Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.72.8% 394.4 / inf 386intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (12/78);  new base . (108/133);  total (139/247)
Fisher's exact test for biased strand distribution p-value = 4.06e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.11e-01

Only 100 of 415 total aligned reads displayed.

GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202357‑202609
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gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCCt                                                                                                                                <  2:304611/128‑1 (MQ=255)
  attttttgtAAATAATAGAGTTAATGTTAATTAAAATTCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                               <  1:1068333/122‑1 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAACCCtt                                                                                                                               >  1:2423656/1‑128 (MQ=255)
   tttATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                              <  1:1889196/127‑2 (MQ=255)
         gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACTTaaaaaat                                                                                                                      >  1:4230726/1‑127 (MQ=255)
            aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTATATATATATTTTATTAATTTTTTATATTCACAAATAAAAAAAAAACAATACCAttaaaaattaaa                                                                                                                     >  2:92315/1‑118 (MQ=255)
            aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACCAttaaaaattaaa                                                                                                                     >  1:4519748/1‑118 (MQ=255)
                 taatgttttgtttaattaaAATTAAAAAAAATTTATTATTATTTTAATGTATTTCACTGTTTTATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCCTTT‑‑AAAATTaaaaaaaa                                                                                                            <  1:3528670/117‑1 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCACC‑‑ttaaaaattaaaaata                                                                                                             >  2:3890094/1‑126 (MQ=255)
                  agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGTGATCTATTATTTTATTTGTATATCTTCACAAATAAAAAAAAAACAATCCAC‑‑‑AAAAAAATtaaaaaaaaa                                                                                                          >  2:203308/1‑128 (MQ=255)
                  agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                           >  1:4366171/1‑128 (MQ=255)
                     gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCACCTT‑‑‑AAAAATaaaaaaaaaaaaa                                                                                                       >  2:3453644/1‑128 (MQ=255)
                     gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAATAAAAAAAAAAAAATAAAC‑‑ATAAAAAATaaaaaaaaaaaa                                                                                                        >  2:2240283/1‑128 (MQ=255)
                     gTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCC‑‑‑AAAAAAAATaaaaaaaaaaaa                                                                                                        >  1:3107526/1‑128 (MQ=255)
                      ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                       >  2:3702939/1‑128 (MQ=255)
                      ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATAAC‑‑ATTAAAAATTaaaaaaaaaaaaa                                                                                                       >  2:4456498/1‑128 (MQ=255)
                      ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                       >  1:4492178/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                      >  1:3776911/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTAATATGTTTATCTTCACAAAAAAAAAAAAAAAAATACAC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  2:4217448/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:3933503/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                    >  1:1726380/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3568338/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                     >  1:2363633/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    >  2:2353481/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                    >  1:1014407/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAATTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑‑TAAAAAATttaaaaaaaaaaaaaaaa                                                                                                  >  1:4113231/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTAAATTATTATTATAATATCTACACAAATAAAAAAAAAAAAAAAAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                   >  1:924567/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTGTATTTTTATCTTCACAAATAAAAAAAAAAAAAATAAC‑‑ATAAAAAATtaaaaaaaaaaaaaaaa                                                                                                   >  2:1270883/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAA‑‑AAAAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                   >  2:1358843/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                    >  1:3868150/1‑128 (MQ=255)
                           gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                  >  2:470120/1‑128 (MQ=255)
                           gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                  >  2:3982529/1‑128 (MQ=255)
                           gTTAATTAAAATAACATAAAAATAAAAAATAAAAAAAATAATAACCCCGTTAACTAATTTTTTATTTTTATATATACACAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                  <  2:1231570/128‑1 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATAACC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:2607028/1‑128 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCCTaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:2907970/1‑128 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:3611916/1‑128 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTATTTATATTCACAAATAAAAAAAAAAAAAAACCCAaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2400814/1‑128 (MQ=255)
                             taattaaAATACCATAAACTTAATAAATCTTATAATGTATATACTCTTGATCTATATTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAAAAAATT‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:2720797/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTAATTGAATATCATCAAAAATAAAAAAAAAAAAATCAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:1332652/1‑127 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:566975/1‑128 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACCAATACAC‑‑TTAAAAATTaaaaaaaaaaaaaaaacaaaca                                                                                              >  1:2308361/1‑126 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4026748/1‑127 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4192268/1‑127 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACAATAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:2155504/1‑128 (MQ=255)
                                  aaaaaaACAAAAACTTAAAAATTTTTAAATATTATATACTCTTTTTATTTTTTTTTTTTTTTTTAATTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAACTaaa                                                                                          <  1:3851820/128‑1 (MQ=255)
                                  aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTTTATATCTTCACAAATAAAAAAAAAACAATAAC‑‑ATAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:2957417/1‑124 (MQ=255)
                                   aaaTACCATAAACTTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTATATTTGTATATCTTCACAAATAAAAAAAAAACAAAACAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2647244/1‑123 (MQ=255)
                                    aaTACAATAAAATTAATAATTTTTTTAATTTTTATTATTTTTTTTTTTTTTTTTATTTTTTTTTTTTAAAAAATATAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                         <  1:671225/128‑1 (MQ=255)
                                      tACCATAAAATTAATAAATATTAAAATTTTTATCCTTGTTTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                        <  2:3801282/128‑1 (MQ=255)
                                        acATAAAATTAATAATTCTTATAATTTTTATACTATTTTTATTTTTTTTTATTTTTTTTTCTTAAAAAATAAAAAAAAAACAATCTCATT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                 <  1:4087675/127‑1 (MQ=255)
                                        aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTTTTTTTTTTATTCAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  1:1654674/124‑1 (MQ=255)
                                        aaaaaaaCTTAAAAATTATTATAATTTATATAATCTTTTATTATTTTTTTATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                      <  2:2506967/124‑1 (MQ=255)
                                             aaaataataaATATTATAATGTATATCCACCTGATATATTTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                               <  2:4038178/124‑1 (MQ=255)
                                              aattAATAATTATTATAATTTATATAATATTGTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                               <  2:1073690/126‑1 (MQ=255)
                                                      aatattATAATTTATATCCTCGTTTTTTATTTTTTTATTTTTTTATCATCACAAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                         <  2:4195977/124‑1 (MQ=255)
                                                       tttttATAATTTAGATACTTGTTTTTTATTTTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                    <  2:4122518/125‑1 (MQ=255)
                                                       ttattATAATTTATATAATCGTTTTTTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                       <  1:3467847/125‑1 (MQ=255)
                                                          taaaaaTTTAGAAACTTGTGATATTTTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                                  <  2:1525284/124‑1 (MQ=255)
                                                           tataATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACACTCCCC‑‑‑TGAAAAATTAAAAAAAAAAAAAAAAAAACAAAAAACAAACAATATTTCTAAAAAATcac                                                                >  1:4262252/1‑126 (MQ=255)
                                                             taAAGTAGATCATATTTATATATTTTTTTATTTTTTTTTCTTAACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                               <  2:1615650/128‑1 (MQ=255)
                                                                   ttaTCCTCGTGTTATTTTTTTTTATTTTTTTAAATTAACAAAAAAAAAAAAAAAAAAACCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                           <  2:579645/126‑1 (MQ=255)
                                                                   atataatCGTTATATATTTTTTTATTTTTTTAAATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                          <  2:1141826/122‑1 (MQ=255)
                                                                       ccTCGTTATCTTTTTTTTTATTTTTTTTTCTTAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                      <  2:3758911/128‑1 (MQ=255)
                                                                       atttttatttattttttttattttttttatTAAAAAAAAAAAAAAAAAAAATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                       <  2:4358255/116‑1 (MQ=255)
                                                                        cattttatatttttttttatttttttaTATTAACAAAAAAAAAAAAAAAAATAACC‑‑TTAAAAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                     <  2:1584294/117‑1 (MQ=255)
                                                                        atctttattatttttttttttttttTAAAATTAAAAATAAAAAAAAAAAAATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                       <  2:2449379/117‑1 (MQ=255)
                                                                          tgtttattttttttttATTTTTTAAAATAAAAAAAAAAAAAAAAAAAAACACCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                     <  2:4264790/119‑1 (MQ=255)
                                                                           tttttaaatttttttatttttttATATTAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                    <  2:251996/121‑1 (MQ=255)
                                                                           tttatatatttttttattttttTAAATAAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                  <  2:3338378/122‑1 (MQ=255)
                                                                            ttatttatttttttattttttTAAATTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:1768176/123‑1 (MQ=255)
                                                                            cttatttattttttATATTTTATATATTCTAAAAAAAAAAAAAAAAAAAACCCATT‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                  <  1:460843/120‑1 (MQ=255)
                                                                              atatatttttttattttttAATAATAAAAAAAAAAAAAAAAAAAATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:4230726/125‑1 (MQ=255)
                                                                               tatatttttttattttttTATATTAACAAAAAAAAAAAAAAAAAACCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                 <  2:4077076/126‑1 (MQ=255)
                                                                                 tatttttttattttttTATATTAACAAATAAAAAAAAAAAAATACCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:519172/128‑1 (MQ=255)
                                                                                 attttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                          <  2:81244/126‑1 (MQ=255)
                                                                                  ttttttttATTTTTTATATTAAAAAAAAAAAAAAAAAAAATTCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  2:41814/127‑1 (MQ=255)
                                                                                  ttttttttAATTTTTTATCTTAACAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                           <  2:3590036/127‑1 (MQ=255)
                                                                                    ttttttatttttttatTTAAAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                         <  1:3486265/128‑1 (MQ=255)
                                                                                     tttttATTTTTTTATATTAAAAAAAAAAAAAAAAAAAA‑‑AACAATTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  1:3414657/128‑1 (MQ=255)
                                                                                      ttttttttttttATTTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                       <  1:1096133/128‑1 (MQ=255)
                                                                                      ttttttttttttATATTTAAAAAAAAAAAAAAAAAAAAAACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  2:454185/128‑1 (MQ=255)
                                                                                      ttttATTTTTTTATATTAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                     <  1:3717520/128‑1 (MQ=255)
                                                                                       tttATTTTTTTATATTAAAAAATAAAAAAAAAAAAAAACACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                        <  2:3520599/128‑1 (MQ=255)
                                                                                             ttttttATCTTAAAAAAAAAAAAAAAAAAAATCACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                   <  2:3611916/125‑1 (MQ=255)
                                                                                             ttttttATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                 <  1:3657769/125‑1 (MQ=255)
                                                                                                ttaaaaataaaaaaaaaaaaaaaaaaaATCAC‑‑ATTAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:2182362/117‑1 (MQ=255)
                                                                                                  ttaattaaaaaaaaaaaaaaaaaaaATAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                             <  2:3229023/119‑1 (MQ=255)
                                                                                                  tatttaaaaaaaTAAAAAAAAAAAATAATCTATAAAAATATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:3602353/119‑1 (MQ=255)
                                                                                                  tataataacaAAAAAAAAAAAAAAAAAACC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:1588807/121‑1 (MQ=255)
                                                                                                   tttttaaaaaaaaaaaaaaaaaaaATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                           <  2:1710309/120‑1 (MQ=255)
                                                                                                    atttttaaaaTAAAAAAAAAAAAAATTCCAATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                            <  1:518498/121‑1 (MQ=255)
                                                                                                    acttaaaaaaaaaaaaaaaaaaaATCACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                         <  2:1466731/121‑1 (MQ=255)
                                                                                                     ttataaaaaaaaaaaaaaaaCAAAAACCTAAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                           <  1:4149535/122‑1 (MQ=255)
                                                                                                     cttataaaaTAAAAAAAAAAAAATAGAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                         <  2:1953107/122‑1 (MQ=255)
                                                                                                      tttaaaaaTAAAAAAAAAAAAATATCCTTTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                         <  1:2720797/123‑1 (MQ=255)
                                                                                                        aaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                      <  1:3999052/125‑1 (MQ=255)
                                                                                                          caAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                    <  2:3728044/128‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaaaaaaaaCACTTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                     <  1:2986514/128‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaATCCCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                   <  2:3857355/125‑1 (MQ=255)
                                                                                                                 aaaaaaaaaaaaTACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc              <  2:1906583/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                              
GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAA  >  CP016816/202357‑202609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: