BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,895	1	.	T	50.2%	inf / inf	415	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base . (106/100); new base T (161/47); total (268/147)
Fisher's exact test for biased strand distribution p-value = 4.13e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 525 total aligned reads displayed.

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203767‑204022

ttttAA‑TTTTTTTATTAAAAAAAATAAAAAATTTTCTTTTTAAGCCAATTTTCAAAAACCCAAAGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTg                                                                                                                                        <  2:1224211/128‑1 (MQ=255)

 tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GT‑‑C‑‑TTg                                                                                                                                        >  1:1438184/1‑128 (MQ=255)

  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑t                                                                                                                                    >  1:632025/1‑128 (MQ=255)

   tAATTTTTTATAAAAAAAAAAAAAAAAATTTTTAAATTAAATCCATTTGTAAAAAAGCCATTTTTCTTGGCTTTTTATTATACTTATAAACATTACAACGCTTTAAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑Ttt‑‑‑tt                                                                                                                                   <  2:167860/128‑1 (MQ=255)

    aaTTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTAAAGCCATTTTTAAAAAATCATATTTTAATTGATTTTTATTATACTTATAAAAATTAAAACGCTTTCAAATTT‑TA‑TTTTTTT‑GG‑‑C‑‑TTG‑‑‑ttt                                                                                                                                  <  2:1881401/128‑1 (MQ=255)

         tttttATAAAAAAAAATAAAAATTTTTCATTTAAGGCCTTTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATCTACATAACCCCGCTTACAAAGTG‑AA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttt                                                                                                                             >  2:770177/1‑128 (MQ=255)

         tttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttt                                                                                                                             >  1:2003833/1‑128 (MQ=255)

         tttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttt                                                                                                                             >  1:122127/1‑128 (MQ=255)

          ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttt                                                                                                                            >  1:1830351/1‑128 (MQ=255)

           tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTTTACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttt                                                                                                                           >  1:1406738/1‑128 (MQ=255)

           tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttt                                                                                                                           >  1:1865748/1‑128 (MQ=255)

           tttAAAAAAAAAAAAAAAAATTTTTAATTTAAACCCATTTTTAAAAAATCCTATGTTCTTGGCTTTTTATTAAAATTATCAACATTACAACCCTTTAAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttt                                                                                                                           <  2:661174/128‑1 (MQ=255)

             tataAAAAAAAATAAAAATTTTTAATTTTAAGCCATATGTAAAAAAGCCTATGTTATAGGATTTTTTTTTTACTTTTTAAAATTTCAACGCTATTCAAGTG‑TT‑TTTTTTT‑GG‑‑t‑‑ttt‑‑‑tttttttttttt                                                                                                                         <  2:2237334/128‑1 (MQ=255)

              ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttt                                                                                                                        >  2:1974430/1‑128 (MQ=255)

               taAAAAAAAATAAAAATTTTTAATTTAAATCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttttttt                                                                                                                       <  1:2229359/128‑1 (MQ=255)

               taAAAAAAAAAAAAAATTTTTCAATTAAAGCCATTTGTAAAAACGCCTATTTTCTAGGCTTTTTATTATACTTATCAACAATACAAAGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttttttt                                                                                                                       <  1:2151090/128‑1 (MQ=255)

                aaaaaaaaaaaaaaATTTTTCATTTAAATCCATTTTTAAAAAAGCGTATGTTCTAGGCTTTTTTTTATACTTATCAACATTAAAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑G‑‑TTG‑‑‑ttttttttttttttt                                                                                                                      <  1:559592/128‑1 (MQ=255)

                aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTGTTTA‑GG‑‑C‑‑TTG‑‑‑gtttttttttttttt                                                                                                                      >  1:263229/1‑128 (MQ=255)

                   aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttttttttttg                                                                                                                   >  2:283623/1‑126 (MQ=255)

                   aaaaaaTAAAAATTTTTAATTTAAATCCATTTGTTAAAAAGTCTATGTTCTATTCTTTTTATTATACTTATCAACATTAAAACGCTTTAAAATTG‑TA‑TTTTTTT‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGt                                                                                                                   <  2:889191/128‑1 (MQ=255)

                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttttttt                                                                                                                  >  1:2259941/1‑125 (MQ=255)

                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGtt                                                                                                                  >  1:2291683/1‑127 (MQ=255)

                     aaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttttttta                                                                                                                 >  1:307211/1‑124 (MQ=255)

                      aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTT‑T‑aaaa                                                                                                              >  1:1187974/1‑128 (MQ=255)

                            taatTTTTTATTTAAAAAATTTTTTAAAAAATCATATTTTTTATTATTTTTTTTAATATTTTCTAAATTTCAACTCTTTAAAATTT‑TA‑TTTTTTT‑GGTTT‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATa                                                                                                           <  1:96258/127‑1 (MQ=255)

                            atatTTTTTATTTAAATCCATTTTTTAAATATCCATTTTTTTATTGTTTTTATTTTAATTAATAAAATTAAAAAGCTTTTAAATTG‑TT‑TTTTTTATGG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATaa                                                                                                          <  2:2334405/126‑1 (MQ=255)

                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATtaa                                                                                                         >  1:1135330/1‑128 (MQ=255)

                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTATTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑taaaaatta                                                                                                         >  1:1969531/1‑124 (MQ=255)

                              atTTTTTATTTAAAGAAATTTTTTAAAAATCTTATTTTTTATTGTTTTTTTTTTAATTTTAAATATTAAAAAGATTTCAAATTG‑TA‑TTTTTTA‑GG‑‑G‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATaaaa                                                                                                        <  1:125953/128‑1 (MQ=255)

                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑ATAAATaaaa                                                                                                        >  1:85811/1‑128 (MQ=255)

                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATaaaa                                                                                                        >  1:212806/1‑128 (MQ=255)

                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAATATtaatt                                                                                                       >  1:1023166/1‑126 (MQ=255)

                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑A‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATaaaa                                                                                                        >  2:2082274/1‑128 (MQ=255)

                                ttttCATTTAAAGCCATTTTTAAAAAATCCTATGTTCTATGTTTTTTATTATACTTATCAACATTAAAACTCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTa                                                                                                    <  1:46781/128‑1 (MQ=255)

                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑CT‑TTT‑‑‑TTTTTTTTTTTTTTTTAT‑aaaaaaaaaata                                                                                                      >  1:716369/1‑126 (MQ=255)

                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATaaaaat                                                                                                      >  1:2068317/1‑126 (MQ=255)

                                 ttttaattAAATTCATTTTTAAAAAATCCTATTTTTTTTGGTTTTTTTTTTAATTATCAAAATTTCAACGCTTTAAAATTT‑TT‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑Gt                                                                                                     <  1:887634/122‑1 (MQ=255)

                                 tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑taaaataaaaatt                                                                                                     >  2:2218366/1‑125 (MQ=255)

                                 tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATaaattta                                                                                                     >  1:1094118/1‑124 (MQ=255)

                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTaa                                                                                                   >  1:372237/1‑128 (MQ=255)

                                   tCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAAGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTGT‑aaaaaaaaaatata                                                                                                    >  1:1286734/1‑124 (MQ=255)

                                    aaTTTAAATCAATTTTTAAAAAATCATATTTTATTGTGTTTTTTTTTTAATTATTAAAATTAAAACTTTTTAAAATTT‑TA‑TTTTTTT‑GGT‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGa                                                                                                 <  1:1679750/127‑1 (MQ=255)

                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑ATAAATTAAA‑TTAATATTTgt                                                                                            >  2:456097/1‑127 (MQ=255)

                                          tatcatttttTAAAAAATCCTTTTTTTTAGTTTTTTTATTATAATTTTAAAAATTACAACGCTTTAAAATTT‑TA‑TTTTTTT‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGTTTTggt                                                                                           <  2:632025/122‑2 (MQ=255)

                                          aatcaaTTTGTAAAAATTCTTTTTTTATATGATTTTTATTTTAATTATAAAAAATAAAAAGATTTAAAAGTT‑TA‑TTTTTTA‑TG‑‑CTTTTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTgg                                                                                            <  1:2161571/123‑1 (MQ=255)

                                          aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑TAAAATAAAA‑TTAATATTTGGa                                                                                           >  2:1935988/1‑128 (MQ=255)

                                           agacATTTGTAAAATAGACTATTTTCTTTGTTTTTTTTTATACTTTTCAAAGTTTTAAGGTTTTTAAAGTT‑TT‑TTTTTTT‑TG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGAt                                                                                          <  2:724896/125‑1 (MQ=255)

                                            tccATTTTTAAAAAAGACTTTGTTTTATGTTTTTTATTATAATTTTCAACATTAAAACGCTTTCAAATTG‑TA‑TTTTTTT‑GG‑‑G‑‑TTGTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGAt                                                                                          <  2:2021644/127‑1 (MQ=255)

                                               atatGTAAAAAATCCTATGTTCTATGCGTTTTATCATAATTAACAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTT‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAc                                                                                      <  2:1530693/125‑1 (MQ=255)

                                               aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAATA‑ATAATAtttttttaaac                                                                                      >  1:246449/1‑120 (MQ=255)

                                                  tttAAAAAATAATATTTTTTATGCTTTTTATTATACTTATAAAAATTACAACGCTTTCAAATTT‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAAATAAAA‑GTAAGATTTGGATCAAC‑Caa                                                                                  <  1:994701/126‑1 (MQ=255)

                                                  tGTAAAAAAGACAATGTTCTATGATTTTTATTATACTAATAAACTTAAAAACTTTTAAAAATTT‑TA‑TTTTTTA‑GG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑Caaa                                                                                 <  1:198621/128‑1 (MQ=255)

                                                   gTAAAAAATCCTATTTTCTTGGTTTTTTATTAATCTTATTAAAATTAAAACGCTTTTAAATTG‑TT‑ATTTTTT‑GG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑Caaa                                                                                 <  2:2361491/128‑1 (MQ=255)

                                                   gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAGATTTGGATAAAC‑Caaa                                                                                 >  2:1146113/1‑128 (MQ=255)

                                                   gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAA‑ATAAAATTTTGATAAAC‑aaaa                                                                                 >  1:1727803/1‑128 (MQ=255)

                                                    tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAGATTTTGATAAAC‑aaaa                                                                                 >  2:1450718/1‑128 (MQ=255)

                                                    tAAAAAAGCCTATGTTCTACGCTTTTTATTATACTTATCAAAATTACAACGCTTTAAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACt                                                                              <  1:2201146/128‑1 (MQ=255)

                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATTAAA‑TTTATATTTGGGAAAAC‑CAAAAc                                                                               >  1:2387502/1‑128 (MQ=255)

                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAATATTTTGATCAAA‑CAAAACt                                                                              >  1:234567/1‑128 (MQ=255)

                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATTAAT‑GTTAGATTTGGAtatctcaaaaata                                                                              >  1:521163/1‑116 (MQ=255)

                                                          aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑AAAATTAAAA‑ATAAGATTTGGTTAAAC‑CAAAAATATATc                                                                         >  2:2267292/1‑128 (MQ=255)

                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTATTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAATATTTTATCAAC‑AAAAAatatataa                                                                        >  2:945811/1‑126 (MQ=255)

                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑GTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAT‑CTAAGATTTGGGTCAAC‑CAAAACtataga                                                                         >  1:426868/1‑126 (MQ=255)

                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑GTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAAA‑GTTAGATTTGGATAAAC‑AAAAACTttata                                                                         >  1:762586/1‑127 (MQ=255)

                                                              tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGATAAAC‑AAAAAATATTTAaaaa                                                                     >  1:292729/1‑128 (MQ=255)

                                                               aTGTTATATGATTTTTATTATAATTTTAAACATTTCAAAGCTTTAAAAGTG‑TT‑TTTTTTA‑TG‑‑G‑‑TTGTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCaaa                                                                      <  1:1926799/128‑1 (MQ=255)

                                                                tGTTTTAGGCTTTTATTTATAATTATTAAATTTTCAACTCTTTCAATTTT‑TA‑TTTTTTAGGG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCaaaaa                                                                    <  2:1306571/128‑1 (MQ=255)

                                                                 ttttattgttttttatttttatttttaAAATTACAAATTTTTAAAATTT‑TA‑TTTTTTT‑TG‑‑G‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCaaaaaat                                                                  <  1:2430519/119‑2 (MQ=255)

                                                                 gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAA‑GTATCTTTTGTATCAAA‑CAAAAATATATCaaaaaa                                                                   >  1:1548343/1‑128 (MQ=255)

                                                                 gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAGATTTGGATAAAC‑CAAAACTATATAaaaaaa                                                                   >  1:1497753/1‑128 (MQ=255)

                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAGATTTGGATCAAC‑CAAAACAATATAAAAAAAA‑tt                                                               >  2:2009107/1‑128 (MQ=255)

                                                                       tgatttttATTATAATTATAAAAATTACATAGCTTTCAAAGTG‑TT‑TTTTTTA‑TT‑‑G‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTaaaa                                                           <  2:2382986/125‑1 (MQ=255)

                                                                         cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAAATTTTGATCAAC‑CAAAACAATATAAAAAAAA‑TTaaaaa                                                          >  1:2100259/1‑128 (MQ=255)

                                                                            tttatttttattATCAACATTAAAACCCTTTCAAATTG‑TA‑TTTTTTA‑GG‑‑T‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAAta                                                     <  2:1074175/128‑1 (MQ=255)

                                                                              tattatACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTT‑AAAAATTAAA‑TTAAAATTTGGTTCAAA‑AAAAAATTTTTAAAAAAAA‑TTaaaaaaat                                                       >  1:1763283/1‑127 (MQ=255)

                                                                              tattatACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAAAATTTGGATAAAA‑AAAAAATATAAAAAAAAAA‑TTaaaaaaaaat                                                     >  1:497876/1‑126 (MQ=255)

                                                                               attttcattATCAACATTACAACGATATAAAAGAGTTT‑TTTTTTG‑GG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAAtag                                                    <  2:2107471/121‑1 (MQ=255)

                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAA‑TTAATATTTTGATAAAC‑CAAAAATATATAAAAAAAA‑TTaaaaaaaaaatt                                                   >  1:657946/1‑124 (MQ=255)

                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAATATAATATTT‑GATAAACAAAAAAAAATATAAAAAATA‑TTaaaaaaatattttt                                                 >  2:2140692/1‑121 (MQ=255)

                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGAACAAC‑CAAAACAATATCAAAAAAA‑TTAAAAAAAAtagttta                                                >  2:1837149/1‑128 (MQ=255)

                                                                                     cTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAAATTTTGATAAAC‑CAAAAATATTTAAAAAAAA‑TTAAAAAAAAtattttattt                                             >  1:203303/1‑128 (MQ=255)

                                                                                      ttATCAAAATTATATCTTTTTAAAAGTT‑TT‑TTTTTTATTG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAAtagtttagtt                                             <  2:591945/128‑1 (MQ=255)

                                                                                       tATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTTT‑AAAAATTAAA‑ATAATATTTGGTTAAAC‑CAAAAATAAATAAAAAAAA‑TTAAAAAAAAaatttttttt                                             >  2:1279523/1‑124 (MQ=255)

                                                                                       tATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTAATATTTGTATAAAC‑AAAAAATTTAAAAAAAAAA‑TTAAAAAAAAtattttattt                                             >  1:326449/1‑128 (MQ=255)

                                                                                        aTCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑TAAAAAAAAA‑TTATTATTTTGATACAC‑CAAAAAATTTTAAAAAAAATTTAAAAAAAAtatattttttt                                            >  2:2305279/1‑119 (MQ=255)

                                                                                            tatttttttattttttAAAGTT‑TATTTTTTTT‑GA‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGttt                                       <  1:157182/116‑1 (MQ=255)

                                                                                               ttACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑TTTATATTTGGATAAAC‑CAATAATATTTCAAAAAAA‑TTAAAAAAAATATTTTAGTTTTGTTTCa                                     >  1:1061755/1‑128 (MQ=255)

                                                                                                  cAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑TAAATTAAAA‑ATAAAATTTTGTTAAAC‑CAAAACTATTTCAAAAAAA‑ATAAAAAAAATAGTTTATTTTAGTTTAAAAtat                                >  2:1370817/1‑126 (MQ=255)

                                                                                                     cgtttttaatttg‑tA‑TTTTTTT‑GG‑‑G‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                             <  1:1890630/117‑1 (MQ=255)

                                                                                                        ttttAAATTT‑TA‑TTTTTTA‑TG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTTGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                          <  2:1569648/128‑1 (MQ=255)

                                                                                                         ttCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGATCAAC‑CAAAAATTTAAAAAAAAAA‑TTAAAAAAAATATATTAGTTGATTTTAAAATCTACaaat                          >  1:804721/1‑128 (MQ=255)

                                                                                                              aGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAATATTTGGATCAAC‑CAAAAATTTTTAAAAAAAA‑TTAAAAAAAAAATTTTATTTTTTTTTAAAATCTGCAtaaatat                      >  1:217436/1‑127 (MQ=255)

                                                                                                               gtg‑tA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAATATTTTGAAAAAC‑CAAAAATAAAAAAAAAAAA‑TTAAAAAAAATATTTTATTTTATTTTAAAATATGAatatattata                    >  2:175731/1‑124 (MQ=255)

                                                                                                                 tagttttttttA‑GT‑‑T‑‑ATA‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATAAAC‑CTTAACTATATAAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATTTATAGTAc                   <  2:802727/123‑1 (MQ=255)

                                                                                                                      ttttttA‑GG‑‑C‑‑TTG‑‑‑‑‑TTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCCAC‑CAAAACTATATAAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCAGCATATATAGTACAAACGaa            >  2:2058866/1‑128 (MQ=255)

                                                                                                                            a‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTATTTTTTTTAGAAAC‑AAAAAATATTAAAAAAAAA‑TAAAAAAAAATATTTTAGTTTTGTTTCAAATCGTAAAATATATAAAAAAGTAAttt         >  1:2310161/1‑128 (MQ=255)

                                                                                                                            a‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAGATTTTGATAAAC‑AAAAAAAATAAAAAAAAAA‑TTAAAAAAAATAGTTTAGTTAAGTTTAAAATCTTCAAATTTATTAAAAATGAAttt         >  2:36398/1‑128 (MQ=255)

                                                                                                                                  gtgttG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt       <  2:2120336/125‑1 (MQ=255)

                                                                                                                                       g‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAAATTTTGATAAAC‑AAAAAAAAAATAAAAAAAA‑TTAAAAAAAAAAGTTTATTTTATTTTAAAATATGAATATTAATTAAAAAAGAATTTAtaaata  >  2:52121/1‑123 (MQ=255)

                                                                                                                                       g‑‑‑TTTTTTTTTTTTTTTTGT‑AGAAATAAAA‑CTAAGATTTGGAACCAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATATTTTATTTGAGTTTCAAATCTGAATATAAACTACAAAGGAAATTATGATat  >  2:2441510/1‑127 (MQ=255)

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAC‑CAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203767‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`