BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,485	0	T	.	74.1%	224.8 / 284.1	218	intergenic (+263/‑412)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (10/38); new base . (61/76); total (85/133)
Fisher's exact test for biased strand distribution p-value = 3.51e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.94e-01

Only 100 of 247 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202359‑202604

 tttAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                        <  1:230826/127‑2 (MQ=255)

 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATCCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTA‑TCTTCACAAATATAAAAAAAAAAATCACCtat                                                                                                                        >  2:2429263/1‑126 (MQ=255)

 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATACCAtta                                                                                                                        >  2:606503/1‑127 (MQ=255)

 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCATCACAAATAAATAAAAAACAAAACCCttt                                                                                                                        >  2:2258780/1‑128 (MQ=255)

 gTTAGTGAAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                        <  1:221958/128‑2 (MQ=255)

   tatagtAAATAATATAGTTAAGGTTAAATAAAATAACATAAACTTAATAATTCATAAAATTTATATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCttaaa                                                                                                                      <  1:1477506/124‑4 (MQ=255)

     gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCttaaaaa                                                                                                                    >  1:2087484/1‑123 (MQ=255)

      tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCACttaaaaat                                                                                                                   >  1:1953381/1‑122 (MQ=255)

          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAACCCCttaaaaattaaa                                                                                                               >  2:1278073/1‑118 (MQ=255)

            taataGAGTTAAGGTTAAATAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑ttaaaaatt‑aaaaa                                                                                                          >  2:114980/1‑128 (MQ=255)

             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑aaaaaaa                                                                                                        >  1:2047461/1‑128 (MQ=255)

             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCC‑‑ATtaaaaatt‑aaaaaa                                                                                                         >  2:1926634/1‑128 (MQ=255)

               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATT‑aaaaaaaa                                                                                                       >  2:510956/1‑128 (MQ=255)

               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaa                                                                                                      >  1:261070/1‑128 (MQ=255)

                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAATAAAAAAAAAAAAAATCACATT‑‑AAAAAT‑aaaaaaaaa                                                                                                      >  2:886135/1‑128 (MQ=255)

                 gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATAGTGATCTATATTTTTATTTGTTTA‑TATTCACAAATAAAAAAAAAAAAAATCACATAaaaaaaaa‑aaaaaaaa                                                                                                       >  1:1260139/1‑128 (MQ=255)

                  agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAAAT‑aaaaaaaaaaa                                                                                                    >  2:1029659/1‑128 (MQ=255)

                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTA‑TCTTAACAAATAAAAAAAAAAAAAATACC‑ATAAAAAAAT‑aaaaaaaaaaa                                                                                                    >  2:1884077/1‑128 (MQ=255)

                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaa                                                                                                  >  2:2422649/1‑128 (MQ=255)

                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaa                                                                                                 >  2:2237188/1‑128 (MQ=255)

                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTA‑TCTTCACAAATAAAAAAAAAAAAATCCC‑‑‑ATAAAAAAT‑taaaaaaaaaaaaaa                                                                                                >  1:2062336/1‑128 (MQ=255)

                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCACC‑‑‑TAAAAAAT‑taaaaaaaacaaaaaa                                                                                               >  2:1851660/1‑128 (MQ=255)

                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaa                                                                                                >  1:2091427/1‑128 (MQ=255)

                      aaGGTTAATTAAAATACAATAAACTTAAAAATTCTTATAATGTAGATCATCGAGATCTATTTTATTATTAGTATA‑TCTTAACAAATAAAAAAAAAACAAAAAC‑‑‑ATAAAAAAT‑aaaaaaaaaaaaaaaa                                                                                               >  2:697578/1‑128 (MQ=255)

                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                               >  2:2464906/1‑128 (MQ=255)

                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTA‑TCTTAACAAATAAAAAAAAAACAATACCC‑‑‑TAAAAAAT‑taaaaaaaaaaaaaaaaa                                                                                             >  2:2194709/1‑128 (MQ=255)

                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                              >  2:566676/1‑128 (MQ=255)

                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTA‑TCTTCACAAATAAAAAAAAAACAAACAACATaaaaaaaaa‑aaaaaaaaaaaaaaa                                                                                                >  2:1348800/1‑128 (MQ=255)

                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTTTTTA‑TATTCACAAATAAAAAAAAAAAAAACAC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                              >  2:1197551/1‑128 (MQ=255)

                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                             >  2:230370/1‑128 (MQ=255)

                         gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTA‑TATTTACAAAATAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:2034919/128‑1 (MQ=255)

                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTTGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATAACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  1:2368260/1‑128 (MQ=255)

                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:598537/1‑128 (MQ=255)

                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAACACC‑‑‑TAAAAAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2313971/1‑128 (MQ=255)

                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCATCACAAATAAAAAAAAAAAAA‑‑AAAAAATAAAAATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:1457109/1‑128 (MQ=255)

                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAATAAAAAAAAAAAAA‑‑AACAATTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:2406922/1‑124 (MQ=255)

                                 aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:1863758/1‑123 (MQ=255)

                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                    >  2:2105704/1‑122 (MQ=255)

                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:1266080/1‑128 (MQ=255)

                                    taaaaTAAAATTAAAAATTATTATAATTTATATCATATTTATCTATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAA‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                    <  1:2019300/124‑1 (MQ=255)

                                    aacaaTAAAATTAATAATTATTAAAATTTATATCCTAGTGATCTATTTTTTTATTTGTTTA‑TATTAAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  1:1390544/124‑1 (MQ=255)

                                    aaacaaaaaaataataaTTATTATAAATTATATACACTTGTTATATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAAACCCATT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                  <  1:1527878/117‑1 (MQ=255)

                                           aaCTTAAAAAATATTATAATTTAAATAATATTTATATATTTTTTTATTTTTTTA‑TATTTAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                           <  1:2454398/128‑1 (MQ=255)

                                            aattAATAATTATTAAAATTTATATACTAGTTATCTATTTTTTTATTTTTTTT‑TTTTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:1442305/126‑1 (MQ=255)

                                            aaatataaatTTTTATAATTTATAAAATCGTTTTTTATTTTTTTTTTTTTTTA‑TATTTAAAAATAAAAAAAAAAAAAACCCC‑TTAAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                           <  2:1917994/121‑1 (MQ=255)

                                             attAATTATTAATATAATGTTTATTATCGTGTAATATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:67230/127‑1 (MQ=255)

                                             attAATAATTAATATAATTTATATCATAGTTATATATTTTTTTATTTTTTTA‑TATTCAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                         <  1:151982/127‑1 (MQ=255)

                                             aataaaaaattttATAAATTAGATACTCTTGATATATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAAACCC‑CTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:34526/117‑1 (MQ=255)

                                               taataaTTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCGT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTTAaaaccaagagaatgtg                                                                      >  2:2076971/1‑119 (MQ=255)

                                                    attataaaaaTTTATATCCTCTTGATTTATTTTTTTATTTTTTAA‑TCAAAAAAAAAAAAAAAAAAACAAATCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                 <  2:437491/120‑1 (MQ=255)

                                                      tattATAATTTATATAATCGTTTTTTATTTTTTTTTTTTTTTT‑TTTTTAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                               <  1:1926634/126‑1 (MQ=255)

                                                        ttATAATTTTGATCCTCGTTTTGTATTTTTTTATTTTTTTA‑TATTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAtt                                                              <  1:1967878/128‑1 (MQ=255)

                                                                   atactcgttttttATTTTTTTTTTTTTTTA‑ATTTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  2:238938/116‑1 (MQ=255)

                                                                    tcatgttGATCTATTTTTTTATATTTATA‑‑CTTAAAAAATAAAAAAAAAAAAATACCC‑‑ATAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACca                                                 <  1:1620660/122‑1 (MQ=255)

                                                                    tacacgttataaaTTTTTTTATTTTTTAT‑TTTTAACAAAAAAAAAAAAAAAAATACCC‑‑‑AAAAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:1224361/116‑1 (MQ=255)

                                                                      ctatttatatatttttttattttttTA‑AATTAAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:1199052/119‑1 (MQ=255)

                                                                      aacGTTATCTATTTTTTTATTTGTTTA‑ACTTCA‑AAAAAAAAAAAAAACAAACCC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                               <  1:1852550/126‑1 (MQ=255)

                                                                       tatttttatATTTTTTTTTTTTTTTT‑TATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  1:461479/120‑1 (MQ=255)

                                                                       accttttcaatttttttatttttttA‑TAATAAAAAAAAAAAAAAAAAAAAACACCATAAAAATTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  1:1830039/119‑1 (MQ=255)

                                                                       acGTGATATAATTTTTTAATTTTTAA‑ATTTCAAAAAAAAAAAAAAAACAATCCCCGTATAAAAAAA‑AAAAAAAAAAAAAAAAACAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTAATATACca                                                 <  1:2184581/127‑1 (MQ=255)

                                                                         tttatatatttttttattttttTA‑TAATAAAAAAAAAAAAAAAAACAATCCAC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:1158771/122‑1 (MQ=255)

                                                                         gTGATTTAATTTTTTATTTTTTTA‑TATTAAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:1628364/128‑1 (MQ=255)

                                                                         gTGATATATTTTTTTATTTTTTTA‑AATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:301041/128‑1 (MQ=255)

                                                                         ctgaataaTTTTTTTTTTTTTTTT‑TATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:1705331/121‑1 (MQ=255)

                                                                          ttttCTATTTTTTTATTTTTTTA‑TCTTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:2241146/125‑1 (MQ=255)

                                                                           gATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATACAATATAATACAACatttta                                          >  1:1286178/1‑128 (MQ=255)

                                                                            tttatttttttttttttttTATTATTAATAATTAAAAAAAAAAAAATACC‑‑ATAAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCAATTTCTTAAAATTCACTATTATACCACatttt                                           <  2:2350689/123‑1 (MQ=255)

                                                                            taattttttttttttttttTA‑TATTAAAAAAAAAAAAAAAAAAAAAAACCAATTAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:389679/123‑1 (MQ=255)

                                                                                atttttttatttttttA‑TATTAAAAAAAAAAAAAAAAAAAATACAC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:178845/128‑1 (MQ=255)

                                                                                 tttttttattttttta‑TATAAAAAAAAAAAAAAAAAAAAAACCAC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  2:2007418/128‑1 (MQ=255)

                                                                                  ttttttttttttttA‑TTTTAAAATAAAAAAAAAAAAAAATACACTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  2:952092/128‑1 (MQ=255)

                                                                                  ttttttttttttttA‑TATTAAAAAAAAAAAAAATAAAAATATCCTTAAATATTAA‑AAAAAAAAAAAAAAAAAAAATCTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:2441297/128‑1 (MQ=255)

                                                                                   ttttttttttttTA‑TATTAAAATAAAAAAAAAAAAAAATCAAC‑TTAAAAATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:2290523/128‑1 (MQ=255)

                                                                                   tttttATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:2371955/128‑1 (MQ=255)

                                                                                    ttttATTTGTTTA‑AATTAAAAAAAAAAAAAAAAACAATACCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  1:1377339/128‑1 (MQ=255)

                                                                                     tttATTTTTTTA‑TATTTACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  2:1978755/128‑1 (MQ=255)

                                                                                      ttATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTATTAAAATTCCCTTTTTTACCACATTTTTTTTTTAAAATaa                              >  2:1309830/1‑128 (MQ=255)

                                                                                         tttttttt‑TATTAACAAATAAAAAAAAAACAAACCC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:540906/128‑1 (MQ=255)

                                                                                         ttttttTA‑TATTAAAAAAAAAAAAAAAAAAAATCCAC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:834938/128‑1 (MQ=255)

                                                                                         tttGTTTA‑TCTTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa                             <  1:661993/128‑2 (MQ=255)

                                                                                          tattttA‑TATTTAAAAAAAAAAAAAAAAAAAATCCCATTT‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                             <  1:1176943/125‑1 (MQ=255)

                                                                                            gTTTA‑TATTCTCAAAAAAAAAAAAAAAAATCACATTAAAAATTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                            <  1:1993863/128‑1 (MQ=255)

                                                                                             gtttatttaaaaaaaTAAAAAAAAAA‑AATACCGATAAAAAATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                           <  2:2179945/116‑1 (MQ=255)

                                                                                              ttttttttaaaaaaTAAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:2041907/117‑1 (MQ=255)

                                                                                              tttataataaaaaaaaaaaaaaaaaaaATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:1653555/117‑1 (MQ=255)

                                                                                               ttaattaaaaaaaTAAAAAAAAAA‑AATAACAA‑TTAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:1633571/118‑1 (MQ=255)

                                                                                                 ttatttaaaaaaaaaaaaaaaaaaaaTCCCTTTT‑‑AAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:287485/120‑1 (MQ=255)

                                                                                                   aaaaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:2137336/122‑1 (MQ=255)

                                                                                                    ataacaAAAAAAAAAAAAAAAATAACC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatatta                   <  2:153456/125‑7 (MQ=255)

                                                                                                    ataaaaaaaaaaaaaaaaaaaATCAC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:2336635/123‑1 (MQ=255)

                                                                                                     taaaaaaTTAAAAAAAAAAAAAACCCA‑‑TAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:1751336/124‑1 (MQ=255)

                                                                                                     tCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATCTATTAATTAAAATTACATATTAAACAAAATTTTATTTTTAAATAATGTTATTAAaataat                >  1:2076379/1‑128 (MQ=255)

                                                                                                      aaaaaaaaaaaaaaaaaaaATACCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                  <  1:10646/125‑1 (MQ=255)

                                                                                                      aaaaaaTAAAAAAAAAAAAAT‑CACATTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                  <  1:1299985/125‑1 (MQ=255)

                                                                                                         aaaaaaaaaaaaaaaaATCCCCTT‑‑‑AAAAAT‑‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  2:1897953/128‑1 (MQ=255)

                                                                                                           aTAAAAAAAAAACAATCCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACACAATTAATAAAAATACAATATTAAAACAAAATTTATTTTTAAAATAATATATTAACAAAatata             >  1:2252284/1‑128 (MQ=255)

                                                                                                               aaaaaaaaaaAT‑ACCATTAAAAATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:1130684/128‑1 (MQ=255)

                                                                                                               aaaaaaaaCAATCCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAGCTGGTTCTTAAAATTCCGTTTTATACCCAAATTTATTTTTAAATTAATATATTGAAAAaataaataagta       >  2:812658/1‑124 (MQ=255)

                                                                                                                 aaaaaaCAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAACCAACAGGTATTTGTAAAAATTCCAGTGTATACCGCATTTTTTTTTTTATATAAGATTTTGTATTAatatatattaaa      >  1:288791/1‑124 (MQ=255)

                                                                                                                   aaaaCAATCCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTAAATTAAATAAAAATAAATAATATACAAAATTTTATTTTTAAAATAAAATATTTAAATAATAAATATATaaa     >  1:554015/1‑127 (MQ=255)

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202359‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`