Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2780CA32.4% 2204.5 / 229.3 1505intergenic (‑561/+282)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (518/467);  new base A (233/239);  total (766/739)
Fisher's exact test for biased strand distribution p-value = 2.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1543 total aligned reads displayed.

AAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420149‑420405
                                                                                                                                          |                                                                                                                                 
      tttttatttttatAAATTAATTATTTTTTAATTTTTTAAATTTTTTTAAAATATTTTATTATTAATAAAT‑TTTTTTTTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGta                                                                                                                                <  2:2806604/117‑1 (MQ=255)
          aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACTTATAtttt                                                                                                                          >  2:4349600/7‑127 (MQ=255)
              ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACTTATATTTAttt                                                                                                                       >  2:4563049/3‑126 (MQ=255)
              ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATAAA‑‑TTTTATGATCGTT‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATAAAATTTATTTTATT‑AAAAGTATAttttt                                                                                                                         >  2:3136735/3‑126 (MQ=255)
              ttaatAAATGATTTATTTTTTAAATTTTTAAATTATTTTAAAATCATTATCTATTAATAAA‑‑TTTTATGCTAG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGt                                                                                                                       <  2:4613240/126‑1 (MQ=255)
               taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTTAACAAAAATAATATTTATTTGATT‑AAACTTAAAATTAttt                                                                                                                       >  1:3476172/2‑126 (MQ=255)
               taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTTATT‑AAACGTATATTTATGtt                                                                                                                      >  1:1271422/2‑128 (MQ=255)
                aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTA‑AAAAAAAAATAATTTTTTTTATA‑AAAGTTAAATTTATtttt                                                                                                                     >  2:153619/1‑128 (MQ=255)
                 ataaatttatttttTTTAAAATTTTTAAATTTTTTTAAAATTATTTAATTTTTATAAATTTTTTTTTATTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGtt                                                                                                                      <  1:1585827/120‑1 (MQ=255)
                  taaatttattattTTTAAAATTTTTAAATTATTTTCAAATAATTATATATTAATTAA‑‑TTTTATGTTC‑‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTt‑aata                                                                                                                <  1:2020309/121‑1 (MQ=255)
                    aCTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTTATT‑AAAATTATATTTATTTTt‑aataa                                                                                                               >  2:4269818/1‑128 (MQ=255)
                     tataaTTATTTTTATAATTTTTTATTTTTTTTATAATAATTATATATTAATAAA‑‑TTTTTTTTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTt‑aataa                                                                                                               <  2:2017089/125‑1 (MQ=255)
                     cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAAAGTATATTTATTTTt‑aaaaa                                                                                                               >  1:4447321/1‑128 (MQ=255)
                     cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTAATT‑AAACTTATATTTATTTTT‑AATaaa                                                                                                              >  2:4110258/1‑128 (MQ=255)
                      tttatttttTTTTAAATTTTTTAATTTTTTTTAAATTATTTTTTTTTAATTAT‑‑TTTTTTTTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATaaa                                                                                                              <  1:1069520/125‑1 (MQ=255)
                      tttatttttTTTAAATTTTTTTATTTATTTTTAAATAATTATATTTTTATTAT‑‑TTTTTTTTTTGT‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTt‑aataa                                                                                                               <  1:1636011/125‑1 (MQ=255)
                      tttattattTTTAAAATTTTTAAATTTTTTTAAAATAATTATTTATTAATTAA‑‑TTTTTTTTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATaaa                                                                                                              <  1:811936/125‑1 (MQ=255)
                      tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACTTATATTTATGTTT‑AATaaaa                                                                                                             >  2:1265810/1‑128 (MQ=255)
                         attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAAAATAATTTATTTTATT‑AAACGTATATTTATTTTT‑AATAAAAAt                                                                                                           >  2:1011903/1‑128 (MQ=255)
                         attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAAAGTATATTTATTTTT‑AATAAAAAt                                                                                                           >  2:2348968/1‑128 (MQ=255)
                          ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTA‑AAAAAATTAAAATTTTTTTTATA‑AAAAGTATATTTATTTTT‑AATAAAAAtt                                                                                                          >  2:544157/1‑127 (MQ=255)
                          ttattTTTCAAATTGTTAAATAATTTTCAAATAATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTTATTTTTTTTTTATTTT‑AAAAAAAAAAAAATTATTATAAT‑AAAATTATATTATTTTTA‑AATaaaaa                                                                                                            >  2:2187501/1‑128 (MQ=255)
                          ctattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATTAATTTTATTTTATT‑AAAATTATATTTATTTTT‑AATAAAAAttt                                                                                                         >  1:2115301/2‑126 (MQ=255)
                            attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑ACAAAAATAAAATTTATTTTATT‑AAACGTATATTTATGTTT‑AATAAAAATTGaa                                                                                                       >  2:2270088/1‑128 (MQ=255)
                               tttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAAATTATATTTATTTTT‑AATAAAAATTTaaaa                                                                                                     >  2:2447118/1‑128 (MQ=255)
                                tttaaaTTTTTTAATTTTTATTAAATTAATATATTATTATAAT‑‑TTTTATGTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAaaag                                                                                                    <  1:1906979/125‑1 (MQ=255)
                                ttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTA‑TTTTTTTTTT‑TTTT‑ACAAAAATAAAATTTATTTTATT‑AAAAATATATTTTTTTTT‑AATAAAAAAGGaaaat                                                                                                    >  2:4172509/1‑127 (MQ=255)
                                  cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑‑T‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTAATT‑AAACTTATATTTATTTTT‑AATAAAAATGGAaaagaaat                                                                                                >  1:1719432/1‑127 (MQ=255)
                                    aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGT‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAAATTAATTTTTTTTATA‑AAAAGTTTTTTTTTGTTT‑AATAAAAATATaaaaaaaa                                                                                                 >  1:3975989/1‑128 (MQ=255)
                                    aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAAAGTATATTTATTTTT‑AATAAAAATTTAaaataaatt                                                                                               >  2:3894475/1‑126 (MQ=255)
                                      ttGTTAAATTATTTTCAAATTATTATCTTTTAATAAT‑‑TTTTTTGGTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTg                                                                                              <  1:4088859/128‑1 (MQ=255)
                                       ttttttatttttTTAAAATAATTATTTATTTATTAA‑‑TTTTTTGTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGa                                                                                             <  1:2385236/122‑1 (MQ=255)
                                       ttttattttattTTTATATTATTATTTTTTAATAAA‑‑TTTTTTTCTTG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTGATT‑AAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGa                                                                                             <  2:2905353/121‑1 (MQ=255)
                                         ttATATTATTTTAAAATTATTATATATTAATAAA‑‑TTTTATTAT‑A‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAAtt                                                                                          <  2:1620508/128‑1 (MQ=255)
                                            aaTTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAAAAAAATTTTTTTTATA‑AAAATTATATTTATTTTT‑AATAAAAATTTAAAATAAATTTAAttta                                                                                        >  2:1339266/1‑126 (MQ=255)
                                             attattTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGTTTTTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAAAGTATATTTATTTTT‑AAAAAAAATGTAAAAAAAATTTAAtt                                                                                          >  2:638092/1‑128 (MQ=255)
                                             attattTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCGT‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACTTATATTTATTTTT‑AATAAAAATTTAAAATAAATTTAAtttt                                                                                        >  2:14636/1‑126 (MQ=255)
                                             attattTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTGATT‑AAAAGTATATTTATTTTT‑AATAAAAATTTAAAATAAaattaattttaa                                                                                      >  1:1488742/1‑124 (MQ=255)
                                              ttattTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATAAAATTTTTTTTATT‑AAAATTATATTTTATTTA‑AATAAAAAATGAAAAAAAAGTGATTTTT‑Ca                                                                                     >  1:1154962/1‑128 (MQ=255)
                                                 ttttCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATAAAATTTATTTATTT‑AAAATTATTTTTATTTTT‑AATAAAAATTAAAAAGAAAGTAAATTTt‑aataa                                                                                  >  2:3385019/1‑128 (MQ=255)
                                                  tttCAAATCATTATATTTTAATAAA‑‑TTTTATGCTTGTT‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑Cata                                                                                   <  1:3677873/128‑1 (MQ=255)
                                                     ttattaaTTATATTTTAATAAA‑‑TTTTTTTTTAT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATaataat                                                                              <  2:1171169/122‑1 (MQ=255)
                                                       aaTCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACGTATATTTATTTTT‑AATAAAAATTGAAAATAAAGTTAATTTT‑CATAAtaattt                                                                            >  2:86259/1‑128 (MQ=255)
                                                       aaTCATTATCTATTAATCAA‑‑TTTTATGATCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTGATT‑AAAAGTATATTATTGTTT‑AATAAAAATTGAAAATAAAGAGAATTGA‑AAAAAtaattta                                                                           >  1:4169603/1‑128 (MQ=255)
                                                        atatttttattttaattaa‑‑TTTTTTTTTTT‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAAtaattta                                                                           <  2:4488278/117‑1 (MQ=255)
                                                          cATTATCTATTAATCAA‑‑TTTTATGATCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑A‑AAAAAAATTATTTTTTTAATTAAAAAGTAT‑TTTATTTTTAAATAAAATATAAAAAAAAATTAAAATAT‑AATAAtaattaaata                                                                        >  1:3720905/1‑127 (MQ=255)
                                                                cTATTAATCAA‑‑TTTTATGCTCG‑‑‑‑TT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTATTTTATT‑AAACGTATTTTTATTTTT‑AATAAAAATGGAAAAAAAATTTAATTTT‑AATAATAATTTAATTAAatat                                                                  >  1:3843373/1‑128 (MQ=255)
                                                                 tATTAATCAA‑‑TTTTATGCTCGTT‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATAAAATTTTTTTATAT‑AAAATTTTTTTTTTTTTT‑AAAAAAAATTTAAAAAAAATTTATTTTT‑AATAAatatttaatataat                                                                    >  2:2103264/1‑123 (MQ=255)
                                                                  aTTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTA‑ACAAAAAAATAATTTATTTTTTT‑AAACGTTTATTTATTTTT‑TATAAAATTTAAAAAATAATTAAATTTT‑AAAAATATttaaattaaaattt                                                                 >  2:1077369/1‑124 (MQ=255)
                                                                           attttttttttag‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAAt                                                          <  1:2664268/116‑1 (MQ=255)
                                                                                tttattgttgtttt‑tttttttttt‑tttt‑ACAAATATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGt                                                        <  2:4414958/117‑1 (MQ=255)
                                                                                 aTGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATATTTTTTTTTATT‑AAACTTTTTTTTATTTTT‑AATAAAAATGTAAAATAAATTTAATTTT‑ATTAAAATTTTATTTAATTTTATAAAAATTTaatt                                                    >  2:510883/1‑126 (MQ=255)
                                                                                  tGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTTATT‑AAACGTTTTTTTTTGTTT‑AATAAAAATGGAAAATAAATTTAATTTT‑CATAATAATTTAATTAAATATATAAAAATTTAAGtt                                                   >  2:3489334/1‑128 (MQ=255)
                                                                                  tGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTTT‑AATAATAATTTAATTAAATATAAAAAAATGTAAttt                                                   >  2:3988033/1‑128 (MQ=255)
                                                                                  tGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATATAATTTTTTTTATT‑AAACGTATATTTATTTTT‑AATAAAAATGGAAAAAAAATTTAATTGT‑CATAATAATTTAATTTAATTTATAAAaatttaattt                                                   >  1:522129/1‑128 (MQ=255)
                                                                                  tGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑AAAAAAATAAAATTTATTTTATT‑AAACGTATATTTATGTTT‑AATAAAAATGTAAAAGAAAGTTAATTGT‑CATAATAATTTAATTAAATATAAAAAAATGTAAGtt                                                   >  2:1699500/1‑128 (MQ=255)
                                                                                  tGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTA‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATTTTT‑AATAAAAATTTAAAAAAAATTTAATTAA‑AAAAATAATTAAATTAAATATATAAAAATTTatttt                                                   >  1:921821/1‑124 (MQ=255)
                                                                                     ttg‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:4340184/126‑1 (MQ=255)
                                                                                      tg‑‑‑ttt‑ttttgttttt‑ttTT‑ACAAAAATATATATAATTTGTAT‑AACCGTATATTTATGTTT‑AATAAAAATGGAAAAGTAAGTGAATTGT‑CATAATAATTTAATTAAAAATATAACAATGTAAGTTTTaa                                               <  1:2955126/127‑1 (MQ=255)
                                                                                       g‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATTTTTATTTTT‑AATAAAAATGGAAAATAAAGTTAATTTT‑AATAATAATTTAATTAAATATATAACAATTTAA‑TTTTaaaa                                             >  1:4507414/1‑128 (MQ=255)
                                                                                        tttttt‑tttttttttt‑tttt‑AAAAAAATATAATTTATTTGATT‑AAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  2:3794961/125‑1 (MQ=255)
                                                                                        tctttt‑tttttttttt‑tttt‑AAAAAAATATTAATTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:352963/125‑1 (MQ=255)
                                                                                        cgtttt‑tttttttttt‑tttt‑AAAAAAATATAATTTATTTTTTT‑AAACTTTTTTTTATTTTT‑AAAAAAAATGAAAAAAAAATTTAATTTA‑AAAAATATTTAAATTAAATAT‑TAAAAATTTAAAttttta                                               >  1:4394841/4‑126 (MQ=255)
                                                                                         ttttt‑tttttttttt‑tttt‑AAAAAAATATAATTTATTTTATT‑AAACGTATTTTTATTTTT‑AATAAAAATGTAAAAAAAAGTTATTTTT‑AATAATAATTTTATTAAATTTATAAAAATTTAATTTTTaa                                               >  2:2625720/3‑128 (MQ=255)
                                                                                         ttttt‑tttttttttt‑tttt‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑AATAATAATTTAATTAAATATATAACAATGTAAGTTTTaa                                               <  1:1829147/126‑1 (MQ=255)
                                                                                          cgtt‑tttttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAATTGAATTGT‑CATAATAATTTATTTAAATATATAACAATTTAATTTTTaaa                                              >  2:2741005/3‑128 (MQ=255)
                                                                                           ttt‑tttttttttt‑tttt‑AAAAAAATATAATTTATTTTATT‑AAACGTATATTTTTTTTT‑AATAAAAATGTAAAAAAAATTTAATTTT‑AAAAAAAATTTAATTAAATATATAAAAAATAAATTTTTaaaa                                             >  2:1867782/1‑128 (MQ=255)
                                                                                            tt‑tttttttttt‑tttt‑AAAAAAAAATAATTTAATTGATT‑AAAAGTATATTTATTTTT‑AATAAAAATGTAAAAGAAAATTAATTTA‑AATAATAATTTAATTAAATATAAAAAAATTTAATTTTAaaaaa                                            >  1:3338071/1‑127 (MQ=255)
                                                                                               tttttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:4020059/128‑1 (MQ=255)
                                                                                               tttttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:586241/128‑1 (MQ=255)
                                                                                               tttttttttt‑tttt‑AAAAAAATATAATTTATTTTATT‑AAAATTATATTTATTTTT‑AATAAAAATTTAAAATAAATTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:3114318/128‑1 (MQ=255)
                                                                                               tttttttttt‑tttt‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:4264364/128‑1 (MQ=255)
                                                                                                ttttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑ATACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                                         <  1:1375602/128‑1 (MQ=255)
                                                                                                ttttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAAATTATATTTATGTTT‑AATAAAAATGTAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAATTATATAACAATGTAAGTTTTAAAactta                                         <  2:3712894/128‑1 (MQ=255)
                                                                                                ttttttttt‑tttt‑AAAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                                         <  1:2527705/128‑1 (MQ=255)
                                                                                                 tttttttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac                                        <  1:2451652/128‑1 (MQ=255)
                                                                                                 tttttttt‑tttt‑A‑AAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGATTTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact                                       <  1:100117/128‑1 (MQ=255)
                                                                                                     tttt‑tttt‑ATATATATATTATTTATTTGATT‑AAACTTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt                                    <  2:3628922/128‑1 (MQ=255)
                                                                                                      ttt‑tttt‑ACAAAAATATAATTTATTTGATT‑AAACGTTTTTTTATGTTT‑AAAAAAAATGGAAATGAAA‑TGTATTTTGCATAAATATTTATTTAAATTTTTAACAATTTAATTTTTAAAAATTAAttttt                                   >  1:4568028/1‑128 (MQ=255)
                                                                                                           ttt‑ACAAAAATATATTTTATTTGATT‑AAACGTATATTTTTTTTT‑ATTAAAATTGGATAAGAAATTGAATTTT‑CATAATAATTTATTTAAATATATAACAATTTAATTTTTAAAAATTACTtttttttt                               >  2:3668375/1‑128 (MQ=255)
                                                                                                            tttattaaaaTATAATTTATTTGATT‑AAAATTATATTTATTTTT‑AATAAAAATGTAAAAGAAAGTGAATTGT‑AATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt                               <  1:2834734/122‑1 (MQ=255)
                                                                                                              tattaaaaTATAATTTATTTGATT‑AAATTTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑AATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                             <  1:737733/124‑1 (MQ=255)
                                                                                                                  attttattatTTATTTGATT‑TTATTTTTTTTTATGTTT‑AATAATTATGGTATAGATAGTGAATTGT‑TATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttatt                         <  1:3238682/124‑1 (MQ=255)
                                                                                                                   tattattatTTATTTTATT‑ATTATTATTTTTATGTTT‑AATAAATATGTTATAGAATGTTTATTGT‑AATAATAATTTAATTATATATATAACTATTTAAGTTTTAAAACTTACTTTTTTGTTtttattt                        <  1:2187501/125‑1 (MQ=255)
                                                                                                                       ataATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTg                    >  2:2551927/1‑128 (MQ=255)
                                                                                                                        taATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGt                   <  2:4218221/128‑1 (MQ=255)
                                                                                                                         aaTTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATTGAAAAGAAATTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa                  <  2:305135/128‑1 (MQ=255)
                                                                                                                          atttatttGATT‑AAACGTATATTTATGTTT‑AATTAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATTTAAGATATAAAACTTACTTTTTTGTTTTTATTTACTGTaa                 >  2:3257774/1‑128 (MQ=255)
                                                                                                                             tatttGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAAc              >  2:3575418/1‑128 (MQ=255)
                                                                                                                             tatttGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAAc              >  2:178549/1‑128 (MQ=255)
                                                                                                                               tttGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:2960597/1‑128 (MQ=255)
                                                                                                                               tttGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  1:3901449/1‑128 (MQ=255)
                                                                                                                               tttGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:930280/1‑128 (MQ=255)
                                                                                                                               tttGATT‑AAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑AATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            <  1:2290356/128‑1 (MQ=255)
                                                                                                                                 tGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa          >  1:3764852/1‑128 (MQ=255)
                                                                                                                                 tGATT‑AAAAGTATATTTATGTTT‑AATAAAAATTGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa          <  1:4645656/128‑1 (MQ=255)
                                                                                                                                  taTT‑AATAGTATTTTTATTTTT‑AATAAATATTGTAAAGTAAGTGAATTTT‑ATTTATTATTTTTTTAAATTTTTAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaa         <  1:3008634/127‑1 (MQ=255)
                                                                                                                                   aTT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaaa        >  2:4041847/1‑128 (MQ=255)
                                                                                                                                       aaaCGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaaga     >  1:3595687/1‑128 (MQ=255)
                                                                                                                                          cGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAagaaga  >  2:722098/1‑128 (MQ=255)
                                                                                                                                          |                                                                                                                                 
AAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTATGCTCG‑‑‑TTT‑TTTTTTTTTT‑TTTT‑ACAAAAATATAATTTATTTGATT‑AAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGT‑CATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420149‑420405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑