Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3110CA31.6% 2041.2 / 138.2 1090intergenic (+275/‑267)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (248/477);  new base A (295/40);  total (572/518)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1122 total aligned reads displayed.

ATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165181‑165438
                                                                                                                                    |                                                                                                                                  
       ttttAGAATTTTTTTGTATTTGCAAA‑TTTTTAAAAAAAAAAATTTAAATTGTAAAAAATA‑‑‑TGTTTTTTTTTATTTTTTTATAATGGAAATATAAATTTAAGGTATTTTGTTGTCTAAGTATCTaaaaa                                                                                                                              <  2:1371478/128‑1 (MQ=255)
        tttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑‑‑TTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTCTAAGTATCTATAAAAATAg                                                                                                                         >  1:201301/1‑128 (MQ=255)
          tAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGGTTTTTTTTTTTATATTTATATtaaaaaa                                                                                                                            >  1:2366307/1‑128 (MQ=255)
           tttttttttttttATTTTCAAA‑TTTTTAAAAAATTTATTTTTAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTGTCTAAGTATCTaaaaatag                                                                                                                           <  2:1896813/123‑4 (MQ=255)
            ttttttttttttATATTTAAA‑ATTTTTAAAAAATAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                                                                                         <  1:2155485/124‑1 (MQ=255)
             atatTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                                                                                        <  1:2408050/128‑1 (MQ=255)
             atatTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTTACTTTTAAAAAAT‑‑T‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                                                                                        <  1:298643/128‑1 (MQ=255)
             atatTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTAGTTATTTTGTTTTGTAATTATATAAAAAATTat                                                                                                                         >  1:446140/1‑127 (MQ=255)
              ttttttttttATATTCAAATTTTTTAAAAAATTATTTTTAA‑TTTTAAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                                                                                        <  1:1520633/126‑1 (MQ=255)
               atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATTTATTTTTTTTTAAAAGTAAAAAAAAAAATaaa                                                                                                                        >  2:194518/1‑126 (MQ=255)
                 tttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTGTCTAATTATATAAAAAAATAGAAAgt                                                                                                                    >  1:1646682/1‑127 (MQ=255)
                  ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATTTAATTATAAATTTTATTTTTTTTGTTTTATAATTATATAAAAAAATATAAAgt                                                                                                                    >  2:838221/1‑127 (MQ=255)
                    ttttataTTTAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                                                                                  <  2:1453798/125‑1 (MQ=255)
                    ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTTTTTTGTTTTATAAGTATCTAAAAAAATAAAAATGaa                                                                                                                  >  1:1853969/1‑128 (MQ=255)
                     tttttattaata‑TTTTTAAAAAATTATTTTGATTTTTTTAAAAATTTC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                                                                 <  2:592108/117‑1 (MQ=255)
                       tatttgttaa‑TTTTTTAAAAATTAATTTTTACTTTTTAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                                                                               <  2:2042514/120‑1 (MQ=255)
                         tatGTAAA‑TTTTATAAAAATTAATTTTAACTTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                             <  2:2014621/128‑1 (MQ=255)
                          attataa‑TTTTTTAAAAATTTATTTTTAATTTTTAAAAATATT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                                                             <  2:2280165/123‑1 (MQ=255)
                           tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTTTATAATTAAATAAAAAAAAAAAAAGAaaataaatt                                                                                                           >  2:441422/1‑125 (MQ=255)
                             cAAT‑TTTTAAAAAAATTATTTTTAACTTTTAAAAAATTG‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTg                                                                                                         <  2:784039/128‑1 (MQ=255)
                              aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTTTATAATTTTATAAAAAAATAAAAAGTAAAAAATATTTTTa                                                                                                      >  1:1126906/1‑128 (MQ=255)
                                     ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTTTTTATTTTGTTGTATATTTATATAAAAAAATATAAAGAAAAAAATATTTTTaaaat                                                                                                  >  2:25062/3‑127 (MQ=255)
                                        aaaaatttattTTAAATTTTATAAAATA‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AAt                                                                                            <  2:509117/125‑1 (MQ=255)
                                        aaaaattaattTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AAt                                                                                            <  2:900838/125‑1 (MQ=255)
                                        aaaaaataattTTAACTTGTAAAAAATAGC‑‑‑‑‑‑‑TTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTa                                                                                        <  1:513862/122‑1 (MQ=255)
                                         aaaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTA‑AATGTAATTAAAAATTTTATGTTTTTTTTTGTATAAGTATATAAAAAAATTAAAATTAATAATTTTTTTAAAAAG‑T‑AAt                                                                                            >  1:1557616/3‑128 (MQ=255)
                                          aaattaattTTAAATTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACt                                                                                         <  1:1925017/127‑1 (MQ=255)
                                          aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTA‑AATGAAAAT‑TAATTTTTTGGTAATTTTTTGTAAAATATTAAAAAAAAAAATAAACACAAAAAAATTTTTAAATa‑t‑aataa                                                                                          >  2:2351043/2‑127 (MQ=255)
                                           aattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATTAATTTAAATAAAATTTTTTGTTAAGTTTTGGAGTATGTAAGTATAAAAATATAATTGAAAAATTAATTTTATAAG‑A‑AATa                                                                                           >  2:1536921/1‑128 (MQ=255)
                                           aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTTTATATTTTTATTAAAAAATAGAAAGTAAAAAATATTGTTAAaat‑a‑aataa                                                                                          >  1:117088/1‑127 (MQ=255)
                                           aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTTTTTGTTTGTATATTTTTATTAAAAAAATGAAAGTAAAAAAATTTGTTAAAAt‑t‑attaat                                                                                         >  1:490896/1‑126 (MQ=255)
                                            attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTATATAATGTAAATATAAATTTTAGGTATTTTGTTTTCTAAGTATCTAAAAAAATATAAAGTAAAAAATATTGTTAAAAT‑T‑AATaat                                                                                         >  1:2297318/1‑126 (MQ=255)
                                            attaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTTTCTAATTATATAAAAAAATATAAATGAAAAAATATTTTTAAAAT‑T‑AATACTaaa                                                                                      >  1:640613/1‑128 (MQ=255)
                                             ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGTAAAAATAAATTTTAGTTATTTTTTTGTATAATTAAAAAAAAAAATAAAAATGAAAAAAAATTTTTAAAAT‑T‑AATaat                                                                                         >  2:314021/1‑126 (MQ=255)
                                             ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATTAAAAAAAAAATTTTAGGATTTTTTTTTTATAAATATATAAAAAAAATAAATGTAAAAAAAATTTTTataataaaaatta                                                                                          >  2:2158745/1‑119 (MQ=255)
                                              taattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTATTTTTTTTTAAAATTATATAAAAAAATATAAAGAAAAAAATATTTTTAAAAG‑T‑AAAAATaa                                                                                       >  1:862269/1‑128 (MQ=255)
                                                  ttGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGAAAATAAAAATTTTAGGTATTTTTTTTTATAATTATAAAAAAAAAAAAAAATAAAAAAAAATTTTATAAAG‑T‑aaaaaatgagtat                                                                                  >  2:1641166/1‑117 (MQ=255)
                                                    gAAATTTTAAAAAATAG‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAattatt                                                                                <  1:2208965/128‑1 (MQ=255)
                                                     aaCTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTATA‑AAT‑GAAATATAAATTTTAGGTATTTTGTTGTCTAATTATCTAAAAAAAATAAAAGGAAAAATAATTTTTAAAAGTT‑AATA‑TAAAATTAttt                                                                               >  2:2443466/1‑128 (MQ=255)
                                                      aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAAAATAAATTTTATGTATTTTTTTGTATAATTAAATAAAAAAAAAGAAAGCAAAAAAAATTGTTAAAAT‑A‑AATAAAAAAATAAttt                                                                               >  2:198099/1‑128 (MQ=255)
                                                       cTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTTGGTATTTTGTTGTCAATGTATCTAAAAAAATAGAAAGGAAAAAATTTTGTTAAAAG‑T‑ATTACTAAAATTTTTTaa                                                                             >  1:2041376/1‑128 (MQ=255)
                                                          gTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGTAAATAAAAATTTTATTTATTTTTTTTTATAATTATATAAAAAATTATAAATGAAAAAATATTTTTAAAAT‑T‑TATAATAAAattattatatt                                                                           >  1:737907/1‑123 (MQ=255)
                                                           tttatatttttttttttttttttttttttttATAATGTAAATATAAATTTTATGTATTTTGTTTTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATCTAAt                                                                            <  1:2443353/116‑1 (MQ=255)
                                                           tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTTTTTTTTTGTTTAATTATATTAAAAAATATAATTGAAAAAATATTTTTAAAAT‑T‑AAAAATAAAATTATTTAAttt                                                                          >  1:585419/1‑126 (MQ=255)
                                                            ttttaaaaatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATg                                                                           <  2:116603/117‑1 (MQ=255)
                                                             aaaaaTAGC‑‑TTTTTTTTTTTTTTTTTTATATTGTAAATAAAAATTTTAGGTATTTTTTTGAGTAATTA‑AAAAAAAAATTAAAAAGAAAAAAAATTTTTTAAAT‑T‑TATTAAAAAAATATTTaaatgaaa                                                                       >  1:1599164/1‑122 (MQ=255)
                                                              ttaaaaaatttcttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGt‑t                                                                        <  1:1242871/116‑1 (MQ=255)
                                                                 aTAGCTTTTTTTTTTTTTTTTTTTTATAAT‑TAAAAATAAAATTTTTGTTTTTTTTTTTGTAATTATTAAAAAAAATTTAAATTAAAAAATATTTTTTAAAA‑T‑TATAATAAAATTTTTTTAttattaat                                                                     >  2:132315/1‑121 (MQ=255)
                                                                  tAGC‑TTTTTTTTTTTTTTTTTATA‑AATGAAAAAATAATTTTTAGTTTTTTTTTTTATAAATTAAATAAAAAAAT‑TAAATGAAAAAAATTTTTTAAAAT‑TAAATAATAAAATTAtttaat‑t‑taatttaa                                                                 >  2:2087778/1‑128 (MQ=255)
                                                                  atatttttttttttttttttttttATAATTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGt‑taatt                                                                    <  1:1693926/123‑1 (MQ=255)
                                                                  aaatagctttttttttttttttttATAATGTAAATATAAATTTTATGTATTTTTTTGTATATGTATATAAAAAAATATAAAGAAAAAAATATTTTTAAAAT‑T‑AAAAATAAAATTATTAAATAt‑taatt                                                                    >  1:918987/8‑128 (MQ=255)
                                                                   atattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGt‑taatta                                                                   <  2:1269048/124‑1 (MQ=255)
                                                                    tagcttttttttttttttttttATAATGTAAATATAAATTTTAGGTATTTTGTTTTCTAATTATCTAAAAAAATATAAATTAAAAAATTTTTTTAAATT‑T‑AATAATAAAATTAATTATTTt‑taattaa                                                                  >  1:1217607/5‑128 (MQ=255)
                                                                       cttttttttttttttttttttATGGGAAATAAAATTTTTTGTTTTTTTTTTTTATATTTAAATAATAAAAAAAAATGAAAAAAATTTTTTTAAATT‑T‑AATAAAAAATTTATTT‑ATTT‑TAATTaaaaat                                                              >  1:1272408/2‑126 (MQ=255)
                                                                         tttttttttttttttttAAAATATAAATAAAAATTTTATATATTTTTTTATATAAATATAAAAAAAAATAAAAATAAAAAAATATTTTAAAAAA‑T‑AA‑AAAAAAATATTTTAATTTATAATTaaaaata                                                             >  2:2239035/1‑125 (MQ=255)
                                                                          ttttttttttttttttATAATGTAAATTTAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTta                                                            <  2:393755/128‑1 (MQ=255)
                                                                           tttttttttttttttATAATGGAATTATAAATTTTAGGTATTTTTTTGTCAAATTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAAT‑T‑AATAAAAAAATTATTTAATTT‑TAATTAAAACTtaa                                                           >  1:813833/1‑128 (MQ=255)
                                                                             tttttttttttttATAATTTAAATATAAAATTTTGGTATTTTGTTTTCAAATTTAAAAAAAAAAAAAAAAATAAAAAATTTTTTTAAAAT‑T‑AATAATAAAATTATTTTTAGT‑TAATAAAAaaataaat                                                         >  2:2300779/1‑128 (MQ=255)
                                                                             tttttttttttttATAATGGAAATAAAAATTTTAGGTATTTTTTTGTATAATAATAATAAAAAAAAGAAAGAAAAAAATATTTTTAAAAT‑T‑AATAATAAAATTTTTTAATTT‑AAATAAaaaataaaat                                                         >  2:168185/1‑128 (MQ=255)
                                                                              ttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAATTATCTAAAAAAATATAAAGGAAAAAATATTGTTAAAAT‑T‑AATACTAAAATTATTTAATTT‑TATTTAAAAATtaaata                                                        >  1:1897452/1‑128 (MQ=255)
                                                                               tttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTtaaataa                                                       <  2:865201/128‑1 (MQ=255)
                                                                                    ttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACAt                                                  <  2:937271/128‑1 (MQ=255)
                                                                                      ttttATTATTGAAATATATATTTTTGGTATTTTGTTGTATAAGTATTTAAAAAAATAGAAAGGAAATAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATaa                                                <  2:1740361/128‑1 (MQ=255)
                                                                                       tttATAATTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATaaa                                               <  1:1352933/128‑1 (MQ=255)
                                                                                          ataATTTAAATATAAATTTTATGTATTTTGTTGTATAAGTATATAAAAAAATAGAAATGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAAtt                                            <  2:1478145/128‑1 (MQ=255)
                                                                                             aTGTAAATATAAATTTTATGTATTTTGTTTTATAAGTATATAAAAAAATAGAAAGTAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATtaat                                         <  1:1442195/128‑1 (MQ=255)
                                                                                                gatatatAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  1:1402248/125‑1 (MQ=255)
                                                                                                gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  2:1099999/128‑1 (MQ=255)
                                                                                                   atatAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAACCTTAATTTATACATAAAATTAATaaaatt                                   >  2:2207434/1‑126 (MQ=255)
                                                                                                    tattatttttATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATa                                  <  1:1319385/122‑1 (MQ=255)
                                                                                                    tataAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATa                                  >  1:182315/1‑128 (MQ=255)
                                                                                                      taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                                <  1:2185763/128‑1 (MQ=255)
                                                                                                       aaaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGtt                               >  1:669698/1‑128 (MQ=255)
                                                                                                        aaTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                              <  1:1763320/128‑1 (MQ=255)
                                                                                                           tttAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATaaactatttttatt                           <  1:1953816/128‑12 (MQ=255)
                                                                                                            ttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatta                          >  1:2262719/1‑128 (MQ=255)
                                                                                                              aGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaaa                        <  2:624462/128‑1 (MQ=255)
                                                                                                                  aTTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTaa                    <  1:325400/128‑1 (MQ=255)
                                                                                                                   ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  2:1401984/128‑1 (MQ=255)
                                                                                                                   ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  1:565125/128‑1 (MQ=255)
                                                                                                                   ttttGTTGTATAAGTATCTAAAAAAATAGATAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  2:1139718/128‑1 (MQ=255)
                                                                                                                    ttttttGTCTAAGTATCTAAAAAAATAGAAAGGATAAAATATTGTTAAAAG‑T‑TAAACTAAAATTATATAATGT‑TAATTAATACTTATATAAAACATTAAATTAATAATAATTGTTTATTAATCTAAtt                  <  2:697942/128‑1 (MQ=255)
                                                                                                                    tttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt                  <  2:2407558/128‑1 (MQ=255)
                                                                                                                     ttgttgTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 >  2:359414/1‑128 (MQ=255)
                                                                                                                     ttgttgTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 >  1:106552/1‑128 (MQ=255)
                                                                                                                      ttttgtATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATTT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc                <  1:100038/126‑1 (MQ=255)
                                                                                                                      tgttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc                <  1:263869/128‑1 (MQ=255)
                                                                                                                       gttttCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               <  2:1046416/128‑1 (MQ=255)
                                                                                                                        ttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt              <  2:535568/128‑1 (MQ=255)
                                                                                                                         tgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATACTTTATTAAACGAATTACGtt             >  2:730758/1‑128 (MQ=255)
                                                                                                                           tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           <  2:1216655/128‑1 (MQ=255)
                                                                                                                            cTAAGTATCTAAAAAAATAGAAAGGAAATAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa          <  1:2225902/128‑1 (MQ=255)
                                                                                                                            cTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAATTAGTTTAATAAACTAtttttattaat          <  1:2089722/128‑8 (MQ=255)
                                                                                                                             tAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAt         <  2:182584/128‑1 (MQ=255)
                                                                                                                              taGTATATAAAAAAATAGAAATGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtt        <  2:1582257/127‑1 (MQ=255)
                                                                                                                              aaGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtt        <  1:997099/128‑1 (MQ=255)
                                                                                                                                gTATCTAAAAAAATAGAAATTAAAAAATATTTTTAAAAG‑T‑AATAATAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      <  1:387661/128‑1 (MQ=255)
                                                                                                                                 tATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTTTATTATACTTATTTCGTTTGAttttt     >  1:535400/1‑128 (MQ=255)
                                                                                                                                 tATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTTTATTAAACTATTTTCGTTTGAttttt     >  2:479226/1‑128 (MQ=255)
                                                                                                                                  aTCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTa    >  2:1857763/1‑128 (MQ=255)
                                                                                                                                    |                                                                                                                                  
ATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAG‑T‑AATACTAAAATTATTTAATGT‑TAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165181‑165438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑