Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4600CA31.9% 484.1 / 45.3 355intergenic (+238/‑437)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (148/83);  new base A (35/73);  total (183/172)
Fisher's exact test for biased strand distribution p-value = 5.75e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 380 total aligned reads displayed.

TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAAT  >  CP016816/202333‑202590
                                                                                                                               |                                                                                                                                     
tttATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTc                                                                                                                                       >  2:1830039/1‑128 (MQ=255)
tttATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTc                                                                                                                                       >  2:1860660/1‑128 (MQ=255)
  tattGATTAAAGTAAAAGTAGTTAAGTTAGTGTAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTcac                                                                                                                                     <  2:2086886/128‑1 (MQ=255)
  tataGATTAAAGTAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTcaca                                                                                                                                    >  2:1097937/1‑128 (MQ=255)
    taGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACaa                                                                                                                                   <  2:1321900/128‑1 (MQ=255)
     agattttattaaaagtaGTTAAGTTAGTGTAAATAATAGTGTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACaaa                                                                                                                                  <  2:1675718/119‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTAAAAAATTCTTATAATGAAGATCCACAAAATCTATTAATATATATAAATATCTACACaaaaaa                                                                                                                              >  2:2441297/1‑128 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCATAACAAATaa                                                                                                                              >  2:542497/1‑128 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                              <  1:1245633/128‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                              <  2:20306/128‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATACTTATAAATTAGATAAACGTGATCTATTTTTTTATTTATATATCTTAACaaaaaa                                                                                                                              >  2:431368/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATAATCTTTATCTATTTTATTATTTATTAATCTTCACAAATaaa                                                                                                                             >  1:7923/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAATTTTAATTAAAATAACATAAACTAAATAATTATTATAATGTAGATAATCTTTATCTATTTATTTATATGTTTATATTCACAAATaaa                                                                                                                             >  1:2452999/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTTCACAAATaaa                                                                                                                             >  2:219332/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             <  1:1074768/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             <  1:348157/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             >  2:2301398/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             <  1:1322704/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             >  2:565947/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAAAAACATAATAAATCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATtaa                                                                                                                             <  2:716775/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAAAATAATAATAAATATAAAAAATATAATATTAATCTATTATATTATTTTATAATCTTAAAAAATaaa                                                                                                                             >  1:2371727/1‑128 (MQ=255)
          aaagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaa                                                                                                                            <  1:546162/128‑1 (MQ=255)
           aagtaaaagtaGTGATTTTAGTGTAAATAATAGAGTTAAGGGTAAATAAAATACCATAAACTTAATAATTCTTATAATGTTGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaa                                                                                                                           <  2:86189/128‑1 (MQ=255)
             gtaaaagtaGTGAAGTTCGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaa                                                                                                                         <  1:1505028/128‑1 (MQ=255)
             gtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTATTTTATATGTTTATCTTAACAAATaaaaaaa                                                                                                                         >  1:2228833/1‑128 (MQ=255)
              taaaaatcGAGAAGTTTTTGTAAATAATAGATTTCATGGTAATTAAAAATCCATAAAATTAATAATTCATATAATTTAGATCCTAGTTATCTATTTTTTTATTTGTTTAACATCACAAATaaaaaaaa                                                                                                                       <  1:1289208/128‑1 (MQ=255)
               aaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaa                                                                                                                      >  1:1897888/1‑128 (MQ=255)
                 aagtaGTGAATTTAGTTGAAATAAAAGTGTTAATGTTAATAAAAATACCATTAACTTAAAAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                    <  1:2179516/128‑1 (MQ=255)
                   gtagtGAAGTAAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaa                                                                                                                  <  1:1353894/128‑1 (MQ=255)
                    tattGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                 <  1:902970/125‑1 (MQ=255)
                    tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGGGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                 <  1:1010321/128‑1 (MQ=255)
                     agtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                <  1:1653535/128‑1 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                <  1:440271/128‑1 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATTATCTATAATTTTATATTTTTATCTTAAAAAATAaaaaaaaaaaaaaa                                                                                                                >  2:519777/1‑126 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGCTTAATTAAAATACCATAAACTTAATAATACTTAAAATGTAGATCCTCGTTCTCTATTTTTTTCTGTGTATATCTTCACTAATAAAAAAAAAACAAta                                                                                                                >  2:2310511/1‑127 (MQ=255)
                      gtGCAGTTACTGTAAATAATAGAGTTAAGGTCAATTAAAATACCATAAACTTAATAATACTTAAAATGACGATCCTCATGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                               <  2:939233/128‑1 (MQ=255)
                      gtGAAGTTATTTTAAATAATAGATTTATTGTTTATTAATATACAATAAAATTAATAAATCTTATAATCAATATCATAGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                               <  1:678837/128‑1 (MQ=255)
                       tGAATTTAGTGTAAATAATAGAGTTAAGGTTAATAAAAATACAATAAACTTAATAATTCTTATAATTTAGATCATAGAGATCTATTTTTTTATTTGTTAAACATCAAAAAAAAAAAAAAAAAAATcaa                                                                                                              >  2:2341030/1‑126 (MQ=255)
                       tGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATccc                                                                                                              <  1:1742508/128‑1 (MQ=255)
                        gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATATATTTGTTTATCTTCACAAATAAAAAAAAAACaaacacc                                                                                                             >  2:2352846/1‑123 (MQ=255)
                         aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCATCTTGATCTATATTTTTATTTATTTATATTAAAAAATAAAAAAAAAAAAAtaaaat                                                                                                            >  2:1024430/1‑123 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                           <  1:1190467/128‑1 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAAATTAATAATTATTATAATTTATATCATAAAAATATAATTATTTATTTATTAATATAAACAAAAAAAAAAAAAAAAAtaaaaaa                                                                                                           >  2:1798415/1‑122 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCAtta                                                                                                          >  2:273870/1‑127 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCAtta                                                                                                          >  2:1284528/1‑127 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAATAAATAAAAAACAAAACCCttt                                                                                                          >  2:2258780/1‑128 (MQ=255)
                            ttAGTGTAAAAAATAGAGATAAGGTTAATTAAAATACCATAAACTTAAAAATTCTTATAAAGTAGATCATCGTGATCAATATTTTTATTTGTATATCTTCACAAATAAAAAAAAAAAAAtaaaattaa                                                                                                         >  2:1159980/1‑120 (MQ=255)
                             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTATTTTTTAATATTCACAAATAaaaaaaaaaaaaaaaaaataaa                                                                                                        >  2:669925/1‑118 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTTATCTATTTTTTTATTATTATATCTTCACAAATAaaaaaaaaaaaaaaaaataaaaa                                                                                                       >  2:1199052/1‑117 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATTTATATACTAATAATCTATTTTTTTATATATATATATTAAAAAATAaaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:1452898/1‑117 (MQ=255)
                               gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAAAAAAAAAAAACaaacaaataaaaaa                                                                                                      >  2:606968/1‑116 (MQ=255)
                                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaaaaat                                                                                                     >  1:1953381/1‑122 (MQ=255)
                                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACGTTATCTATTATTTTATTTATTTATCTTCACAAATAAAAAAATAAACaaaaacataaaaaa                                                                                                      >  2:146878/1‑116 (MQ=255)
                                   aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccataaaaaattaa                                                                                                  >  1:2044010/1‑116 (MQ=255)
                                     ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑Ttaaaaaataaaa                                                                                             >  1:2248177/1‑128 (MQ=255)
                                         taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAATAAAAAAACAACAATCCCC‑‑TTAAAAATTaataaaaa                                                                                         >  2:766982/1‑128 (MQ=255)
                                            agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaa                                                                                      >  2:2428433/1‑128 (MQ=255)
                                              ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACAC‑‑‑ATAAAAAATtaaaaaaaaaaaaa                                                                                   >  1:1844153/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                   >  2:2217290/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                   >  2:2146318/1‑128 (MQ=255)
                                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                  >  1:2091427/1‑128 (MQ=255)
                                                aaGGTTAAATAAAATACCATAAACTAAAAAAATCATATAATGTATATCCTCATGATCAAATATTTAAAATGATTATCATAACAAATAAAAAAAAAAAAAAAACC‑‑AAAAAAAATaaaaaaaaaaaaaaa                                                                                  >  2:1406122/1‑128 (MQ=255)
                                                  tgTTAATTAAAATTAAATAAAATTAATAAATCTTTTAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAATTAAAAAAAAAAAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                <  2:1894497/127‑1 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATAATCACAAATAAAAAAAAAAAAATCAAATT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                               >  2:1137475/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaa                                                                                >  2:490589/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATAACC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                 >  2:1923518/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAAAACCTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                 >  1:259798/1‑128 (MQ=255)
                                                   gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTATATTTACAAAATAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                               <  1:2034919/128‑1 (MQ=255)
                                                     taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                            >  1:598537/1‑128 (MQ=255)
                                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTATTATATTTTTTTATCTTCAAAAATAAAAAAAAAAAAAT‑‑AAAATAAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                           >  1:2423883/1‑127 (MQ=255)
                                                        ttaaAATAACAAAAAATTAAAAATTATTATAATTTATATACTCTTTATATATTTTTTTATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaac                                                                          <  1:2058102/128‑3 (MQ=255)
                                                         taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                         >  2:1993863/1‑125 (MQ=255)
                                                            aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                      >  2:1357437/1‑128 (MQ=255)
                                                            aaTACCATAAACTTAATAATTCTTATAATGTAAATACTCTTGATCAATTTTTTTATTTGTTTATCATCACAAATAAAAAAAAAAAAAAAAAC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAAATaaaa                                                                      >  2:196257/1‑128 (MQ=255)
                                                              aacaaTAAAATTAATAATTATTAAAATTTATATCCTAGTGATCTATTTTTTTATTTGTTTATATTAAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                   <  1:1390544/124‑1 (MQ=255)
                                                              aaacaaaaaaataataaTTATTATAAATTATATACACTTGTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCCATT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                    <  1:1527878/117‑1 (MQ=255)
                                                                   tAAAATTAATAATTTTTAAAATTTTTAAACTCTTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                               <  2:575494/128‑1 (MQ=255)
                                                                            taatTATTATAATTTAGATACTCGTGATATATTTTTTTATTTGTTTATATTTACAAAAAAAAAAAAAACAATCACCATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                       <  1:2218186/128‑1 (MQ=255)
                                                                                             atccatgTGATATATTTTTTTATTTGTTTAACATCAAAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                     <  1:2307846/122‑1 (MQ=255)
                                                                                             ataatcttGATATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                       <  1:1138339/121‑1 (MQ=255)
                                                                                              tcatgtttttttATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCC‑‑AATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                    <  2:2043904/117‑1 (MQ=255)
                                                                                              tcatgttGATCTATTTTTTTATATTTATACTTAAAAAATAAAAAAAAAAAAATACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACca                                   <  1:1620660/122‑1 (MQ=255)
                                                                                              tacacgttataaaTTTTTTTATTTTTTATTTTTAACAAAAAAAAAAAAAAAAATACCC‑‑‑AAAAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                   <  2:1224361/116‑1 (MQ=255)
                                                                                              tCCTCGTGATCTTTTTTTTTATTTTTTTATCATAAAAAATAAAAAAAAAACAAACCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                    <  1:2009425/128‑1 (MQ=255)
                                                                                                  tttgttatATTTTTTTAATTTTTTAAAATAAAAAAAAAAAAAAAAAAAAAACCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                  <  1:1275388/121‑1 (MQ=255)
                                                                                                  agttatttATTTTTTTTTTTTTTTATATTAAAAAAAAAAATAAAAAAAATAACTTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAGTTCCCTATTATACca                                   <  1:2341030/121‑1 (MQ=255)
                                                                                                   gTGATATATTTTTTTATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                               <  1:301041/128‑1 (MQ=255)
                                                                                                       aatttttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTCTTAAAATTCCCTATTATACCACattttaaa                          <  1:694673/124‑3 (MQ=255)
                                                                                                          atttttttatttttttATATTAAAAAAAAAAAAAAAAAAAATACAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                        <  1:178845/128‑1 (MQ=255)
                                                                                                            ttttttttttttttATTTTTAAAAAAAAAAAAAAAAAAAAACC‑‑AATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                      <  2:2389801/128‑1 (MQ=255)
                                                                                                             ttttttttttttTATATTAAAATAAAAAAAAAAAAAAATCAACTTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                      <  1:2290523/128‑1 (MQ=255)
                                                                                                             tttttATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                     <  2:2371955/128‑1 (MQ=255)
                                                                                                               tttATTTTTTTATAATAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                  <  1:1965142/128‑1 (MQ=255)
                                                                                                                   ttttttTATATTAAAAAAAAAAAAAAAAAAAATCCAC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg               <  1:834938/128‑1 (MQ=255)
                                                                                                                   tttGTTTATCTTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa               <  1:661993/128‑2 (MQ=255)
                                                                                                                      gTTTATATTCTCAAAAAAAAAAAAAAAAATCACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa              <  1:1993863/128‑1 (MQ=255)
                                                                                                                       tttATATTAAAAAATAAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt          <  1:1449226/128‑1 (MQ=255)
                                                                                                                         tATCTTCACAAATAAAAAAAAAAAAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAATAATTTATAAAAATTACAAATAATAACACTTTTAATTATTAAAATatattatta         >  2:1587431/1‑120 (MQ=255)
                                                                                                                          aTCTTAAAAAATAAAAAAAAAAAAATTACC‑‑TAAAAAATTTAAAAAAAAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa        <  1:1855217/128‑1 (MQ=255)
                                                                                                                              tCACAAATAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAATAAAAACAAAATCTATTAATTAAAATTACATATTAAACAAAATTTTATTTTTAAATAATGTTATTAAaataat  >  1:2076379/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                                     
TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAAT  >  CP016816/202333‑202590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: