Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA38.5% 332.5 / 92.3 412intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (99/133);  new base A (48/97);  total (157/255)
Fisher's exact test for biased strand distribution p-value = 6.62e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 471 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597
                                                                                                                                 |                                                                                                                     
 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTAACTTCACAAAT‑AAAAAAAAAAAAATc                                                                                                                       >  2:3779293/1‑128 (MQ=255)
  gttaaGTTATTGTAAATAATAGAGTTAAGTTTAATTATAATACTATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                      <  2:2659607/125‑1 (MQ=255)
  gtGAAGTTAGTTTTAATTATAGAGTTATTGTTAATTAAAATAACTTAAACTTAAAACTTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTCTATATCTTCACAAAA‑AAAAAAAAAACCATcc                                                                                                                      <  2:2553700/128‑1 (MQ=255)
  gtGAAGTTAGTGTAAAAAATAGAGTCAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                      <  1:485138/128‑1 (MQ=255)
   tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAAAAAAccc                                                                                                                     >  2:3889573/1‑128 (MQ=255)
    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcccc                                                                                                                    <  2:4458447/128‑1 (MQ=255)
     aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                   <  2:2982421/128‑1 (MQ=255)
      attttttgtAAATAATAGAGTTAATGTTAATTAAAATTCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                  <  1:1068333/122‑1 (MQ=255)
       gTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATCACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACCCtaa                                                                                                                 >  1:4144966/1‑126 (MQ=255)
       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATATATTTATCTTCACAAAT‑AAAAAAAAAAAAATaccataa                                                                                                                 >  2:841412/1‑124 (MQ=255)
        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTAATTATTTATTTATTTATATTCACAAAT‑TAAAAAAAAACAATcaacttaa                                                                                                                >  1:2028124/1‑121 (MQ=255)
           gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATATTCAAAAAT‑AAAAAAAAAACAAACACCtaaaaaa                                                                                                             >  1:2594563/1‑122 (MQ=255)
                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTATATATATATTTTATTAATTTTTTATATTCACAAAT‑AAAAAAAAAACAATACCAttaaaaattaaa                                                                                                        >  2:92315/1‑118 (MQ=255)
                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAttaaaaattaaa                                                                                                        >  2:365328/1‑118 (MQ=255)
                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCttaaaaataaaa                                                                                                        >  2:3611693/1‑118 (MQ=255)
                 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaa                                                                                                    >  2:3878536/1‑128 (MQ=255)
                     taatgttttgtttaattaaAATTAAAAAAAATTTATTATTATTTTAATGTATTTCACTGTTTTATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AA‑AATTaaaaaaaa                                                                                                <  1:3528670/117‑1 (MQ=255)
                      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGTGATCTATTATTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑‑AAAA‑AAATtaaaaaaaaa                                                                                              >  2:203308/1‑128 (MQ=255)
                         gatAAGGATAATTAAAATACCATAAACATAATAATTCTAAAAAATAAAAACCTCGTGAACTAATTTTTAAATTGTTAATCATAACAAAA‑AAAAAAAAAACAAACCAC‑‑AAAAA‑AAATaaaaaaaaaaaa                                                                                            >  1:3700016/3‑128 (MQ=255)
                         gTTAAGTTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTATATAATATTAATCTATATTATTATTAGATAATATTAACAAAT‑AAAAAAAAAAAAAT‑‑‑CAAATAAA‑AAATaaaaaaaaaaaaa                                                                                           >  1:1641002/1‑128 (MQ=255)
                         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaa                                                                                            >  1:3503286/1‑128 (MQ=255)
                         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaa                                                                                           >  2:3453644/1‑128 (MQ=255)
                         gTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCC‑‑‑AAAAA‑AAATaaaaaaaaaaaa                                                                                            >  1:3107526/1‑128 (MQ=255)
                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                          >  2:2598547/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAAT‑AAAAAAAAAACAATACCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  1:2286924/1‑128 (MQ=255)
                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                        >  1:3568338/1‑128 (MQ=255)
                             attttaaataaAATAAATTAAAATTAATAATTATTATAATTTATTTACTTGTGTTATATTTTTTTATTTTTTTTTTTTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                        <  1:4222208/125‑1 (MQ=255)
                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaa                                                                                        >  1:1014407/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTAAATTATTATTATAATATCTACACAAAT‑AAAAAAAAAAAAAAAAAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                       >  1:924567/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                       >  1:3942521/1‑128 (MQ=255)
                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAAACAAACAC‑‑AAAAA‑AAATtaaaaaaaaaaaaaaaa                                                                                       >  1:540409/1‑128 (MQ=255)
                               tttaaataaAATACCATAAAATATAAAATTATTAAAAAGTTATTCCTCGTTTTCTATTTTTTTTTTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                      <  1:1477003/127‑1 (MQ=255)
                               tgtaaataaaATAACAAAAAATTAAAAAATCTTAAAATTTAGTACCACCTTATCTATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                      <  1:4000603/126‑1 (MQ=255)
                               gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                      >  2:470120/1‑128 (MQ=255)
                                  aattaaAATACCATTAACTTAAATAATCTAATAAATTACATCCTAGTTCTATATTTTTTTATTTTGTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaacta                                                                                   <  2:4203095/128‑4 (MQ=255)
                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:3809202/1‑128 (MQ=255)
                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAATCCC‑CTTAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:4222277/1‑128 (MQ=255)
                                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAACCATaaaaa‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:1418124/1‑128 (MQ=255)
                                     taaaaaaaaaTAAAATTAATAATTATTATAATTTATAAAATATTTTTCTTTTTTTTTATTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                <  2:2239495/119‑1 (MQ=255)
                                       aaaaACAATAAAATTAATAATTATTATAATTTATATCCAAGTGTTATATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                              <  1:1177566/128‑1 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCAC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                               >  2:526045/1‑124 (MQ=255)
                                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  1:3803977/1‑123 (MQ=255)
                                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACC‑‑ATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                             >  1:294470/1‑128 (MQ=255)
                                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAA‑ACAAACAAATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  2:3604813/1‑123 (MQ=255)
                                         aaaCCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATATATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                           <  1:4189486/126‑1 (MQ=255)
                                            ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         >  1:4064129/1‑128 (MQ=255)
                                            caaTAAAATTAAAAATTATTATAATTTTTATTATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         <  1:3745850/126‑1 (MQ=255)
                                            acaaaaaCATAAAAATTATTATAATTTATTTCATCGTTATTTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                        <  1:3861505/124‑1 (MQ=255)
                                            aaaaaaaaattataatTATTATAATTTTTATACCCCTTATATATTTTATTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                          <  1:2404818/117‑1 (MQ=255)
                                            aaaaaaaCTTAAAAATTATTATAATTTATATAATCTTTTATTATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                          <  2:2506967/124‑1 (MQ=255)
                                             cATAAACTTAATAAGTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTACAAATTAAAAAAAAAAAAAACACAAAAAAACtcacaaa                                                                           >  1:2349277/1‑122 (MQ=255)
                                             aaaaaaaTTAAAAATTTTTATAATTTTTTACCTTGTTTTTTATTTTTTTATTTTTTTTATTTTAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                       <  1:270471/125‑1 (MQ=255)
                                                 aaattAATAATTTATAAAATGTATATACTCCTGTAATAATTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCACTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:4260752/125‑1 (MQ=255)
                                                 aaaataataaATATTATAATGTATATCCACCTGATATATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:4038178/124‑1 (MQ=255)
                                                  aataaataatTCTTATAATTTATATACTCGTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                 <  2:1712125/124‑1 (MQ=255)
                                                           tttatataATTTATATACTCGTTATCTTATTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                        <  2:4139324/124‑1 (MQ=255)
                                                           ttattATAATTTATATAATCGTTTTTTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                           <  1:3467847/125‑1 (MQ=255)
                                                              taaaaaTTTAGAAACTTGTGATATTTTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                      <  2:1525284/124‑1 (MQ=255)
                                                               tataATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACACTCCCC‑‑‑TGAA‑AAAT‑TAAAAAAAAAAAAAAAAAAACAAAAAACAAACAATATTTCTAAAAAATcac                                                    >  1:4262252/1‑126 (MQ=255)
                                                                 taAAGTAGATCATATTTATATATTTTTTTATTTTTTTTTCTTAACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                   <  2:1615650/128‑1 (MQ=255)
                                                                        tatcatctttaTCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATTCACTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                           <  2:3227201/118‑1 (MQ=255)
                                                                         ctCCTCTTTATATAATTTTTTAATTTTTTAATTTAAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                             <  2:1318964/127‑1 (MQ=255)
                                                                          accTTGTTATCTAATTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  2:4184121/127‑1 (MQ=255)
                                                                          acaaatttataaatttttttatttttttAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                           <  2:4519748/116‑1 (MQ=255)
                                                                           cttctttttttttttttttATTTGTTTATTTTTAAAAAA‑TAAAAAAAAAAAATACCAAT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  1:3889573/116‑1 (MQ=255)
                                                                           ctctttttttatttttttaATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  1:3625606/116‑1 (MQ=255)
                                                                           cgtcggtttatttttttttATTTGTTTATATTAACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  1:581766/116‑1 (MQ=255)
                                                                           atttttatttattttttttattt‑tttttatTAAAAAAA‑AAAAAAAAAAAAATACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                           <  2:4358255/116‑1 (MQ=255)
                                                                           atattgataatATTTTTTTATATTTTATTTTTAAAAAAA‑AAAAAAAAAAAAAAACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                            <  2:1154366/118‑1 (MQ=255)
                                                                            cattttatatttttttttatttttttaTATTAACAAAA‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                         <  2:1584294/117‑1 (MQ=255)
                                                                              tttttttattttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAT‑ACCATTTAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                       <  2:1451069/119‑1 (MQ=255)
                                                                               ttgaagtaattttttATTTGTTTAACATAAAAAATAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:4101764/119‑1 (MQ=255)
                                                                               tgtataaaTTTTTTTAATTTTTAATATTAAAAAAA‑AAAAAAAAAAAAAACCAC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  1:4544598/121‑1 (MQ=255)
                                                                                 tatttATTTTTTTTTTTTTTTTTTTTAAAAAAA‑AAAAAAAAAAAAATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  1:2826328/124‑1 (MQ=255)
                                                                                   tatatttttttattttttTAAATTAAAAAAA‑AAAAAAAAAAAAAT‑ACCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  2:1785856/126‑1 (MQ=255)
                                                                                   aattattttttATTTGTTTATAATAAAAAAA‑TAAAAAAAAAAAAT‑CCCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  2:2388517/123‑1 (MQ=255)
                                                                                      ttttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  2:3294805/127‑1 (MQ=255)
                                                                                       ttttttttttTGTTTTTAGTAAAAAAT‑AATAAATAAACATATCCC‑‑TTAAA‑ATTTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                              <  2:2315927/128‑1 (MQ=255)
                                                                                       attttttatttttttatCTTTAAAAAT‑AAAAAAAAAAAAATACCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  2:3528662/127‑1 (MQ=255)
                                                                                        ttttttATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  2:1234723/128‑1 (MQ=255)
                                                                                        ttttttATTTGGTTAATAAAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  1:4500833/128‑1 (MQ=255)
                                                                                        tttttaAATTTTTTATAATCAAAAAA‑AAAAAAAAAAAAATACCC‑TAAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTAttttt                              <  2:588515/128‑1 (MQ=255)
                                                                                         tttttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAA‑‑AACAATTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  1:3414657/128‑1 (MQ=255)
                                                                                         tttttATTTTTTAATCTTAAAAAAA‑AAAAAAAAAACAAAACACAT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                           <  1:4394086/128‑1 (MQ=255)
                                                                                          ttttATTT‑TTTAAATTCAAAAAT‑AAAAAAAAAAAAAACCAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                          <  2:2810827/128‑1 (MQ=255)
                                                                                           tttATTTTTTAATTTAAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑‑TAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                        <  1:1739004/128‑1 (MQ=255)
                                                                                              tttttttTATATTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  1:4361674/127‑1 (MQ=255)
                                                                                              aattGTTTATTTTAACAAAT‑AAAAAAAAAAAAATTCC‑‑ATTAAA‑TATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  2:212776/126‑1 (MQ=255)
                                                                                              aTTTGTTTAAATTCAAAAAT‑AAAAAAAAAAAAAAACCATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                      <  1:4104980/128‑1 (MQ=255)
                                                                                               attttttATCTTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                     <  2:3717901/124‑1 (MQ=255)
                                                                                                ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTATATTTATTAAAATTACCTTATATAAAAAATTTTTTTTTTAaaaaaata                     >  2:2430266/1‑126 (MQ=255)
                                                                                                   tttaaattaaaaaaT‑AAAAAAAAAAAAATCACATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  2:1074105/117‑1 (MQ=255)
                                                                                                     tatttaaaaaaaT‑AAAAAAAAAA‑AATAATCTATAAAA‑ATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                <  1:3602353/119‑1 (MQ=255)
                                                                                                     aaaattaaaataT‑AAAAAAAAAAAAAT‑TACATTAAAA‑AATTAAAATAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATAtt                 <  2:3977603/117‑1 (MQ=255)
                                                                                                      taaatataaaaa‑aaaaaaaaaaaaaaaaCCCATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                 <  1:764708/120‑1 (MQ=255)
                                                                                                      atttataaaaaT‑AAAAAAAAAAAAAT‑TCATATAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                <  1:1701361/120‑1 (MQ=255)
                                                                                                        cttataaaaT‑AAAAAAAAAAAAATAGAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa             <  2:1953107/122‑1 (MQ=255)
                                                                                                                 attaaaaaaaaaCAAT‑TACATTTAAA‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata      <  2:35017/125‑1 (MQ=255)
                                                                                                                   aaaaaaaaaaaaAT‑ACCATTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatt    <  2:3756999/128‑2 (MQ=255)
                                                                                                                    aaaaaaaaaaaaTACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc  <  2:1906583/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                     
TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202353‑202597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑