| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP016816 | 20,701 | +A | coding (286/1920 nt) | JCVSYN2_00070 → | tetracycline resistance ribosomal protection protein Tet(M) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 20,699 | 1 | . | A | 93.9% | 3881.5 / 215.6 | 1371 | coding (284/1920 nt) | JCVSYN2_00070 | tetracycline resistance ribosomal protection protein Tet(M) |
| Reads supporting (aligned to +/- strand): ref base . (41/41); new base A (672/595); total (726/645) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1454 total aligned reads displayed.
GGAATTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGC‑A‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCAAAATGGAATTG > CP016816/20572‑20821 | ggACTTACAATTCAGACAGGAAAAACCTCTGTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGc < 1:1221250/128‑1 (MQ=255) aaTTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACCTCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGGATATCGTTCATTATCAGTGTTAG‑ATGGGGC‑a‑a > 2:2482630/1‑128 (MQ=255) aTTACAATACAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACAAATGGATTTCGTAGCAGAAGTAAAACGAACAGTATCAGTTTTAG‑ATCGGTC‑aca > 2:1380474/1‑126 (MQ=255) ttACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGC‑a‑aat < 2:1291031/128‑3 (MQ=255) cAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACAAGCCAGGACAAATCTATTTCTTAGCAGAAGTATATCGTTCATTATCAGATTTAG‑ATGGGGC‑a‑aattct > 2:89723/1‑123 (MQ=255) tcagtcagGAATCACCTCTTTTCCGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTg < 1:4123926/128‑1 (MQ=255) tCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTACATTATCAGTTTTAG‑ATGGCGCAA‑A‑TTCTAcag > 2:801639/1‑126 (MQ=255) tCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGACAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGGTGTAG‑ATGGTGCAA‑A‑TTCTACTg > 2:3115324/1‑128 (MQ=255) aGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAt > 2:2694182/1‑128 (MQ=255) aGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAt > 2:381509/1‑128 (MQ=255) aGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAACAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAt > 2:450458/1‑128 (MQ=255) gACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAtt < 1:250610/128‑1 (MQ=255) aCAGTAATAACGTCTTTTCAGTGGTAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATCGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAttt < 1:814310/128‑1 (MQ=255) ggAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGTGGCAA‑A‑TTCTACTGATTTCTg > 2:2560826/1‑128 (MQ=255) gAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGc > 2:4402880/1‑128 (MQ=255) tAACCTCTATTCAGTGGGAAAATCCGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCaaa < 1:1399520/128‑1 (MQ=255) aaCCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCaaaa > 1:1500342/1‑128 (MQ=255) ctctTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCAGTATCAGTTTTAG‑ATGGGGCAA‑A‑GTCTACTGATTTCTGCAAAAGAt > 1:4496654/1‑128 (MQ=255) ctctTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATAAGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTATAG‑ATGGGGCTA‑A‑TTCTACTGATTTCTGCAAAAGAt < 2:2773720/128‑1 (MQ=255) tctTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATg > 1:4373608/1‑128 (MQ=255) ttttCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGc > 1:3095658/1‑128 (MQ=255) ttttCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTGTTAG‑CTGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGAGGGc > 1:2342238/1‑128 (MQ=255) ttCAGTGGGAAAATTCTATGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGt < 2:1187690/128‑1 (MQ=255) ttCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATTTCGTTCATTATCAGTTTTAG‑CTGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGt > 1:2052024/1‑128 (MQ=255) ttCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGt < 2:4204975/128‑1 (MQ=255) ttCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGGTCATTATCAGTTTTAG‑ATGGGTC‑ATA‑TTCTACTGATTTCTGCAAAAGATGGctg > 1:1142684/1‑126 (MQ=255) tccgttggAACATACGAAGGTGACCATCCTAGACACTACAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTa < 1:2903069/122‑1 (MQ=255) tCAGTGGGAAATTACGAATTTGAACATCATATACTCGCCAGGCCATATGGTTTTCTTAGCAGACGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTa < 1:1934525/128‑1 (MQ=255) cAGTGGGAAAATACGATGGTGAACATCTTCGACATGCCAGTACATATGGATTTCTTAGCATAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTAc < 2:2057360/128‑1 (MQ=255) cAGTGGGAAAATACGAAGGTGAACATCCTAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTAc < 1:429471/128‑1 (MQ=255) cAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAt < 1:3665827/108‑1 (MQ=255) cAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAt > 2:3665827/1‑108 (MQ=255) aGTGGGAAAATAAGAAGGTGAACATCAGAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACa < 1:937948/128‑1 (MQ=255) aaaaTACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGcaca > 1:109209/1‑128 (MQ=255) aaaaTACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGcaca > 2:4281742/1‑128 (MQ=255) catccGAATGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACaaa < 1:3409171/124‑1 (MQ=255) aTACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTTTCAGTTTTAGAATGGGAA‑A‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGAACAAAc > 2:716812/1‑128 (MQ=255) aaGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGta < 2:335457/128‑1 (MQ=255) ggTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGtata > 2:4614069/1‑128 (MQ=255) ggTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATAAGTTTTAG‑ATGGGTCAA‑A‑TTCTACTGATTTCTTCAAAAGATGGCTTAAAATCACAAACTCGtata > 2:507701/1‑128 (MQ=255) tgtaCATCTAAGACAAGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTAtatt < 1:3595753/125‑1 (MQ=255) tGAACATCATAGCCACGCCCGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCTA‑T‑TTCTACTGCTTTCTGCAAAAGATGGCGTACAAGCACACTCTCGAAtatt > 1:2126677/1‑128 (MQ=255) tGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAGTTCTGCTAAAGAAGGCGTTCAAGCACAAACTCGGAtatt > 1:4178664/1‑128 (MQ=255) gAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATAGCGTTCATTATCAGTGTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTagataa > 1:3300973/1‑126 (MQ=255) aCATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATattatt > 2:3722200/1‑128 (MQ=255) tAGACTAGCCAGGACATCTGGATTTCTTAGCAGTAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGc < 1:1764214/128‑1 (MQ=255) tAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGc > 1:4070730/1‑128 (MQ=255) tAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGc > 1:1591960/1‑128 (MQ=255) agactcgggaGGACATAAGGATTTCTTAGCTGAAGTATATCGTTCATTATCAGTTATTG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTTTTTAATGCa < 2:1755039/119‑1 (MQ=255) aGACAGTCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGTCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCa < 1:3154502/128‑1 (MQ=255) gACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACTCGCACCAACTCGGAAAGTAGTTCAGGCAc > 2:2369144/1‑128 (MQ=255) cacGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCATAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGctcta > 1:3803585/1‑127 (MQ=255) cGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGAtt > 1:3869622/1‑75 (MQ=255) cGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAg < 1:3240015/128‑1 (MQ=255) cGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATAAGTTTTAG‑ATGTGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACACGCACAAACTCGTATAGTATTTCATGCACGTAg > 1:2716966/1‑128 (MQ=255) gCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAgg < 2:4131781/128‑1 (MQ=255) cccggACATTGGGATTGCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGa < 1:3977443/125‑1 (MQ=255) ggACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGCaaaa > 2:582985/1‑128 (MQ=255) aCATATGGATTTCTTAGCAGAAGTATCTCGTTCTATATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATg < 1:3476652/128‑1 (MQ=255) aCATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGCTGGCGTACAAGCACAAACTCGAAGATTATATCATGCACTTAGGAAAAta > 2:3195355/1‑127 (MQ=255) tatGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTACAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAg > 1:710898/1‑118 (MQ=255) atGGATTTCTTCGCAGAAGTATATCGTTCATTATCCGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAATATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGa < 2:1871979/128‑1 (MQ=255) atGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGa < 1:2619233/128‑1 (MQ=255) tttCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCTA‑T‑TTCTACTGATTTCTGCTAAAGATGGCGAACCTGCCCAACCTCGTCTAAAATTTCTAGCAAATACGAAAATGAGGATTccc > 1:3016597/1‑128 (MQ=255) tttCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTccc < 2:4350006/128‑1 (MQ=255) ttAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTccc > 2:672686/1‑124 (MQ=255) tAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAAt < 2:628916/128‑1 (MQ=255) aGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGTCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATc < 1:3722561/128‑1 (MQ=255) gCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCt > 1:278845/1‑128 (MQ=255) aGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCttt > 2:2630771/1‑128 (MQ=255) gAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGAtt < 2:4057400/115‑1 (MQ=255) gAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCtttt < 2:2843167/128‑1 (MQ=255) gAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCtttt < 2:1116538/128‑1 (MQ=255) gAAGTATATCGTTCATTATCAGTGTTAG‑ATGGGGCTA‑A‑TTCGACAGATTTCTGCAAACGCTGGCGAACAAGCACAAACTCGTATTATATTTCCTGCACGTAGGAAAATGGGGCTGCCCACActctctg > 1:2402865/1‑125 (MQ=255) tgtagagagTTCATTATCAGTGTTAG‑ATGGGGCTA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACACGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCtttttt < 1:1298452/120‑1 (MQ=255) aGTATCTCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCtttttt < 2:1028601/128‑1 (MQ=255) aGTATATCGTTCATTATCAGTTTTAG‑ATGGTGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCtttttt < 2:167117/128‑1 (MQ=255) aGTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCttattg < 1:1009989/128‑2 (MQ=255) gTATTTCTTTTATTATCAGTTTTAG‑ATGGGGC‑A‑ATTTATACTGATTTCTGCATAAGATTGCGTACAAGGACAAATTCGTATATTATTTGATGCACTTAGGAAAATGGGGATTCCCACAATCttttttt < 1:2174102/128‑2 (MQ=255) gTATATCGTTGATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTa < 2:2174029/128‑1 (MQ=255) gTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTa > 2:3258377/1‑128 (MQ=255) gTATATCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCACACAATCTTTTTTa > 2:2982690/1‑128 (MQ=255) tataTCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGCATACCCACAAACGTTTGTAt > 2:2937936/1‑128 (MQ=255) atatCGTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATc > 2:1981000/1‑128 (MQ=255) tCGTTCATTATCAGTTTTAG‑ATTGGGCAA‑A‑TTCTTCTGATTACTGCAAAAGATGGCGTACAAGCACAACCTCGTATATTATATCATGAACTAAGGAAAATGGGGATTCCCACTATCTTTTTTATCAAt > 2:2273345/1‑128 (MQ=255) gTTCATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCTCTTAGGAAAATGGGGATACACACAATCTTTATTATCAATaa > 2:3613837/1‑128 (MQ=255) cATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGAt > 2:3964360/1‑128 (MQ=255) cATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGAt > 2:3431344/1‑128 (MQ=255) cATTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACGTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGAt > 2:3903874/1‑128 (MQ=255) aTTATCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGAtt > 1:462614/1‑128 (MQ=255) aTCAGTTTTAG‑ATGTGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGAc < 2:352940/128‑1 (MQ=255) aTCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGAc < 2:1924290/128‑1 (MQ=255) aTCAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGAc < 1:1855045/128‑1 (MQ=255) cAGTTTTAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCa < 2:1527710/128‑1 (MQ=255) aGTTTAAG‑ATGGGGCAA‑A‑ATCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCaa < 1:1660397/128‑1 (MQ=255) ttttAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCaaaa < 1:2564986/128‑1 (MQ=255) tAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCAAAATgg > 1:654799/1‑128 (MQ=255) tAG‑ATGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCAACAATCTTTTTTATCAATAAGATTGACCAAAATgg < 1:51953/128‑1 (MQ=255) tGGGGCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCAAAATGGAAtt > 2:1826405/1‑128 (MQ=255) ggggCAA‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGTAAAATGGGGATTCCCACAAACATATTTATCAATAAGATTGACCAAAATGGAATTg > 2:1598495/1‑128 (MQ=255) | GGAATTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAG‑ATGGGGC‑A‑A‑TTCTACTGATTTCTGCAAAAGATGGCGTACAAGCACAAACTCGTATATTATTTCATGCACTTAGGAAAATGGGGATTCCCACAATCTTTTTTATCAATAAGATTGACCAAAATGGAATTG > CP016816/20572‑20821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |