Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA38.6% 906.6 / 293.6 915intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (167/375);  new base A (280/61);  total (455/460)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 939 total aligned reads displayed.

GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378
                                                                                                                                    |                                                                                                                               
taaaaATAATATCAATTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTTAATTATTTTAAAATATTTATATATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACa                                                                                                                                <  1:1436088/127‑1 (MQ=255)
 aaaaCTAATTTCACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTCAAATTTTTAAATTATTTTAAAAAAATTATATATAAATCAA‑‑TTTAATGGTCG‑‑TTTTTTTTTTTTTTTTTACaa                                                                                                                               <  1:2265489/128‑1 (MQ=255)
  aaaaTAATATCAATTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATATAATAATAAA‑‑TTTTATTCTCG‑‑TTTTTTTTTTTTTTTTTACaaa                                                                                                                              <  1:1536060/128‑1 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTaaaaaa                                                                                                                              >  1:1667843/1‑128 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAaaaa                                                                                                                              >  1:1170391/1‑128 (MQ=255)
   aaataaaattaattttttAAAAAAATTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATTTTTTAATCAA‑‑TTTTATTTTCGTTTTTTTTTTTTTTTTTTACaaa                                                                                                                              <  2:2199380/116‑1 (MQ=255)
   aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACaaaa                                                                                                                             >  1:2217188/1‑128 (MQ=255)
    actacaAGAAATTTTTTAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACaaaaa                                                                                                                            <  1:2136623/128‑1 (MQ=255)
         tatcACTTTTTTAAAAAATTTTTAATTTTAAAAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATaa                                                                                                                      <  2:2037408/125‑1 (MQ=255)
          atcttactatataaaaaTTTTTAATTTTAATAAATTAATTATTTTTAAATTTTTTAATTTATTTTAAAATAATTATAAATTAATAAA‑‑TTTTATTATAT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAat                                                                                                                     <  1:1002713/116‑1 (MQ=255)
          aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAaaaataaaat                                                                                                                     >  2:1851107/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAattt                                                                                                                   >  1:267619/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATATAtttt                                                                                                                   >  1:2101978/1‑128 (MQ=255)
            catttttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTAAAATAATTATATATTATTAAA‑‑TTTTATTCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAattt                                                                                                                   <  1:1569179/125‑1 (MQ=255)
            cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAATATAattta                                                                                                                  >  2:2097988/1‑128 (MQ=255)
             aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAatttat                                                                                                                 >  2:342542/1‑128 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAAAATAattttt                                                                                                                 >  2:1955426/1‑126 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAatttattt                                                                                                               >  2:588658/1‑128 (MQ=255)
               tttattAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTAAATTATTTTCAAATAATATTATATTAATCAA‑‑ATTTATGCGCGTTTTTTTTTTTTTTTTTTACAAAAATATAatttat                                                                                                                 <  2:1990494/128‑1 (MQ=255)
                tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TTTTTTTTTTTTTTTACAAAAATATAATTTATTTGa                                                                                                             >  2:2367218/1‑128 (MQ=255)
                 ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTGa                                                                                                             >  1:1121679/1‑128 (MQ=255)
                  tttAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATTTTAAACAA‑‑TTTTATGTTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGa                                                                                                             <  2:511771/128‑1 (MQ=255)
                    tAAAAAATTTTTAATTTTAATAACTTAATTATTTATCAAATTGTTAAATTATTTTCAAAACAATATATATTAAACAA‑‑TTTTTTGCCCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGAtt                                                                                                           <  1:1851270/128‑1 (MQ=255)
                      aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTaa                                                                                                         >  1:1978402/1‑128 (MQ=255)
                        aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTaaaat                                                                                                      >  1:375789/1‑126 (MQ=255)
                        aaaTTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATATTTTAATAAA‑‑TTTTTTTCTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAAc                                                                                                       <  2:30633/128‑1 (MQ=255)
                          ttttttaatattaatAAATTAATTATTTTTAAAATTTTTAAATTTTTTTTAAATAATTATCTAATAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGt                                                                                                     <  1:520496/116‑1 (MQ=255)
                             tttaattttaataatTTAATTTTTTTTTATATTTTTATATTTTTTTTAAATTATTATATATTAATAAATTTTTTTTTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGta                                                                                                    <  1:56565/119‑1 (MQ=255)
                             tttaattttaatAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATCAA‑‑TTTTATTCTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGtata                                                                                                  <  1:2334361/119‑1 (MQ=255)
                                 aatttaatAACTTTATTATTTTTTAAATTTTTAAATTATTTTAAAATCATTATATATTAATAAA‑‑TTTTATTGTAGTTTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                               <  1:2048944/123‑1 (MQ=255)
                                  tattaatAACTGAATTATTTTTCAAATTGTTAAAATATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTa                                                                                              <  1:2013408/124‑1 (MQ=255)
                                   tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACTTATATTTAtt                                                                                            >  1:907559/4‑127 (MQ=255)
                                   attaattaatttattattTTTATAATTTTTTATTTTTTTTCAAATAATTATTTATTAATAAA‑‑TTTTTTTTTTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATg                                                                                            <  1:1026280/116‑1 (MQ=255)
                                     ttataaattatatattTTTTTAATTTTTAAATTATTTTTAAATTATTATATTTTAATTAA‑‑TTTTATTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                          <  1:12101/116‑1 (MQ=255)
                                     taatatatttatttttTTTTAAATTTTTAAATTTTTTTTAAATTATTTTATTTTAATAAA‑‑TTTTTTTGTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                          <  2:676630/118‑1 (MQ=255)
                                     taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACGTATATTTATGtt                                                                                          >  2:1253797/2‑128 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTACAAAAATATATTTTATTTTATTAAACTTAAATTTAtttt                                                                                          >  1:1393142/1‑128 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAAAATTAAATTTTTTAATTAAAATTttatttattt                                                                                           >  1:328042/1‑126 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTATGttt                                                                                         >  1:1817562/1‑128 (MQ=255)
                                       attatataaTTTTTTTTAATTTTTTTAAATTTTTTTAAAATAATTATTTTTTAATAAA‑‑TTTTTTTTTTT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                        <  1:147848/121‑1 (MQ=255)
                                        tAACTTAATTATTTTTATAATTTGTTAATTATTTTAAATTCATAATCAATTAATCAA‑‑TTTTTTGGTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaa                                                                                       <  2:1351853/128‑1 (MQ=255)
                                        tAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAATATAATTTATTTAATTAAAATTAtttttattttta                                                                                        >  1:21717/1‑128 (MQ=255)
                                           ttttatttttTTTAAAATTTTTAAATTTTTTTTAAATATTTTTATATTAATAAT‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                    <  1:2367481/124‑1 (MQ=255)
                                           cttatttattTTTAAAATTTTTTAAATATTTTAAAAAAATTATCTATTAATAAA‑‑ATTTATTCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                    <  2:1040941/123‑1 (MQ=255)
                                                tttttttttAATTTTTTATATTTTTTTTTTATATTTATTTATTTATAAT‑‑TTTTATTTTTT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATg                                                                               <  2:904125/125‑1 (MQ=255)
                                                ttattTTTCAAATTGTTAAATTATTTTCAAATCGTTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAATTTATTTTATTAAAATTATATTTTTTTTTAATAAAAAtt                                                                               >  1:1896600/1‑127 (MQ=255)
                                                ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TATTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTATTAAAAATg                                                                               >  1:1337621/1‑128 (MQ=255)
                                                 tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATATTATTAAAAATATATTTTTTTTTAAAAAAAATga                                                                              >  2:1582268/1‑127 (MQ=255)
                                                   tttttAATATTTTTAATTTTTTTTAAATAATTTTCTATTTTTAAT‑‑TTTTATTCTCT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaa                                                                           <  2:1081970/128‑1 (MQ=255)
                                                    ttttaaattttttaaattTTTTTTTAAATATTTTTTTTTTTTTAA‑‑TTTTATGGTG‑‑GTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                          <  2:2130926/128‑1 (MQ=255)
                                                       tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTTTTTAAAATTATATTTATTTTTAATAAAAATTAaaaaaa                                                                        >  1:748609/1‑126 (MQ=255)
                                                         aaaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTAAaaagaaag                                                                     >  1:823639/1‑128 (MQ=255)
                                                          aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATAAAACATAATTTTTTTTTTAATAAAAAAGTAaaataatt                                                                     >  2:114798/1‑126 (MQ=255)
                                                             ttttAATTTATTTTAAAATAAATTTATTTTATTCAA‑‑TTTTTTTGTGT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGa                                                                  <  2:784487/126‑1 (MQ=255)
                                                              tttAAATTATTTTAAAATAATTATATATTAATTAA‑‑TTTTATTTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGa                                                                  <  1:883874/127‑1 (MQ=255)
                                                                 taaTTTTTTTTAAATAATTATTTTTTAATAAT‑‑TTTTTTTTTTT‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                              <  1:2456902/127‑1 (MQ=255)
                                                                   tttattTTAAATTAATTTTATATTATTTAT‑‑TTTTATTTTA‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCa                                                           <  1:634591/127‑1 (MQ=255)
                                                                   attattTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTGt                                                             >  1:59480/1‑128 (MQ=255)
                                                                      atatataaaTCAATATAAATTAATAAA‑‑TTTTATTCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                         <  2:2269872/122‑1 (MQ=255)
                                                                        tttCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTTAATTTTCataat                                                       >  1:2291894/1‑128 (MQ=255)
                                                                         ttataaTTATTATTTATTAATTAA‑‑TTTTTTTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCataata                                                      <  1:1301174/124‑1 (MQ=255)
                                                                          ttaattttttATTTTTTAATTAA‑‑TTTTTTTATTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAtaataa                                                     <  2:818400/120‑1 (MQ=255)
                                                                              aTCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAATATAATTTTTTTTATAAAAAGTAAATTTATTTTTAATAAAAATTAAAAAATAAGTAAATTGTAATAAtaaatt                                                  >  1:1709410/1‑128 (MQ=255)
                                                                                  ttATCTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTTACAAAAATATAATTTTTTTTTTTAAACTTATTTTTTTGTTTAAAAAAAATGTAATAAAATTTTAATTGTAATAAaaatttaat                                              >  1:1594202/1‑128 (MQ=255)
                                                                                  ttATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATttaattaa                                           >  2:1409472/1‑128 (MQ=255)
                                                                                   tATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAATAATAATttaattaa                                           >  1:4746/1‑128 (MQ=255)
                                                                                    atatATTAATCAA‑‑TTTTATTTTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTaaa                                          <  1:1950833/125‑1 (MQ=255)
                                                                                      cTATTAATCAA‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTAATAAAACTTATATTTTTTTTTAATAAAAATTTAAAAAAAAGTTAATTTTAATAATAATTTAATAAAat                                         >  1:2249339/1‑128 (MQ=255)
                                                                                        aTTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACGAATTTTTATTTTTAAAAAAAATTTAAAATAAATTAAATTTTAATAATAATTTAATTAAataat                                      >  2:274408/1‑126 (MQ=255)
                                                                                          tAATCAA‑‑TTTTATGCTCG‑‑‑‑TTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAACCGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAAc                                  >  2:1908691/1‑128 (MQ=255)
                                                                                            aTCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAAATTATTTGATTAAAATTATATTTATTTTTAAAAAAAATTTAAAAAAAATTTAATTTACATTATAATTTTAATAAattaaataa                                  >  2:2070474/1‑121 (MQ=255)
                                                                                             tCAA‑‑TTTTATTCTG‑‑GTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACaa                                <  2:2329440/128‑1 (MQ=255)
                                                                                                a‑‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAATAAAATTTATTTATTAAAACTTATATTTTTTTTTAAAAAAAATGAAAAAAAAAGTAAATTTAAAAAAAATTTAAATTAAATAAATAAAAAt                               >  1:2079868/1‑128 (MQ=255)
                                                                                                      ttttttgtttttttttttttttttttttAATAAAATATTATTTATTTGTTTAAATGTTTATTTATGTTTAATATAAATGGTTAAGAAAGTTAATTGTCATAATAATTTAATTAAATATATAACAATGt                             <  2:1532844/117‑1 (MQ=255)
                                                                                                         tttttttttttttttttttttttttAAAAAAATATAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAg                          <  1:1085717/120‑1 (MQ=255)
                                                                                                         tttttg‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                        <  2:2442862/123‑1 (MQ=255)
                                                                                                          gCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTTAAAATAAAGTTAATTTTAATAATAATTTAATTAAATATAAAAAAATTTAAtttta                      >  1:696777/1‑127 (MQ=255)
                                                                                                            ttatttttttttttttttttttAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                       <  2:956543/123‑1 (MQ=255)
                                                                                                             tttttttttttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                      <  1:779362/124‑1 (MQ=255)
                                                                                                             tttttttttttttttttttttACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                      <  1:105060/124‑1 (MQ=255)
                                                                                                             cG‑‑TTTTTTTTTTTTTTTTTAAAAAATAATAATTTATTTAATTAAGCTTAAATTTTTGTTTAATTAAAATGTAAAAAAAAGTAATTTTTCATAAAAAATTAATAAAAATTAAAACAATATAATTTTTaa                    >  2:1296640/1‑128 (MQ=255)
                                                                                                              tttttttttttttttttttttAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGGATTGTCATAATAATTTAATTAAATATATAACAAAGTAAGTTTTa                     <  2:615585/125‑1 (MQ=255)
                                                                                                              ttttttttttttttttttttATAAAAATATAATTTATTTGATAAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTTTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  2:720601/125‑1 (MQ=255)
                                                                                                              ttttttttttttttttttttACAATAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:2193783/125‑1 (MQ=255)
                                                                                                              ttttttttttttttttttttACAAAAATATTATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:660064/125‑1 (MQ=255)
                                                                                                              cgttttttttttttttttttAAAAAAATATAATTTATTTGATTAAACTTATATTTATTTTTAATAAAAATGTAAAAAAAAGTGAATTTTCATAAATATTTAAATAAATATATAAAAATTTAAGTTTTa                     >  2:755465/4‑128 (MQ=255)
                                                                                                                cgttttttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAAGTGAATTTTCATAATAATTTAATTAAATATATAACAATTTAATTTTTaaa                   >  2:1829111/3‑128 (MQ=255)
                                                                                                                cgttttttttttttttttAAAAAAATATAATTTTTTTGATTAAAAGTATTTTTATTTTTAATAAAAATGGAAAAAAAATGTAATTTTAATAATAATTTTAATAAAAAAATAAAATAGTAATTTTTaaa                   >  2:2181536/3‑128 (MQ=255)
                                                                                                                 tttttttttttttttttACAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                  <  2:1188983/128‑1 (MQ=255)
                                                                                                                  ttttttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAACAAAGTGAATTGTCATAATAATTTAATTAAATATATAAAAATGTAAGTTTTAAAac                 >  1:1925215/1‑128 (MQ=255)
                                                                                                                  ttttttttttttttttAAAAAAATATAATTTTTTTTTTTAAAAGTTTTTTTATTTTTAATAAAAAAGTAAAAAAAATTTAATTTAAATAAAAATTTAAATAAAATTATAAAAAATTAATTTTTaaaaa                 >  2:542036/1‑127 (MQ=255)
                                                                                                                    ttttttttttttttAAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt               <  1:2405012/128‑1 (MQ=255)
                                                                                                                     tttttttttttttATAATAATATATTTTATTTGATTAAAAGTATATTTATGTTTTATTAAAATTGAAAAGAAAGTTAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1463817/128‑1 (MQ=255)
                                                                                                                     tttttttttttttAATAAAATTTAATTTATTTGATTTAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1666215/128‑1 (MQ=255)
                                                                                                                       tttttttttttAATAAAATATAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact            <  2:433863/128‑1 (MQ=255)
                                                                                                                          cacaaaaacaCAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt          <  1:965850/119‑1 (MQ=255)
                                                                                                                           tttttttAAAAAAATATAATTTTTTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAATTGAATTTTAATAAAAATTTAATTAAATATTAAAAAATTTAATTTTTaaaaaaaaattttt        >  2:222633/1‑118 (MQ=255)
                                                                                                                                ttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  2:1872054/128‑1 (MQ=255)
                                                                                                                                 tACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAATCTTACTTTTTTGtttt  <  2:855986/128‑1 (MQ=255)
                                                                                                                                 tACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt  <  1:1259751/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                               
GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: