Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816437,8820T.61.2% 565.4 / inf 952intergenic (‑186/+236)JCVSYN2_01985/JCVSYN2_01990glycosyl transferase/ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (187/179);  new base . (305/271);  total (492/460)
Fisher's exact test for biased strand distribution p-value = 5.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1393 total aligned reads displayed.

AAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437755‑438009
                                                                                                                                   |                                                                                                                               
    ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTATTG‑‑‑‑atatat                                                                                                                             >  1:769544/1‑128 (MQ=255)
     tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatata                                                                                                                            >  2:2506776/1‑128 (MQ=255)
      aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatat                                                                                                                           >  1:301574/1‑128 (MQ=255)
        ttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGATATGAAGCAAAGCAAAAACCTACATATTAACTATAGAGTTAATG‑‑‑‑atatatataa                                                                                                                         >  2:1314600/1‑127 (MQ=255)
         tttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatata                                                                                                                        >  1:2203003/1‑128 (MQ=255)
           tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAAATGTATTTTTAAAATAAATATATTAGGAAATGAAGCACATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatata                                                                                                                      <  2:3231984/128‑1 (MQ=255)
            gTAGTTGTAAGTTTCTTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGCAGCAAAGCATAAACCTCCTAATTACCTATAGAGTTAATG‑‑‑‑atatatatatttat                                                                                                                     >  1:2588230/1‑128 (MQ=255)
            gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatat                                                                                                                     <  2:579815/128‑1 (MQ=255)
              aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGATAATG‑‑‑‑atatatatatatatat                                                                                                                   <  2:220703/128‑1 (MQ=255)
              aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatat                                                                                                                   <  2:4534132/128‑1 (MQ=255)
               gtttttaGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTATAAAATAAATATTTTAGGAAATGAAGCAAATAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatata                                                                                                                  <  1:239371/122‑1 (MQ=255)
                 tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatata                                                                                                                >  2:3791231/1‑128 (MQ=255)
                 tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatata                                                                                                                >  1:3431884/1‑128 (MQ=255)
                  ttattagtaaTTTTTAAAATATATTAGATATAAAATTTGTATTTTTAAAAAAAATATTTTTGTATATTAACAACATATAAAATCTCTATATTAACTATAGAGTTAATT‑‑‑‑atatatatatatatatatat                                                                                                               <  1:574003/119‑1 (MQ=255)
                   tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatata                                                                                                              >  2:2572378/1‑128 (MQ=255)
                     aGTTTTATTTTTTATAAATATTAGAAATAAAAATTGTATATTTAAAATAAATATTTTAGTAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatata                                                                                                            <  2:2926646/128‑1 (MQ=255)
                      gTTTAATTTTATATATATATTAGAAATAAATTTTTTTTTTATATATTAAATATTTTTGTAAATTAATCATAACAAAAAACTCCATATTAACTATAGAGTTATTG‑‑‑‑atatatatatatatatataaattt                                                                                                           <  1:3771326/128‑3 (MQ=255)
                       tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGATGCAAAGCAAAAACCTCCATATTACATATATAGTTAATG‑‑‑‑atatatatatatatatatatattat                                                                                                          >  1:2148298/1‑125 (MQ=255)
                         tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatattcaag                                                                                                        >  2:924745/1‑123 (MQ=255)
                          cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGATATGAATCAAAGCAAAAACCTCGATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatgc                                                                                                       <  1:1532299/128‑3 (MQ=255)
                          cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatgc                                                                                                       <  1:426105/128‑3 (MQ=255)
                           aTTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAAACTCCATATTAACTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatgcaag                                                                                                      <  2:4617020/128‑6 (MQ=255)
                           aTTTTTAATAAATAATATAAATAAAAATTGTATTTTTAAAATAAAAATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAAG‑‑‑‑atatatatatatatatatatatatgcaag                                                                                                      <  1:321225/128‑6 (MQ=255)
                            tttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGCAAATAAAAAACCTCCATATTACATATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatatat                                                                                                     <  1:4640145/128‑3 (MQ=255)
                             ttttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatgcaag                                                                                                    <  2:4473912/128‑6 (MQ=255)
                              tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatataatcta                                                                                                   >  2:4342611/1‑123 (MQ=255)
                              tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatataatcaa                                                                                                   >  1:1617518/1‑123 (MQ=255)
                              tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatataaaagaga                                                                                                   >  1:3704658/1‑121 (MQ=255)
                              tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCaa                                                                                                   >  2:3624069/1‑128 (MQ=255)
                               ttAATATATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAATAAAAAAACTCAATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatatgcaagcg                                                                                                  <  1:400774/128‑8 (MQ=255)
                               ttAATAAATATTATATATAAAAATTTTTTTTTTAAAATAAATATTTTATGAAATTAATCAAATAAAAAACCTAAATATTACATATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAg                                                                                                  <  1:2914823/128‑1 (MQ=255)
                               ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATATTATGAAATGAAGCAAAGAAAAAACCTCAATATTAAATATAGAGTTAATG‑‑‑‑ataaatatatatatatatataaataatctccct                                                                                                  >  2:3140889/1‑120 (MQ=255)
                                taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGa                                                                                               >  1:957511/1‑128 (MQ=255)
                                 aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatatatgcaagcgatca                                                                                                >  2:3356696/1‑117 (MQ=255)
                                    aaataTTATAAATAAAAATTTTATATTTAAAATAAATATTTTAGGATAAGTAGAAAATAAAAAAACTCAATATTATATATATAGTTAATT‑‑‑‑atatatatatatatatatatatatatatatatatatca                                                                                             <  1:1876527/128‑11 (MQ=255)
                                    aaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatat                                                                                                                   >  1:2454065/1‑106 (MQ=255)
                                         ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCACAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATCTGCAAGCGATCAGCATaaaa                                                                                    >  1:3105130/1‑128 (MQ=255)
                                         taaGAAAAAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAAGAAAAAAACTCAATAATACCTATAGAGTTATT‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                      <  1:3958731/126‑1 (MQ=255)
                                          tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATAGATATATATATGCAAGCGATCAGCATa                                                                                       >  1:873025/1‑128 (MQ=255)
                                             aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                    <  2:2165435/128‑1 (MQ=255)
                                              aaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATgg                                                                                 <  2:405055/128‑1 (MQ=255)
                                               aaaaaaaaTTTATTTTTAAAATAAATATTTTATTATATTAAGAAAATCAAAAACCTAAATAATTACTATATAGTTAATGATATATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                      <  1:138114/126‑1 (MQ=255)
                                                tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATA‑AT‑CAAGATATCAAAATAAAATtgtg                                                                               >  1:1275454/1‑128 (MQ=255)
                                                 aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATAATC‑‑GCGCTCAGCATAATATGGTGa                                                                              >  1:4515330/1‑128 (MQ=255)
                                                   aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCCAGCGATCAGCAGATAATGGTGAAATTTa                                                                        >  1:3339632/1‑128 (MQ=255)
                                                    aaTAGTATATTTAAAATAAATATTTTTGGATATTATTCAAAGTAAAAACATCGATATTAACTATAGAGATATTG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                         <  2:1392512/128‑1 (MQ=255)
                                                      ttttATTTTTAAAATAAATATTTTATGAAATTAAGCTAAGCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                         <  1:1711062/125‑1 (MQ=255)
                                                       tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑atatatatatatatatatatata                                                                                                            >  2:2329349/1‑94 (MQ=255)
                                                         tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGAAAGAGATCAGCATAAAATGGTGAAATTTAGATc                                                                    >  2:518483/1‑128 (MQ=255)
                                                          aTTTTTAAAAAAAAAATTTTATGAAATGAAGCAAAGAAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGAt                                                                     <  1:2654612/128‑1 (MQ=255)
                                                           tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                    >  2:2825329/1‑128 (MQ=255)
                                                             tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATGCGAGCGATCAGCATAAAATTTTGAAATTTAGATCTGAGTTgg                                                            >  1:2350318/1‑128 (MQ=255)
                                                               tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATA‑‑AAAGAGATCAGCATAATATTGTGAAATTTAGATCTGAg                                                                >  1:4167395/1‑128 (MQ=255)
                                                               tAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATTGTGAAATTTAGATCTGAg                                                                >  2:3996443/1‑128 (MQ=255)
                                                                aaaaTAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                             <  2:3720223/128‑1 (MQ=255)
                                                                aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCTAGCGATCAGCATAAAATGGTGATATTTAGATCTGa                                                                 >  2:1223643/1‑128 (MQ=255)
                                                                aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTg                                                             <  2:32935/128‑1 (MQ=255)
                                                                    taaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑A‑‑‑A‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAAT‑GTGAAATTTAGATCTGAGTTGGTCtt                                                        <  2:4158564/128‑1 (MQ=255)
                                                                    taaataTTTTAGGAAAACAATCAAAGCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtcg                                                             <  1:100263/128‑3 (MQ=255)
                                                                     aaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTTCCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGATTAAAATTGTTAAATTTATATATTAGTTTGTCtt                                                        >  2:838935/1‑128 (MQ=255)
                                                                      aataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTata                                                     >  1:3278989/1‑126 (MQ=255)
                                                                       atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                        <  1:2798601/128‑1 (MQ=255)
                                                                        aatTTTAGTAAATGAAGCAAAGCAAACACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                     <  1:642174/127‑1 (MQ=255)
                                                                         atTTTATGAAATGAAGAAAATCAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                    <  2:1683642/128‑1 (MQ=255)
                                                                         atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGATAACAGCATAAAATTGTGAAATATAGATCTGATTTGGTAtt                                                        >  2:3446778/1‑128 (MQ=255)
                                                                           tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATAT‑T‑AAAGCTATAAGAATAAAATGGTGAAATATAGATATGAGTTGGTCTTAAAt                                                    >  2:4208274/1‑128 (MQ=255)
                                                                            ttATGAAATGAATCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAtt                                                   <  2:2764754/128‑1 (MQ=255)
                                                                                   aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTgg                                                            <  2:1998404/108‑1 (MQ=255)
                                                                                    tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATGGTGATATTTAGATCTGAGTTGGTATTAAATTTGTAtttt                                           >  1:4434910/1‑128 (MQ=255)
                                                                                        gcaatccaaaAAAATCCATATTACCTATAGAGATAA‑‑‑‑‑‑AGATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                       <  1:1785591/122‑1 (MQ=255)
                                                                                        gcaaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGAACAGCATAAAATGGTGAACTTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTttatttat                                   >  2:2399038/1‑128 (MQ=255)
                                                                                         cacagctaaAAGCTCGATAGTCCCTAGAGAGATAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                      <  1:1462643/125‑1 (MQ=255)
                                                                                         caaagcaaaTACAACAAAATTAAATATAGAGTTATAG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                        <  2:746055/128‑1 (MQ=255)
                                                                                         caaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCATCATAAAATGGTGAAATTTATATCTGAGTTTGTCTTAAATTAGTAGTTttta                                        >  2:105316/1‑128 (MQ=255)
                                                                                          aaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTTAGTTGGTCTTAAATTTGTATTTtttatat                                     >  2:2268185/1‑126 (MQ=255)
                                                                                           aagaaaaAAACTACATATTATATATAGAGATAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                      <  2:1464840/128‑1 (MQ=255)
                                                                                             gcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                  <  1:4577126/128‑1 (MQ=255)
                                                                                              caaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTTTAGTTTTTATTTATAg                                 >  2:1785591/1‑128 (MQ=255)
                                                                                              caaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                                 >  1:3598806/1‑128 (MQ=255)
                                                                                              caaaAACATCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                                 <  1:2718154/128‑1 (MQ=255)
                                                                                                aaaaCCTCAATATTACCTATAGAGTAAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                             <  2:1879277/128‑1 (MQ=255)
                                                                                                    ccTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTTAAATTTAGATCTGAGTTTGTATTAAATTTGTAGTTTTTATTTATAGTTtata                           >  2:1719286/1‑128 (MQ=255)
                                                                                                     cTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGGGAAATTTAGATATGAGTTGGTCTTAAATTTTTATTTTTTATTTATAGTTTATAAAGtt                      >  1:3875951/1‑128 (MQ=255)
                                                                                                      tcaatatTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCTAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTTTAGTTTATAAAtttt                     >  1:2075915/4‑127 (MQ=255)
                                                                                                      tCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                  <  2:3855263/89‑1 (MQ=255)
                                                                                                      tCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                           >  2:3509092/1‑128 (MQ=255)
                                                                                                        cATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGt                       >  2:2093603/1‑128 (MQ=255)
                                                                                                         atatTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                      <  2:656317/128‑1 (MQ=255)
                                                                                                          tatTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAATTGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                     >  1:1060121/1‑128 (MQ=255)
                                                                                                           atTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATTTTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                    >  1:198373/1‑128 (MQ=255)
                                                                                                            ttACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATA‑‑AAAGAGATCAGCATAAAATGGTTAAATATATATCTGACTTGGTCTAAAATTTGTAGTTTTTATATATAGTTTATAAATTtaat                   >  1:4086005/1‑128 (MQ=255)
                                                                                                            ttACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATAT‑T‑CAAGCTATCAGCATAATATGGTGAAATTTAGATCTGATTTGGTATTAAATTTGTATTTTTTATTTATAGTTTATAAATTtaat                   >  1:3516829/1‑128 (MQ=255)
                                                                                                            ttACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaat                   >  2:2694613/1‑128 (MQ=255)
                                                                                                             tACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTATTAAATTTGTTGTTTTTATTTATAGTTTATAAAGTtaata                  >  2:1128372/1‑128 (MQ=255)
                                                                                                             tACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTtttaat                >  1:2259520/1‑128 (MQ=255)
                                                                                                              aCCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaataa                 >  1:4384550/1‑128 (MQ=255)
                                                                                                                  ataGAGTTAATG‑‑‑‑ATATATATATATATATATATATATA‑‑‑‑CAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGa           <  2:1564147/128‑1 (MQ=255)
                                                                                                                   taGAGATAATG‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt              <  2:3010512/128‑1 (MQ=255)
                                                                                                                    agagTTAATG‑‑‑‑ATATA‑A‑ATATATATATATATATATATTCTAGCGATCAGCATAAAATGGTGAATTTTAGATCTGATTTGGTATTAAATTTATATTTTTTATTTATAGTTTATAAAGTTAATAAtatata           >  2:4279956/1‑126 (MQ=255)
                                                                                                                      agTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt         <  1:1188494/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                               
AAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437755‑438009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑