                                                                       tAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAATTATAAATTTTAGGTATTTTTTTTTCTATTTATCTAAAAAAATATAAAGTAAAAAATTTTTTTTATAGTAATAATAAAAT‑TATTTATTTttatt‑taa                                                          >  1:1556694/1‑128 (MQ=255)
                                                                       atattttttttttttttttttttATAATTGAAATATAAATTTTATGTATTTTTTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGttaat‑tt                                                           <  2:864105/124‑2 (MQ=255)
                                                                        atagctttttttttttttttttATAATGGAAAAATAAATTTTAGGTATTTTGTTTTAAAATTATAAAAAAAAATATAAAGAAAAAAATATTTTTAAAATTATTAAAAAATT‑TATTTAATTttatt‑taa                                                          >  2:1984839/6‑128 (MQ=255)
                                                                        aGCTTTTTTTTTTTTTTTTTTTATAATGGAAAAATAAATTTTAGGTATTTTGTTTTATAATTTAAAAAAAAAATAAAAAGTAAAAAATTTTTTTAAAA‑TATTAATAAAATATATTTAATTttatt‑taa                                                          >  2:789173/1‑128 (MQ=255)
                                                                           tttttttttttttttttttATAATGGAAATTAAATTTTTTCGTTTTTTGTTGAGTAAGTATCAAAAAAAAAAGAAAGGAAAAAATATTGTTAAATTTAATAATAAAAT‑TATTAATTTTTAAT‑aaaata                                                       >  2:2058899/1‑126 (MQ=255)
                                                                            ttttttttttttttttttATAATTTAAATATTAATTTTAGGTATTTTGTTGTATAAGTATCTAAAATTATAGAAAGGAAAAAATATTGTTAATAGTAATACTAAAAT‑TATTTAATGTTAAT‑Taaaaat                                                      <  2:2252302/128‑3 (MQ=255)
                                                                            ttttttttttttttttttAAAATGGAAAATTAAATTTTAGTTATTTTTTTGTAAAAGTATAAAAAAAAATAAAAAGTAAAAATTATTTTAAAAAGAAATAATAAATT‑AATTAAATTTAAAT‑Aaaaaat                                                      >  2:2434764/1‑126 (MQ=255)
                                                                            cttttttttttttttttttTAATGTAAATATAAATTTTATGTATTTTTTTTTATAATTTTAAAAAAAAATATAAATTAAAAAATATTTTTTAAATTAATTATAAATT‑TATTTAATTTTTATATaaaat                                                       >  2:953781/2‑127 (MQ=255)
                                                                              ttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTta                                                    <  2:1482538/128‑1 (MQ=255)
                                                                               tttttttttttttttATAATGGAATTATAAATTTTAGGTATTTTTTTGTCAAATTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATAAAAAAAT‑TATTTAATTTTAAT‑TAAAACTtaa                                                   >  1:813833/1‑128 (MQ=255)
                                                                               tttttttttttttttATAATGGAAATATAAATTTTAGTTATTTTGTTGTATAATTATATAAAAAAATATAAATTAAAAAATATTTTTAAAATTAATAATAAAAT‑TATTTATTTTTAAT‑TAAAAATtaa                                                   >  1:2153656/1‑128 (MQ=255)
                                                                                ttttttttttttttttAATGGAAATAAAAATTTTAGTTATTTTTTTTTGAAAGTTTCTAAAAAAATAGAAAGAAAAAAATATTTTTAAAATTAAAAATAAAAT‑TATTTAATTTTaat‑taaaaattaaa                                                  >  2:1368598/1‑128 (MQ=255)
                                                                                 tttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTTTCTAAGTATGTAAAAAAATAGAAAGTAAAAAATTTTTTTAAAAGTTATAATAAATT‑TATTTAATGTTATT‑TAAAAGTtaatt                                                 >  1:1161708/1‑126 (MQ=255)
                                                                                  ttttttttttttATAATTGTAATATTAATTTTATGTATTTTTTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTtaaata                                                <  2:73370/128‑1 (MQ=255)
                                                                                  ttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTTTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTtaaata                                                <  1:1813889/128‑1 (MQ=255)
                                                                                  ttttttttttttATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAATTATATAAAAAAATAGAAAGTAAAAAATATTTTTAAAAGTAATAATAAAAT‑TATTTAATTTTAAT‑AAAAAATtaaata                                                >  2:83737/1‑128 (MQ=255)
                                                                                  ttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTtaaata                                                <  2:700719/128‑1 (MQ=255)
                                                                                   tttttttttttATAATTGTAATATTAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTtaaataa                                               <  2:59572/128‑1 (MQ=255)
                                                                                      ttttttttATTATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAAc                                            <  2:160735/128‑1 (MQ=255)
                                                                                        ttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACAt                                          <  1:268035/128‑1 (MQ=255)
                                                                                         tttttATAATGGTATTATAAATTTTATGTTTTTTGTTTTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TATAACTTAAATAAAACATa                                         <  2:109956/128‑1 (MQ=255)
                                                                                           tttATAATTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATaaa                                       <  1:1352933/128‑1 (MQ=255)
                                                                                            ttATAATGGAAATATAAATTTTAGTTTTTTTGTTTTAAAAGTATATAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATAAAAAAAT‑ATTTTAATTTTAAT‑TAAAAATTAaataaaaaataaaa                                      >  2:289419/1‑128 (MQ=255)
                                                                                                aaTTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATtaa                                  <  1:469663/128‑1 (MQ=255)
                                                                                                aaTGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATtaa                                  <  2:1554559/128‑1 (MQ=255)
                                                                                                  tGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATtaata                                <  2:216712/128‑1 (MQ=255)
                                                                                                    gatatatAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:1402248/125‑1 (MQ=255)
                                                                                                        tataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATa                          >  2:898658/1‑128 (MQ=255)
                                                                                                         ataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAg                         >  2:2457687/1‑128 (MQ=255)
                                                                                                          taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  1:496891/1‑128 (MQ=255)
                                                                                                          taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  2:2326644/1‑128 (MQ=255)
                                                                                                           aaaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGtt                       >  2:2286949/1‑128 (MQ=255)
                                                                                                            aaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      >  1:169054/1‑128 (MQ=255)
                                                                                                               tttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATGTTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  1:222357/128‑1 (MQ=255)
                                                                                                               tttAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATaaactatttttatt                   <  1:1953816/128‑12 (MQ=255)
                                                                                                                      aTTTTTTTTTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTaa            <  2:1453570/128‑1 (MQ=255)
                                                                                                                      aTTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTaa            <  2:1312903/128‑1 (MQ=255)
                                                                                                                       ttttGTTTTATAATTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  2:410757/128‑1 (MQ=255)
                                                                                                                       ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:2284455/128‑1 (MQ=255)
                                                                                                                       ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:563088/128‑1 (MQ=255)
                                                                                                                       ttttGTTGTATAAGTATCTAAAAAAATAGATAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  2:1139718/128‑1 (MQ=255)
                                                                                                                        tttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          <  1:609531/128‑1 (MQ=255)
                                                                                                                         ttgttgTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  1:106552/1‑128 (MQ=255)
                                                                                                                          ttttgtATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATTTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  1:100038/126‑1 (MQ=255)
                                                                                                                          tgttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  1:1238697/128‑1 (MQ=255)
                                                                                                                          tgttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        >  1:580551/1‑128 (MQ=255)
                                                                                                                           gttttCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg       <  2:1046416/128‑1 (MQ=255)
                                                                                                                            ttgtCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTTATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  2:2227132/128‑1 (MQ=255)
                                                                                                                               tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg   <  2:1216655/128‑1 (MQ=255)
                                                                                                                                cTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAATTAGTTTAATAAACTAtttttattaat  <  1:2089722/128‑8 (MQ=255)
                                                                                                                                |                                                                                                                                 
AAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAAT‑TATTTAATGTTAAT‑TAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165175‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑