Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4800TA33.8% 315.6 / 172.9 465intergenic (+258/‑417)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (131/173);  new base A (56/99);  total (189/276)
Fisher's exact test for biased strand distribution p-value = 1.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 497 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597
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tagtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAt                                                                                                                          <  2:2865460/128‑1 (MQ=255)
tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAt                                                                                                                          <  1:1006288/128‑1 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTATTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATc                                                                                                                         >  2:3889360/1‑128 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATc                                                                                                                         <  1:3743515/128‑1 (MQ=255)
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑‑AAAAAAAAACAATcc                                                                                                                        <  2:2082200/128‑1 (MQ=255)
  gttaatttATTGTAAATTATAGAGTTAAGTTAAATTAAAATACAATAAACTTAATAATTCTTATAATTTAGATCCTAGTGATATATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  2:1973352/122‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  1:49587/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcc                                                                                                                        <  1:2525281/128‑1 (MQ=255)
   tGAAGTTTGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATccc                                                                                                                       <  1:891966/128‑1 (MQ=255)
   tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAATA‑AAAAAAAAAACAATcc                                                                                                                        <  2:601018/128‑1 (MQ=255)
    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑‑AAAAAAAAACAATCCCCt                                                                                                                     <  2:304611/128‑1 (MQ=255)
     aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATccaca                                                                                                                     >  2:3861505/1‑125 (MQ=255)
      aGTTATTTTATAAAATATATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTAGTTATCTATTTTTTTA‑TTTGTTTATCTTCACAAATAAAAAAAAAAAACAATcccc                                                                                                                      <  1:4410305/128‑1 (MQ=255)
       tttATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATATTCACAAAT‑‑AAAAAAAAAACAATCCCCtta                                                                                                                   <  1:1889196/127‑2 (MQ=255)
       gatAGTGTATATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCtta                                                                                                                   <  2:4228775/126‑2 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATccaattaa                                                                                                                  >  2:3625606/1‑122 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCAAAAAT‑‑AAAAAAAAAAAAAAccaataaa                                                                                                                  >  2:3608359/1‑122 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTATATAATCGTTATCTATTTTATTA‑TTATTTTATATAAAAAAAT‑‑AAAAAAAAAAAAATcaaattaa                                                                                                                  >  2:22461/1‑121 (MQ=255)
         tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATcaacttaaa                                                                                                                 >  2:3555210/1‑120 (MQ=255)
            tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑‑AAAAAAAAACAATCCCCttaaaaatt                                                                                                             >  1:3857548/1‑121 (MQ=255)
             gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCTATATCTATTTTATTA‑TTTATTTATATTAACAAAA‑‑AAAAAAAAAAAAATcaaattaaaaaaa                                                                                                             >  1:598631/1‑116 (MQ=255)
                 ataataGAGTTAAGGTTAATTAAAATACCATAATCTTAATAATTCTTATTATGTAGAACCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATCACCttaaaaatttaaa                                                                                                         >  1:2921265/1‑117 (MQ=255)
                 aaaaaaactttATGGTTTATTAAAATCACATTAAATTATAAATTATTATAATGTAGATCCTGGTGATCTTTTTTTTTA‑TTTGTTTATCATAAAAAAT‑‑AAAAAAAAAACAAACCCC‑‑Ttaa‑a‑a‑attaaaa                                                                                                    <  1:1046349/119‑1 (MQ=255)
                     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TTAA‑A‑A‑ATTaaaaaaaa                                                                                                >  1:564121/1‑128 (MQ=255)
                       tatttAATGTTAATTAAAATAAAAAAAAATTAAAAATTATTATAATTTATATCCTCGTTATATATTTTTTTA‑TTTTTTTATCTTAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaa                                                                                              <  2:3776911/125‑1 (MQ=255)
                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAACCAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaa                                                                                          >  2:3507753/1‑128 (MQ=255)
                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAAACCC‑‑TTAA‑A‑A‑AATaaaaaaaaaaaaaa                                                                                          >  1:3786196/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAATA‑AAAAAAAAAACAAT‑‑‑CAAATAA‑A‑A‑AATtaaaaaaaaaaaaaa                                                                                         >  2:345444/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATATTAACAAAT‑‑AAAAAAAAAACAATACCC‑‑ATAA‑A‑A‑ATTaaaaaaaaaaaaaaa                                                                                         >  1:2286924/1‑128 (MQ=255)
                             attttaaataaAATAAATTAAAATTAATAATTATTATAATTTATTTACTTGTGTTATATTTTTTTA‑TTTTTTTTTTTTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaa                                                                                        <  1:4222208/125‑1 (MQ=255)
                             agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTT‑TTTTTTTAAAATAAAAAAT‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaa                                                                                        <  1:4164608/125‑1 (MQ=255)
                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCAAC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaa                                                                                        >  2:2353481/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                       >  1:3942521/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACACC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                       >  1:4510811/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATCAC‑‑‑AAAA‑A‑A‑AATtaaaaaaaaaaaaaaaaa                                                                                      >  1:1446288/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATATTAACAAAT‑‑AAAAAAAAAAAAAACACC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                       >  1:1613993/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCAATTATTTAA‑AATAATAAAAATCAAAAAT‑‑AAAAAAAAAAACAAAACCaaaaaa‑a‑a‑aaaaaaaaaaaaaaaaaa                                                                                         >  1:2822810/1‑128 (MQ=255)
                               tgtaaataaaATAACAAAAAATTAAAAAATCTTAAAATTTAGTACCACCTTATCTATTTTTTTT‑TTTTTTTTTATTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaa                                                                                      <  1:4000603/126‑1 (MQ=255)
                               gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑ATTTTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCC‑‑‑ATAA‑A‑A‑AATaaaaaaaaaaaaaaaaaaa                                                                                     >  1:324255/1‑128 (MQ=255)
                                ttaattaaAAAAACAAAAAAATAATAAATATTATAAATTACATACTCTTGATCTAATTTTTTA‑TTTTTTTAAATTCAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaaa                                                                                     <  2:1910100/128‑1 (MQ=255)
                                 taattaaAATACCATAAACTTAATAAATCTTATAATGTATATACTCTTGATCTATATTTTTA‑TTTGTTTATCTTAACAAAT‑‑AAAAAAAAAAAAAAAAAATT‑‑‑A‑A‑A‑AATaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:2720797/1‑128 (MQ=255)
                                  aattaaAATACCATTAACTTAAATAATCTAATAAATTACATCCTAGTTCTATATTTTTTTA‑TTTTGTTATCTTAAAAAAT‑‑AAAAAAAAAAAAATCCCC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaacta                                                                                   <  2:4203095/128‑4 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTA‑ATTGAATATCATCAAAAAT‑‑AAAAAAAAAAAAATCAC‑‑‑ATAA‑A‑A‑AATaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  1:1332652/1‑127 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCAAAAAT‑‑AAAAAAAAAAAAAACCAC‑‑ATAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:3054378/1‑128 (MQ=255)
                                     taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCCC‑‑TAAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                >  1:3590036/1‑125 (MQ=255)
                                      aaaaaaACATAAACTTAATAAAAATTAAAATTTAAAAACACTTCATCTATTTTTTTA‑TTTTTTTAAATTAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                               <  2:1353635/128‑1 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTATA‑TTTGTATATCTTCACAAAT‑‑AAAAAAAAAACAAAACAC‑‑TTAA‑A‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  2:2647244/1‑123 (MQ=255)
                                         aaaacATAAAAATAATAATTATTTAAATTTTTATCCTCTTGATATATTTTTTTT‑TTTTTTTATATTCACAAA‑‑‑AAAAAAAAAAAAAACCCCTTAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAAAACTaaa                                                                              <  1:4137291/124‑1 (MQ=255)
                                          tACCATAAAATTAATAAATATTAAAATTTTTATCCTTGTTTTATATTTTTTTA‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑TTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                            <  2:3801282/128‑1 (MQ=255)
                                            gcaaaaaattaaaaattaTTAAAATTTATATCCACGTTATATATTTTTTTA‑TTTTTTTAAATACAAAAAA‑‑AAAAAAAAAACAATCCCC‑TTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                          <  2:2402113/124‑1 (MQ=255)
                                            ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         >  1:4064129/1‑128 (MQ=255)
                                            aaataaaataaaTAATTTTTTAAATTTATATCCTCGTTTTATATTTTTTTT‑TTTTTTTATCTTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         <  1:3555210/126‑1 (MQ=255)
                                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCACCTTAAAA‑A‑T‑TAAAAAAAAAAAAAAAAAAAAAAAATaaaaaaa                                                                          >  1:2404154/1‑126 (MQ=255)
                                             cATAAAATTAATAATTTTTATAAATTATAAAAACTTTTTATATTTTTTTT‑ATTTTTTAAATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                        <  2:3952403/128‑1 (MQ=255)
                                             aaTAAACTTAATAATAATTATAATCAAGATCCTCGAGATCTATTATTTTA‑TTTTTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACAAC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAAATAaaaaaaaa                                                                        >  1:3610728/2‑128 (MQ=255)
                                                aaaaataataaTTCTTATAATTTACATCCATGTGATATATTTTTTTA‑TTTGTTTTTCTTCAAAAAT‑‑AAAAAAAAAACAATCCCCTT‑‑‑A‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:2469670/123‑1 (MQ=255)
                                                  acataataaTTATTTTAAATTTTATACTAGTTATATATTTTTTTA‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAACCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                  <  1:2100871/125‑1 (MQ=255)
                                                  aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTT‑TTTTTTTATCTTAAAAAAT‑‑AAAAAAAAAACAATACCCTT‑‑‑A‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                 <  2:1712125/124‑1 (MQ=255)
                                                    ttAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAACT‑‑AAAAAAAAAA‑AATCCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAAAATAaaacaacaatcttta                                                                >  1:2344637/1‑119 (MQ=255)
                                                         aatTATTAAAATTTACATACTCGTTAAATATTTTTTTA‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATCCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCttca                                                           <  2:4467436/128‑3 (MQ=255)
                                                           tttatataATTTATATACTCGTTATCTTATTTTTTA‑TTTGTTTATCTTAACAAAT‑‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                        <  2:4139324/124‑1 (MQ=255)
                                                              taaaaaTTTAGAAACTTGTGATATTTTTTTTTT‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                      <  2:1525284/124‑1 (MQ=255)
                                                               tataATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACACTCCCC‑‑‑TGA‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACAAAAAACAAACAATATTTCTAAAAAATcac                                                    >  1:4262252/1‑126 (MQ=255)
                                                                 taAAGTAGATCATATTTATATATTTTTTTA‑TTTTTTTTTCTTAACAAAT‑‑AAAAAAAAAACAATCCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                   <  2:1615650/128‑1 (MQ=255)
                                                                    tGTATATCCACGTTATCTATTTTTTTA‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                 <  2:4363234/128‑1 (MQ=255)
                                                                      tttataatcttGATATTTTTTTTTT‑TTTTTTTTTAATAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                               <  2:566975/118‑1 (MQ=255)
                                                                         ttaatCGTTATATAATTTTTTA‑TTTTTTTATAATAAAAAAT‑‑AAAAAAAAAAAAAAACCC‑TTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                             <  1:3506968/124‑1 (MQ=255)
                                                                         tatcaatagttttatttttttattttttTTTTATTAAAAAAT‑‑AAAAAAAAAAAAATCCCC‑TTAAA‑A‑A‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                              <  2:947042/116‑1 (MQ=255)
                                                                          accTTGTTATCTAATTTTTTA‑TTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAATACCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  2:4184121/127‑1 (MQ=255)
                                                                          aacaatttatatattttttta‑ttttttTAAATTAAAAAAA‑‑AAAAAAAAAACAAACCCCTT‑‑‑A‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:454873/117‑1 (MQ=255)
                                                                           cttctttttttttttttttA‑TTTGTTTATTTTTAAAAAA‑‑TAAAAAAAAAAAATACCAAT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  1:3889573/116‑1 (MQ=255)
                                                                           atattgataatATTTTTTTA‑TATTTTATTTTTAAAAAAA‑‑AAAAAAAAAAAAAAACCCTTAAAA‑A‑T‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                            <  2:1154366/118‑1 (MQ=255)
                                                                            cattttatattttttttta‑tttttttaTATTAACAAAA‑‑AAAAAAAAAAAAATAACC‑‑TTAA‑A‑A‑ATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:1584294/117‑1 (MQ=255)
                                                                            cTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTTTAAATATTCTCTATTATAcacaa                                        >  1:4106031/1‑124 (MQ=255)
                                                                            aatgttatataattttttA‑ATTTTTTATATTCAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑ATAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:2517119/116‑1 (MQ=255)
                                                                             cgtttatatATTTTTTTA‑TATTTATATCTAAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑AA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                       <  1:983545/120‑1 (MQ=255)
                                                                              tttttttattttttttA‑TTT‑TTTATATTAAAAAAA‑‑AAAAAAAAAAAAAT‑ACCATTTAA‑A‑A‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                       <  2:1451069/119‑1 (MQ=255)
                                                                              tgtttattttttttttA‑TTT‑TTTAAAATAAAAAAA‑‑AAAAAAAAAAAAAACACCTTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:4264790/119‑1 (MQ=255)
                                                                               tttatatattttttta‑ttttttTAAATAAAAAAAA‑‑AAAAAAAAAACAATCCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  2:3338378/122‑1 (MQ=255)
                                                                                 ttttatttttttta‑ttt‑tttttatTAACAATT‑‑AAAAAAAATATTATTACCTTATAA‑A‑T‑TA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACATACTCTATTTCTTAATTTTCGCTATTATACCACatttt                                    <  2:3700016/122‑1 (MQ=255)
                                                                                  ttatATTTTTTTT‑TTTTTTTATATAAAAAAAT‑‑AAAAAAAAAAAAAAACCC‑ATAAA‑T‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  2:872565/125‑1 (MQ=255)
                                                                                  aTCAATTTTTTTA‑TTTTTTTAACTTCAAAAAT‑‑AAAAAAAAAAAAAAACCCTTAAAA‑A‑T‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:4020847/128‑1 (MQ=255)
                                                                                   tatattttttta‑ttttttTATATTAACAAAA‑‑AAAAAAAAAAAAAACCATTAAAAATA‑A‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:4077076/126‑1 (MQ=255)
                                                                                   tatattttttta‑ttttttTAAATTAAAAAAA‑‑AAAAAAAAAAAAAT‑ACCATTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  2:1785856/126‑1 (MQ=255)
                                                                                    attttttttta‑tttttttaTATTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑ATAA‑A‑A‑AAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  2:2594563/125‑1 (MQ=255)
                                                                                     aaTTTTTTAA‑TTTTTTTAATTACAAAAAA‑‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACattttatttt                               <  1:3418638/127‑1 (MQ=255)
                                                                                      aattttttt‑tttttttATTATTAAAAAA‑‑AAAAAAAAAAAAAAACCCTTT‑‑A‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                              <  2:505055/126‑1 (MQ=255)
                                                                                        ttttttA‑TTTGTTTATATTAAAAAAT‑‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  2:1234723/128‑1 (MQ=255)
                                                                                         tttttA‑ATTTTTTATCTTAAAAAAA‑‑AAAAAAAAAAAAAAACCCTTAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:168887/128‑1 (MQ=255)
                                                                                          ttttt‑tttttttATTTTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑ATAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                           <  1:1096133/128‑1 (MQ=255)
                                                                                           tttA‑TTTTTTTATATTCACAAA‑‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                         <  1:2645154/128‑1 (MQ=255)
                                                                                            ttA‑TTTTTTTATATTAAAAAAT‑‑AAAAAAAAAA‑AATAACCATTT‑A‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                         <  1:17293/128‑1 (MQ=255)
                                                                                               tttttttTATATTAACAAAA‑‑AAAAAAAAAAAAATCCCC‑‑TTAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  1:4361674/127‑1 (MQ=255)
                                                                                                 ttttttATATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAA‑A‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                     <  1:3657769/125‑1 (MQ=255)
                                                                                                  tttttATATTTAAAAAA‑‑AAAAAAAAAAAAAAAACC‑TTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                     <  1:4586295/126‑1 (MQ=255)
                                                                                                    tttaaattaaaaaaT‑‑AAAAAAAAAAAAATCACATT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:1074105/117‑1 (MQ=255)
                                                                                                    tttATATTAAAAAAT‑‑AAAAAAAAAAAAAACACATT‑‑‑A‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  1:3473843/128‑1 (MQ=255)
                                                                                                    ttaaaaataaaaaaa‑‑aaaaaaaaaaaaATCAC‑‑ATTAA‑A‑A‑AA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:2182362/117‑1 (MQ=255)
                                                                                                      ttaattaaaaaaa‑‑aaaaaaaaaaaaATAACC‑TTAAA‑A‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:3229023/119‑1 (MQ=255)
                                                                                                              caAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata        <  2:3728044/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                        
TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAA‑A‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑