Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.52.9% 118.2 / inf 217intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (19/63);  new base . (46/46);  total (84/133)
Fisher's exact test for biased strand distribution p-value = 2.98e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.02e-02

Only 100 of 247 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612
                                                                                                                                 |                                                                                                                              
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCAtta                                                                                                                               >  2:273870/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCACtta                                                                                                                               >  1:225902/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATACCAtta                                                                                                                               >  2:606503/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAACCCAtta                                                                                                                               >  2:1284528/1‑127 (MQ=255)
   tatagtAAATAATATAGTTAAGGTTAAATAAAATAACATAAACTTAATAATTCATAAAATTTATATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaa                                                                                                                             <  1:1477506/124‑4 (MQ=255)
   tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTATTTTATTTGTAT‑ATCTTCACAAAT‑AAAAAAAAAACAATACACttaaa                                                                                                                             >  1:280997/1‑125 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑Ttaaaaaataaaa                                                                                                                   >  1:2248177/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATAACC‑‑ttaaaaattaaaaa                                                                                                                  >  1:1846702/1‑128 (MQ=255)
            taataGAGTTAAGGTTAAATAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTA‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ttaaaaattaaaaa                                                                                                                  >  2:114980/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATtaaaaattaaaaaa                                                                                                                 >  2:1926634/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAATtaaaaattaaaaaa                                                                                                                 >  1:1897953/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAATCAAC‑‑‑TAAAAAATtaaaaaaaa                                                                                                              >  1:2316815/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaa                                                                                                               >  1:2043904/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaa                                                                                                               >  2:510956/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAAATCACATT‑‑AAAAATaaaaaaaaa                                                                                                              >  2:886135/1‑128 (MQ=255)
                 gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATAGTGATCTATATTTTTATTTGTTT‑ATATTCACAAAT‑AAAAAAAAAAAAAATCACATAaaaaaaaaaaaaaaaa                                                                                                               >  1:1260139/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                          >  2:2422649/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                         >  2:2217290/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaa                                                                                                         >  2:2237188/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAAAAATtaaaaaaaacaaaaaa                                                                                                       >  2:1851660/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                        >  1:244963/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                        >  1:2102905/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                        >  2:235560/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTG‑TT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                       >  1:1977119/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTATTTATTTTTTT‑ATATTCAAAAAT‑AAAAAAAAAAAAAACCAATT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                       >  2:1126614/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACAATAAACTTAAAAATTCTTATAATGTAGATCATCGAGATCTATTTTATTATTAGTAT‑ATCTTAACAAAT‑AAAAAAAAAACAAAAAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaa                                                                                                       >  2:697578/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAACAATAACC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                       >  2:1923518/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                      >  2:566676/1‑128 (MQ=255)
                        ggTTAATTAAAATA‑CATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAAACCTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:259798/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:230370/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2313971/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:1886191/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTTTTT‑ATCTTCACAAAT‑‑AAAAAAAAACAATCAC‑‑ATAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:1201193/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTTGTTT‑ATCTTAACAAAT‑AAAAAAAAAAAAA‑‑ACAAATAAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:539248/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:245718/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCATCACAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:1457109/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTATTATATTTTTTT‑ATCTTCAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATAAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2423883/1‑127 (MQ=255)
                              ttaaAATAACAAAAAATTAAAAATTATTATAATTTATATACTCTTTATATATTTTTTTATTTTTTT‑AAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaac                                                                                                <  1:2058102/128‑3 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:1357437/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:1266080/1‑128 (MQ=255)
                                   aaacaaTAAAATTAAAAAATATTATAATTTATATCATCGTTATATATTTTTTTATTTTTTT‑AAATTAACAAAA‑AAAAAAAAAAAAAACCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                           <  1:2141488/123‑1 (MQ=255)
                                    aacaaTAAAATTAATAATTATTAAAATTTATATCCTAGTGATCTATTTTTTTATTTGTTT‑ATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  1:1390544/124‑1 (MQ=255)
                                    aaacaaaaaaataataaTTATTATAAATTATATACACTTGTTATATTTTTTTATTTTTTT‑ATATTAAAAAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                          <  1:1527878/117‑1 (MQ=255)
                                            aattAATAATTATTAAAATTTATATACTAGTTATCTATTTTTTTATTTTTTT‑TTTTTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:1442305/126‑1 (MQ=255)
                                             attAATAATTAATATAATTTATATCATAGTTATATATTTTTTTATTTTTTT‑ATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                 <  1:151982/127‑1 (MQ=255)
                                                  taatTATTATAATTTATATACTAGTTATATATTTTTTTATTTTTTT‑ATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                            <  1:30832/128‑1 (MQ=255)
                                                  taatTATTATAATTTAGATACTCGTGATATATTTTTTTATTTGTTT‑ATATTTACAAAA‑AAAAAAAAAACAATCACC‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                             <  1:2218186/128‑1 (MQ=255)
                                                    attataaaaaTTTATATCCTCTTGATTTATTTTTTTATTTTTTA‑ATCAAAAAAAAA‑AAAAAAAAAACAAATCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                         <  2:437491/120‑1 (MQ=255)
                                                                   atccatgTGATATATTTTTTTATTTGTTT‑AACATCAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                           <  1:2307846/122‑1 (MQ=255)
                                                                    tcatgttGATCTATTTTTTTATATTTAT‑A‑CTTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACca                                                         <  1:1620660/122‑1 (MQ=255)
                                                                    tacacgttataaaTTTTTTTATTTTTTA‑TTTTTAACAAAA‑AAAAAAAAAAAAATACCC‑‑‑AAAAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:1224361/116‑1 (MQ=255)
                                                                    tCCTCGTGATCTTTTTTTTTATTTTTTT‑ATCATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  1:2009425/128‑1 (MQ=255)
                                                                    atctgtttttttattttatttTTTTTTT‑ATATTTATAAAT‑AAAAAAAAAAAAATCACC‑‑TTAAAAATTAAAAAAAAAAAAAAATAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  2:1830284/117‑1 (MQ=255)
                                                                     ccTCGTGATATTATTTTTTATTTTTTT‑ATAATAAAAAAT‑AAAAAAAAAAAAAT‑‑CCAATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:2032914/128‑1 (MQ=255)
                                                                     aaatttttattATTTTTTTAATTTTTT‑AAAATAAAAAAA‑AAAAAAAAAAAAAATCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  1:1689026/118‑1 (MQ=255)
                                                                      ctatttatatatttttttattttttT‑AAATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:1199052/119‑1 (MQ=255)
                                                                         tttatatatttttttattttttT‑ATAATAAAAAAA‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:1158771/122‑1 (MQ=255)
                                                                           gATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATACAATATAATACAACatttta                                                  >  1:1286178/1‑128 (MQ=255)
                                                                             attttttttttattttttt‑ttattTACAAAT‑AAAAAAAAAAAAATCCCCTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                   <  1:549640/124‑1 (MQ=255)
                                                                             aatttttttttATTT‑TTT‑ATATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTCTTAAAATTCCCTATTATACCACattttaaa                                                <  1:694673/124‑3 (MQ=255)
                                                                              ttatttttttattttttTAATAATAAAAAAT‑‑AAAAAAAAACAAAACCTTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  1:615369/127‑1 (MQ=255)
                                                                                ttttttttattttttt‑aAATTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:2187932/127‑1 (MQ=255)
                                                                                atttttttattttttt‑TTATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:2047461/128‑1 (MQ=255)
                                                                                 tttttttattttttt‑aTATAAAAAAAA‑AAAAAAAAAAAAAACCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:2007418/128‑1 (MQ=255)
                                                                                 tttttttattttttt‑aTAATCAAAAAT‑AAAAAAAAAAAAAAACCC‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:2082020/128‑1 (MQ=255)
                                                                                  tttttttttttttt‑ATTTTTAAAAAA‑AAAAAAAAAAAAAAACC‑‑AATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:2389801/128‑1 (MQ=255)
                                                                                  tttttttttttttt‑ATTTTAAAATAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:952092/128‑1 (MQ=255)
                                                                                   tttttATTTTTTT‑ATATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  2:2371955/128‑1 (MQ=255)
                                                                                   tttttATTT‑TTT‑AAATTTAAAAAA‑AAAAAAAAAAAAATACCC‑TAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttaaaaataa                                           <  1:2075725/128‑8 (MQ=255)
                                                                                    ttttATTTGTTT‑AAATTAAAAAAA‑AAAAAAAAAACAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  1:1377339/128‑1 (MQ=255)
                                                                                     tttATTTTTTT‑ATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                        <  1:1965142/128‑1 (MQ=255)
                                                                                      ttATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTATTAAAATTCCCTTTTTTACCACATTTTTTTTTTAAAATaa                                      >  2:1309830/1‑128 (MQ=255)
                                                                                       tATTTTTTT‑ATAATAACAAAT‑AAAAAAAAAAACAAACCC‑‑AAAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:2223153/128‑1 (MQ=255)
                                                                                        aTTTTTTT‑ATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:2300243/128‑1 (MQ=255)
                                                                                         ttttttT‑ATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  1:2085821/128‑1 (MQ=255)
                                                                                         ttttttT‑ATATTAAAAAAA‑AAAAAAAAAAAAATCCAC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  1:834938/128‑1 (MQ=255)
                                                                                         tttGTTT‑ATCTTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa                                     <  1:661993/128‑2 (MQ=255)
                                                                                          ttGTTT‑ATTATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  1:174935/128‑1 (MQ=255)
                                                                                          tatttt‑ATATTTAAAAAA‑AAAAAAAAAAAAAATCCCATTT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  1:1176943/125‑1 (MQ=255)
                                                                                             ttttaatttaaaaaaa‑aaaaaaaaaaaaATCAC‑‑ATAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  2:214945/116‑1 (MQ=255)
                                                                                             ttt‑ATATTAAAAAAT‑AAAAAAAAAAAAAT‑AACATTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  1:372612/128‑1 (MQ=255)
                                                                                              tttataataaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  1:1653555/117‑1 (MQ=255)
                                                                                               tttaataaaaaaaT‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  1:1783553/118‑1 (MQ=255)
                                                                                               ttaattaaaaaaaT‑AAAAAAAAAA‑AATAACAA‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  1:1633571/118‑1 (MQ=255)
                                                                                                taaattaaaaaaa‑aaaaaaaaaaaaATACCATTT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:1827791/119‑1 (MQ=255)
                                                                                                 aTCTTAAAAAAT‑AAAAAAAAAAAAATTACC‑‑TAAAAAATTTAAAAAAAAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:1855217/128‑1 (MQ=255)
                                                                                                   tattaaaaaT‑AAAAAAAAAAAAATTCAAATT‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:2090812/122‑1 (MQ=255)
                                                                                                    ttaaaaaaT‑AAAAAAAAAAAAATCCCC‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                           <  1:2406290/123‑1 (MQ=255)
                                                                                                    ataacaAAA‑AAAAAAAAAAAAATAACC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatatta                           <  2:153456/125‑7 (MQ=255)
                                                                                                      aaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  1:10646/125‑1 (MQ=255)
                                                                                                      aaaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                         <  1:235560/125‑1 (MQ=255)
                                                                                                      aaaaaaT‑AAAAAAAAAAAAAT‑CACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  1:1299985/125‑1 (MQ=255)
                                                                                                         aaaa‑aaaaaaaaaaaaATCCCCTT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                   <  2:1897953/128‑1 (MQ=255)
                                                                                                           aT‑AAAAAAAAAAAAATATAC‑TATAAAATAT‑AAAAAAAAAAAAAAAAATTACTAAAAACAAACTCTATATCTTAAAAATCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  1:295163/128‑1 (MQ=255)
                                                                                                            t‑AAAAAAAAAAAAATACCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  1:1943968/128‑1 (MQ=255)
                                                                                                                aaaaaaaaaaATCCCC‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                 <  1:445292/128‑1 (MQ=255)
                                                                                                                aaaaaaaaaaAT‑ACCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                 <  1:1130684/128‑1 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTATTTTTGTTAAAAAAGCCTTTTATACCAAATTTTTTTTTTAAATAAAAATATTTAAataaattttata                 >  2:1984553/1‑120 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAGCTGGTTCTTAAAATTCCGTTTTATACCCAAATTTATTTTTAAATTAATATATTGAAAAaataaataagta               >  2:812658/1‑124 (MQ=255)
                                                                                                                      aaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAACAATTTATTAAAATACCAAATAAACCCAAATTTATATTTTAAAAAAAAAAATTCACATAaaataaaaaaaaaatat         >  1:597448/1‑116 (MQ=255)
                                                                                                                                 |                                                                                                                              
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑