Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1500A.65.8% 534.5 / inf 477intergenic (‑73/‑241)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base A (111/52);  new base . (158/155);  total (269/208)
Fisher's exact test for biased strand distribution p-value = 2.99e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.30e-01

Only 100 of 662 total aligned reads displayed.

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277
                                                                                                                               |                                                                                                                               
 aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACCCCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtat                                                                                                                                >  2:660849/1‑128 (MQ=255)
 aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtat                                                                                                                                >  1:950629/1‑128 (MQ=255)
 aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTAGTTACATACTATTCAAAACATATATAACATACATACATtat                                                                                                                                >  1:1691193/1‑128 (MQ=255)
    aGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatt                                                                                                                             >  2:1869860/1‑127 (MQ=255)
      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTATTTCAATTTACACACACCTTATGAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATAAATtatatata                                                                                                                           >  2:1511023/1‑128 (MQ=255)
       tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCATtatatatat                                                                                                                          >  1:447529/1‑128 (MQ=255)
           atatataataaaaattaaattAAAATTTTAATTAACTTTTTAATTTTAAACACCACTTATTAAAAAATAAAATAATTTTTAAATAATATTAAAAACATATATAACATAAATTCATtatatatatatat                                                                                                                      <  2:837881/117‑1 (MQ=255)
           ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatat                                                                                                                      >  2:317048/1‑128 (MQ=255)
           ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatat                                                                                                                      >  1:2166044/1‑128 (MQ=255)
           ataaCTAATCAAAATGAACTTAAAATTGAAATTAAATTTTTCTTTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatat                                                                                                                      <  2:2374358/128‑1 (MQ=255)
            taaCAAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACTATTCAAAACATATATAACATACATTCATtatatatatatata                                                                                                                     <  1:1007440/128‑1 (MQ=255)
             aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatat                                                                                                                    <  1:369731/128‑1 (MQ=255)
             aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACAAATATAACATACATTCATtatatatatatatat                                                                                                                    >  1:902956/1‑128 (MQ=255)
              aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGAATCAATATATATATAACATACATTCTTttgttatatatattta                                                                                                                   >  2:1288913/1‑128 (MQ=255)
                tAATCCAAATGATCATAAAATTGTAATTAACTTTATCTATTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCATtatatatatatatatata                                                                                                                 <  1:2311060/128‑1 (MQ=255)
                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatata                                                                                                                 >  2:253270/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatata                                                                                                               >  2:2451910/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatata                                                                                                               >  2:2394267/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatata                                                                                                               >  2:2315732/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatata                                                                                                               >  2:280190/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatataaatata                                                                                                               >  1:327764/1‑128 (MQ=255)
                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCATtatatatataaatatatata                                                                                                               >  1:1192250/1‑128 (MQ=255)
                  aTCAAAATTAATTTAAATATATAATTAAATTTTTATTTTTTAAAACTCATAATTAAAAAATAAATTAATTTTTACATACGATTCAATACATATATATCATAAATTCATtatatatatatatatatata                                                                                                               <  2:1083859/128‑1 (MQ=255)
                   tCCAAATTAACTTAAAATTGTAATTAACTTTTTTATTTTAAACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCATtatatatatatatatatatat                                                                                                              <  1:1751240/128‑1 (MQ=255)
                    ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatata                                                                                                             >  2:507491/1‑128 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCATtatttatatatatatatatatataat                                                                                                         >  1:1311216/1‑126 (MQ=255)
                         tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataaag                                                                                                        >  2:166252/1‑125 (MQ=255)
                         tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatataatgca                                                                                                        >  1:749039/1‑123 (MQ=255)
                         agAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATAAAAAAATAAAATACATGTTACATACGAATCAAAACATATAAAACATACATTCATtaaatatatatatatctatatataatt                                                                                                        >  2:423285/2‑125 (MQ=255)
                          gAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAAt                                                                                                       >  1:1498170/1‑128 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataatgcaa                                                                                                     >  1:700635/1‑122 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATaaata                                                                                                     >  1:2344256/1‑125 (MQ=255)
                             cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataatgaaat                                                                                                    >  2:193354/1‑121 (MQ=255)
                             cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataatactat                                                                                                    >  1:1375721/1‑121 (MQ=255)
                              ttAAAATTGTAATTAACATATTCATTTTAAACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAata                                                                                                 <  1:617147/128‑1 (MQ=255)
                                aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataatgaaatatc                                                                                                 >  2:2350070/1‑118 (MQ=255)
                                aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatatatatataaatcaatatc                                                                                                 >  1:1818259/1‑118 (MQ=255)
                                aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAAATCAATATg                                                                                               >  1:1784721/1‑128 (MQ=255)
                                aaaaTTGTAATAAACTATTTCATTTTACACACCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATg                                                                                               <  2:1203120/128‑1 (MQ=255)
                                   aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTaa                                                                                            <  1:831898/128‑1 (MQ=255)
                                    atGTAATTAACTTTTTCATTTTACACAACCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATg                                                                                         <  1:2422707/127‑1 (MQ=255)
                                     tGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATtatatatatatatatataatgcaatatgt                                                                                                      <  2:474504/118‑12 (MQ=255)
                                     tGTAATTAACTTTTTCATTTTACACACCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGa                                                                                        <  2:141387/128‑1 (MQ=255)
                                      gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATTCAATATGTAAAtt                                                                                         >  1:1431374/1‑127 (MQ=255)
                                       tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGa                                                                                        >  1:1257121/1‑128 (MQ=255)
                                       tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATTCAATATGTAAATGaaa                                                                                      >  1:794332/1‑128 (MQ=255)
                                           tAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAAATAAATATGTAAAAGAAAat                                                                                    >  1:661229/1‑128 (MQ=255)
                                             aCTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTAGATAGGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAatat                                                                                  <  2:2220287/128‑1 (MQ=255)
                                              cTTTTTAATTTTAAACACAACTTATAAAAAAATAAAATACTTGTTACATAAGATTCAAAAAAAATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATg                                                                                 <  1:1881551/128‑1 (MQ=255)
                                               tttttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGAAATATGTAAATAAAAatattg                                                                                >  2:1225892/1‑126 (MQ=255)
                                                  ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAAAGCAATATGTAAATGAAAATATgtt                                                                               >  2:590667/1‑126 (MQ=255)
                                                  ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAAAGCAATATGTAAATTAAAATATGTtat                                                                             >  1:227626/1‑128 (MQ=255)
                                                      ttttACACACCCCTTATTAAATAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                         <  1:1932959/128‑1 (MQ=255)
                                                        ttaatatcaaattattaAATAATAAAATTCTTTTTAAATATTATTATTAATATATATAATATAGATATATTTTTTATATATAAATATATATATATATTGCAATATGTAAATGAAAATATGGTataata                                                                         <  1:1454479/117‑1 (MQ=255)
                                                          acacacCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAcc                                                                   <  1:2216746/128‑1 (MQ=255)
                                                               ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATATCAACCGtt                                                                >  1:540794/1‑128 (MQ=255)
                                                                aataattataaaaaTATAAAATTTTTTAGATATTATTCTAAAAATATATAATATATATTCTTTATATATATATATATATATATATAATGCAATATGTATATGAAAATATGGTATAATAGCAACCGttt                                                               <  2:1829010/119‑1 (MQ=255)
                                                                    tattatAAAAAAAAATAATTTTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                           <  2:1153596/128‑1 (MQ=255)
                                                                    tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCATCCTTTTATaa                                                           >  2:1786913/1‑128 (MQ=255)
                                                                     attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                          <  2:364028/128‑1 (MQ=255)
                                                                      ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAATAAAAAATATTGTATAATAGAAACCTTTTATaaat                                                         >  2:1039599/1‑127 (MQ=255)
                                                                         aaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATATAAAAAAAAATATGATATAATATCAACATATTATAAATTaa                                                      >  1:1043406/1‑128 (MQ=255)
                                                                          aaaataaaatACTTTTTACATAATATTCAAAAAATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                     <  1:278792/128‑1 (MQ=255)
                                                                          aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATAATTA‑‑‑AATATTTATATAAATATATGTTATAATAGAAACAGTTTATAAATTaaaaa                                                   >  2:716709/1‑128 (MQ=255)
                                                                          aaaataaaatAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                     <  2:2090249/128‑1 (MQ=255)
                                                                           aaataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATTCAATATTTAAATTAAAATATTTTATAATATCAACCTTTTATAAATaaaaaaa                                                 >  2:633134/1‑128 (MQ=255)
                                                                            aataaaataaTTGTTAAATAATATTCAAAAAATATATAACATACATTAAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                   <  2:1328169/128‑1 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATAATTA‑‑‑‑AATATGTAAATGAAAATATGTTATAATATCAACATTTTATAAATTAAAAAAATa                                               >  2:945622/1‑128 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTATATGATAATATTGTATATTAGCATCCGTTTATAAAGTaaaaa                                                   >  2:755993/1‑128 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATAAAATATTTAAATTAAAATATTGTATAATAACAAAAGTTTATaaatatctta                                                   >  2:572009/1‑121 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                 >  2:667701/1‑128 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGATATAATAGCAACCTTTTATAAAGTaaaaaaa                                                 >  2:1965941/1‑128 (MQ=255)
                                                                             ataaaataTTTTTTATATAATATTTAAAAAATATATAAAATACATTTATTATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                    <  2:2053072/128‑1 (MQ=38)
                                                                              taatataTTTGTTAAATAAGATTCAAAAAATATATAAAATATATTAATTATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                   <  2:1615483/128‑1 (MQ=38)
                                                                               aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATATCAAAAGTTTATAAATTaaaaaa                                                  >  2:1001808/1‑128 (MQ=38)
                                                                               aaaataCTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAg                                              <  1:2380728/128‑1 (MQ=255)
                                                                                   taatttatACATACGATTTAAAAAATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  2:1998403/121‑1 (MQ=255)
                                                                                   taCTTGTTACATACGATTCAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTa                                            <  1:161608/128‑1 (MQ=255)
                                                                                      ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATTAAAAAAATATTAAat                                         >  2:1770819/1‑128 (MQ=255)
                                                                                      ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAat                                         >  1:1122948/1‑128 (MQ=255)
                                                                                      ttGTTACATAAGATTCAAAACATATATAAAATACATTCAATATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                           <  2:2147682/128‑1 (MQ=255)
                                                                                              taataTTCAAAACATATATAACATACATTCATTTTATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAataagtagta                                 <  2:393817/124‑8 (MQ=255)
                                                                                                    taaataCATATATAACATAAATTAAT‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                         <  2:1454299/123‑1 (MQ=255)
                                                                                                     cAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATTGTATAATAGCAACAGTTTATAAAGTAAAAAAATATTAAATATAAAACTTATATAc                          >  1:1585433/1‑128 (MQ=255)
                                                                                                       aaaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATTAAAATATTGTATAATAGCAACCTTTTATAAATTAAAAAAATAGTATATATACAAATTATTTACta                        >  1:1089378/1‑128 (MQ=255)
                                                                                                        aaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                       <  2:1257121/128‑1 (MQ=255)
                                                                                                         aCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAATTCTATATTTAAATGAAAATATTGTATAATAGCAACCGTTTAATAAGTAAAAAAAAAGTAAATAAACTAAATAtttcaaaaa                      >  2:1556628/1‑122 (MQ=255)
                                                                                                           atatatAACATACATTCAT‑‑TATATATATATATATATATATATAATGAAATATTTAAAAGAAAATATGGTATAATATAACACGTTTATAAAGAAAAAAAATAAAAAATATACAACTAATTAACtaaaaa                    >  1:1531404/1‑128 (MQ=255)
                                                                                                            tatataACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                   >  1:2095919/1‑128 (MQ=255)
                                                                                                              tataACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt                 <  1:491368/128‑1 (MQ=255)
                                                                                                              tataACATACATTCAT‑‑TATATATATATATATATATATATAATGAAATATATAAAAGAAAATATGTTATAATAGAAAACTTATATAAAGTAAAAAAATAGTAAATATAATACTTAATTACAAAAAAAAt                 >  1:1059888/1‑128 (MQ=255)
                                                                                                                taATATAAATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:1691193/128‑1 (MQ=255)
                                                                                                                taACATACATTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCt               >  1:2000952/1‑128 (MQ=255)
                                                                                                                taACATAAATTCA‑‑ATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:2274944/128‑1 (MQ=255)
                                                                                                                  tataaaataaattattTATTTATATATATTAATAATTAATGAAATTTGTAAATTAAATTTTGGTTTATTAGCAACGGTTTATAATGTAAAAAAATAGTAAATATAATAATTTTTAAAAAATAAAATCt               <  2:2184625/118‑1 (MQ=255)
                                                                                                                    atacatTCAT‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCAAttt           >  2:808976/1‑128 (MQ=255)
                                                                                                                          tcattATATATATATATATATATATATATAATGCAATATGTAAATGAATATATTGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATATAATAATAATATATATAtttat       >  1:1158772/1‑128 (MQ=38)
                                                                                                                           ttatatatatatatatatatatatatataATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttatt      <  2:892389/125‑1 (MQ=255)
                                                                                                                              tatatatatatatatatatatatataTTTATATTTATAAATAAATATATTTTATAATAACAAAATTATAAAAAATAAAAAAATAAAAAATAAAAGAATTATTAAATAATAATATATATTtttataaaa   >  1:247141/1‑124 (MQ=255)
                                                                                                                               atatatatatatatatatatatataATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTGTTTTAATAATAAAATCTAGTTTTATTTaaa  >  2:1389284/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                               
TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: