New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895677 (0.250)405 (0.140)
+TTT
99/214 18.4 35.1% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 755 (0.250)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1155 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022
                                                                                                                                       |                                                                                                                                    
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTg                                                                                                                                      >  1:5130810/1‑128 (MQ=255)
ttaatttttttttATAAAAAAAAATAAAAATTTTTAATTTAAAGACATTTTTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAATTGTATTTTTTAGG‑‑C‑‑TTg                                                                                                                                      >  2:3688951/6‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTATTAGG‑‑A‑‑TTG‑‑‑tt                                                                                                                                 >  1:4876587/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tt                                                                                                                                 >  2:2190801/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTTAATCCATTTTTAAAAAATCCTATTTTCTATGCTTTTTATTATACTTTTAAACATTACAACGCTTTAAAATTGTATTTTTTTTG‑‑C‑‑TTG‑‑‑ttt                                                                                                                               <  2:1536691/128‑1 (MQ=255)
    aTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttt                                                                                                                              <  1:5623393/128‑1 (MQ=255)
     ttttttttAAAAAAATAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑ttttt                                                                                                                             <  1:6523877/128‑1 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑ttttttt                                                                                                                           >  1:1598160/1‑128 (MQ=255)
         ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑ttttttttt                                                                                                                         >  1:5500227/1‑128 (MQ=255)
          tttATAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTAAAAAAGCCTATTTTATAGGCTTTTTATTATAATTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttttttttt                                                                                                                        <  1:2445812/128‑1 (MQ=255)
            cataAAAAAAAATAAAATTTTTTTATTTAAATCATTTTTTAAAAAACAATTTTTTTTTTGCTTTTTTTTATACTTATTAACATTAAAAAGCTTTCAAATTTTATTTTTTTGG‑‑t‑‑ttt‑‑‑tttttttttttt                                                                                                                      <  2:1837294/127‑1 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCATTTAAATCCATTTGTAAAAAAGCTTATCTTCTTGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑ttttttttttttt                                                                                                                     <  1:6621411/128‑1 (MQ=255)
                taaaaaaaaTTAAAATTTTTCATTTTAAGCCATTTGTAAAAAAGACTATGTTATAGGCTTTTTATTATACTTATCAAAATTAAAAATCTTTAAAAGTTTTTTTTTTAGG‑‑C‑‑TTG‑‑‑gattttttttttttt                                                                                                                   >  1:4295010/2‑128 (MQ=255)
                taaaaaaaaTAAAATTTTTTAATTTAAATCATTTTTTAAAAATGCATTTTTTTTTGGGTTTTTTTTTTATTATTAAACATTAAAACGCTTTAAAATTTTATTTTTTTGG‑‑G‑‑TTG‑‑‑ttttttttttttttt                                                                                                                   <  2:5973476/127‑1 (MQ=255)
                 aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttttttttttttttt                                                                                                                  >  1:3621234/1‑128 (MQ=255)
                 aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttttttttttttttt                                                                                                                  >  2:5510586/1‑128 (MQ=255)
                   aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttttttttttttttttt                                                                                                                >  1:5197151/1‑126 (MQ=255)
                        ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑tttttttttttttttttttttaa                                                                                                           >  2:543270/1‑121 (MQ=255)
                        aaaaaaaaTTTTAATTATAACCAATTTTTAAAAAATAATATTTTCTATTCTTTTTATTTTTATTATAAACATTAAAACCATTTAAAAGTTTATTTTTTATGT‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTaaaa                                                                                                           <  2:1703577/126‑1 (MQ=255)
                          aaaaatTTTTTATTTATATCGTTTTTTTAAAAAGTCTATGTTTTAGGTTTTTTATTATATATATCAAAATTTTAACCCTTTCAAATTTTATTTTTTTTG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATa                                                                                                        <  2:3905609/128‑1 (MQ=255)
                           aaaatTTTTATTTTAATCCCATTTTTTAAAAAGACTTTGTTTTAGGTTTTTTTTTTTAATTATCAAAATTACAACGCTTTAAAAGTTTTTTTTTTATG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATa                                                                                                        <  2:5065371/128‑1 (MQ=255)
                            aaatTTTTAATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTGTTTTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATaa                                                                                                       <  1:614399/128‑1 (MQ=255)
                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAATaaa                                                                                                      >  2:800755/1‑128 (MQ=255)
                               tttttAATTTAAATCCATTTTTAAAAAAGCCTATGTTCTATGGTTTTTTTTTTAATTATAAAAATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                   <  1:456589/128‑1 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTTAaaaaaaaaaat                                                                                                  >  2:6219470/1‑125 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACACTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATaaaatt                                                                                                   >  1:5454944/1‑126 (MQ=255)
                                ttttCATTTAAAGCAATTTGTAAAAAACCCTAAGTTTAATGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTTGG‑‑CTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                   <  2:3538196/128‑1 (MQ=255)
                                 tttaatttaaATACTTTTTTAAAAAATCTTATGTTTTTTGTTTTTTATTATACTTTTCAAAATTAAAAAGATTTCAAATTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                   <  1:1298678/128‑1 (MQ=255)
                                  ttgaTTTAAAGCCATTTGTAAAAAAGCCTATGTTCTTGGGTTTTTTTTTTAATTTTAATAAATACAACCCTTTCAAATTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTa                                                                                                  <  1:763909/125‑1 (MQ=255)
                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGAGTATTTTTTAGG‑‑C‑‑TTC‑‑‑TTTATTTTTTTTTTTAGTAAAAAAAAAAGTAAg                                                                                                >  1:2755331/1‑128 (MQ=255)
                                   ttaTTTAAATCCATTTGTAAAAAATCCTATTTTCTAGGATTTTTTTTATAATTATTAACATTAAAACGATTTCAAAGTTTATTTTTTAGG‑‑C‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGa                                                                                               <  1:100803/126‑1 (MQ=255)
                                       ttatatcaaTTTTTAAAAAATTCTATTTTATTTGTTTTTTAATATATATATTAAAATTAAAAAGTTTTTTAATTGTTTTTTTTTTG‑‑CTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGAttt                                                                                            <  1:3808280/120‑1 (MQ=255)
                                       ttAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTTTTATAATTATCAAAATTAAAACGCTTTTAAATTGTATTTTTTAGG‑‑C‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTg                                                                                           <  1:6061425/128‑1 (MQ=255)
                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTCCAACGCTTTCAAAGTGTATTTTTTTGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTTAAAATTAAATTTATAtttt                                                                                           >  2:3380560/1‑127 (MQ=255)
                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAACTGTAGTATTTATG‑‑C‑‑TTGA‑‑TTTTTTTTTTTTTTTTTTAAAATAAAAAGTAATATTTg                                                                                           >  2:4367638/1‑128 (MQ=255)
                                            gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAAATTTGTATc                                                                                       >  1:5710075/1‑128 (MQ=255)
                                                 ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTAAAAATAAAAATAAAATTTGGATCAACCaaa                                                                                >  2:5754407/1‑128 (MQ=255)
                                                   ttaaataattcTATTTTTTAGTTTTTTTTTTATAATTTTTAAAATTAAAACGCTTTTAAATTTTATTTTTTTTG‑‑CTTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaa                                                                                 <  1:5988303/118‑1 (MQ=255)
                                                   gTATAATAGCCTATGTTCTAGGCTTTTTTTTATACTTATCAACATTACAAATCTTTAAAAGTGTATTTTTTTGT‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaa                                                                                <  1:6449484/128‑1 (MQ=255)
                                                     aaaaatGACTATTTTATAGGCTTTTTATTATAATTTTAAAAATTAAAAAGCTTTCAAATTGTTTTTTTTATG‑‑CTTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  2:5804972/128‑1 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAAATTTTTATAAAACAAAAatat                                                                           >  1:43777/1‑128 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATAAAACAAAAatatata                                                                        >  1:2132921/1‑127 (MQ=255)
                                                             cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGTATCAACCAAAAATATATaaa                                                                      >  1:5925860/1‑128 (MQ=255)
                                                             cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTTAAAATAAAATTAAGATTTTGATCAAACAAAAATTTATaaaa                                                                     >  1:5385968/1‑128 (MQ=255)
                                                              tattttttttgttttttATTTTTTTTATCAAAATTAAAAACCTTTAAAAGTTTATTTTTTTTGG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCaaa                                                                     <  2:4202994/116‑1 (MQ=255)
                                                              tATTTTATATGCTTTTTATTATAATTATCAAAATTAAAACTCTTTAAAAGTGTATTTTTTATG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  1:5063387/128‑1 (MQ=255)
                                                              tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTAAAAATAAAAGTAAATTTTGTATAAACCAAAAATTTTTaaaaaa                                                                   >  1:6276565/1‑128 (MQ=255)
                                                               aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAGTTATATTTGGTTAAACCAAAAATATATaaa                                                                      >  1:3490899/1‑128 (MQ=255)
                                                               aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTTGTAAAACAAAAAATATATAaaaa                                                                    >  2:600834/1‑128 (MQ=255)
                                                                ttttttattcTTTTTTTTTTATTTATAAAAAATAAAAAGCTTTTAAATTGTTTTTTTTATG‑‑CTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                   <  2:6069276/119‑1 (MQ=255)
                                                                  ttatattatttttATTTATATTATCTAAATTAAAAGTCTTTTAAATTGTATTTTTTATG‑‑C‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                <  1:4969462/120‑1 (MQ=255)
                                                                  ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATTAAGATTTTGATCAACCAAAAATTTATaaaaaata                                                                 >  1:2003273/1‑126 (MQ=255)
                                                                   tgttgtatttttATTATAATTATAAAATTTAAAAAGATTTATAAGTGTATTTTTTTGGTT‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                <  1:2840138/121‑1 (MQ=255)
                                                                   tCTAGGCTTTTTATTATACTTATCAACTTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAATATTTTGATCAAGCAAGATTTTATAAAAAAAAt                                                                >  1:3371448/1‑128 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGGATAAACCAAAACTATATCAAAAAAATTa                                                              >  1:1139496/3‑128 (MQ=255)
                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATAAAAATTTGTATAAACAAAAAGAATAAAAAAAAAAtt                                                               >  1:2972251/1‑128 (MQ=255)
                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTGTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGTTCAACCAAAACTATATCAAAAAAAtt                                                               >  2:1446837/1‑128 (MQ=255)
                                                                     tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTTAAAATAAAATTTATATTTTGATAAACCAAAACtattaaaaataaat                                                                >  1:5284422/1‑117 (MQ=255)
                                                                     tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTTAAAATAAATGTATAATTTGGATCAACAAAAAAAATAAATAAAAAATTaa                                                             >  2:5383403/1‑128 (MQ=255)
                                                                      tttatttttATTATTTTTATGATCTTTAAAAAGCTTTGAAAGTGTATTTTTTTTG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                             <  2:5610181/124‑1 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAGATTTGTATAAACCAAAACTATATAAAAAAAATTaa                                                             >  1:4788079/1‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAGTAATATTTGTATAAACAAAAACTATATAAAAAAATTTaa                                                             >  1:465940/1‑128 (MQ=255)
                                                                        gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTTGATAAAACAAAAAATTATAAAAAAAATTaaaa                                                           >  2:1108689/1‑128 (MQ=255)
                                                                         cTTTTTATTTTACTTTTAAAAATTTAAAATTTTTAAATTTTTATTTTTTAGT‑‑T‑‑TTG‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaa                                                        <  1:1893914/128‑1 (MQ=255)
                                                                           ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAATAAAATTTGTATAAAACAAAACAATATAAAAAAAATTaaaaaa                                                         >  2:5669003/1‑128 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTTATAAAAAAAAAAAATAAAAAAAAATTTaaaaaaaa                                                       >  1:3951573/1‑128 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAAATTTTGATAAACCAAAACTATAAAAAAAAAATTaaaaaaaaa                                                      >  2:5903645/1‑127 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGTAACAACAAAAAATATAAAAAAAAAATTaaaaaaaaaa                                                     >  1:6352074/1‑126 (MQ=255)
                                                                               attatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGTTAAACAAAAACATTATCAAAAAAATTTAAAAAAAt                                                      >  2:4619558/1‑128 (MQ=255)
                                                                               attatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTGTAAAAAACAAAAAAATATCAAAAAAATTaaaaaaattgtt                                                   >  2:3464061/1‑123 (MQ=255)
                                                                                   ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATAAACCAAAAATAAATAAAAAAAATTAAAAAAAAtattt                                                  >  1:4091503/1‑128 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGAAAAACCAAAAATTTTTAAAAAAAAATaaaaaaaaattttt                                                 >  1:1364921/1‑122 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGGATAAACCAAAACTATATAAAAAAAATAAAAAAAAAaattttat                                               >  2:5183961/1‑127 (MQ=255)
                                                                                       ttATCAACATATCAACGCATTCAAAGTGTATTTTTTTGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                             <  2:6319302/128‑1 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGATAAACAAAAAATATTTAAAAAAAATTAAAAAAAAtattttatttt                                            >  1:164965/1‑127 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTGTAAAAATAATAGTAAGATTTGGATCATCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTGAg                                          >  2:5120351/1‑128 (MQ=255)
                                                                                        tATCAAAATTATAAAGTTTTAAATTTTTATTTTTTATT‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                            <  1:5782433/128‑1 (MQ=255)
                                                                                         aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTTATATTTGTTTAAACAAAAAATAAAAAAAAAAAATTAAAAAAAAttatttaatt                                             >  2:1947678/1‑128 (MQ=255)
                                                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGGATAAACCAAAAATATATAAAAAAAATAAAAAAAAAtattttattttat                                          >  1:1776095/1‑125 (MQ=255)
                                                                                            aaaaTTATAATGTTTTAAAATTGTTTTTTTTAGGTTT‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGt                                         <  2:729041/125‑1 (MQ=255)
                                                                                             aCATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTAATAAACAAAAAATAAAACAAAAAAATTAAAAAAAAAattttattttatttt                                       >  2:2364533/1‑128 (MQ=255)
                                                                                             aCATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAGATTTGGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAAAAATTTattttatttt                                       >  1:5860676/1‑128 (MQ=255)
                                                                                                ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTTTACAAACAAAACAATTAAAAAAAAAATAAAAAAATAGTTTATGTGATTTTCCAAt                                  >  1:4207862/1‑128 (MQ=255)
                                                                                                 tACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAATATTTGGTTCAACCAAAACTATTTAAAAAAAAATAAAAAAAATAATTTATTTTATGTTCaa                                    >  1:1507176/1‑128 (MQ=255)
                                                                                                 tACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAATATATTTTAGTTTAGTTTGAAAtg                                 >  2:3206238/1‑127 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTTTAAAAAACAAAAATATAAAAAAAAAATTAAAAAAAATATTTTATTTAAATTTAAAAta                                 >  1:904226/1‑127 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTGGTTAAACAAAAAATAAAAAAAAAAAATTAAAAAAAATAGTTTATTTGTTTTTAAAATATg                               >  1:2248735/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑‑TTTTTTTTTTTTTTGAAAAAATAAAATTAAAATTTGATTAAACCAAAAATTTATAAAAAAAATTAAAAAAAATATTTAATTTTATTTTaaaaaatgaaa                            >  1:2576240/1‑121 (MQ=255)
                                                                                                      cGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTGTAAAAATAAAATTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATAATTTAGTTTATTTTCAAATCTg                               >  1:3099862/1‑128 (MQ=255)
                                                                                                       gCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCat                            >  1:3752517/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGAAAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAATATGAata                           >  1:2338466/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAAATTTGGAAAAACCAAAAATATTAAAAAAAAATAAAAAAAAATTGTTTTTTTGAGTTTAAAAACTgaaaat                          >  2:250993/1‑123 (MQ=255)
                                                                                                           tCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATGCatata                         >  2:2905377/1‑128 (MQ=255)
                                                                                                           tCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATAAAGATTTTGATCAACACAAAATAAATCAAAAAAATTAAAAAAAAAAGTTTAGGTGAGTTTCAAATAAGCataat                         >  2:4964714/1‑126 (MQ=255)
                                                                                                           tCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAAATTTGGAAAAACCAAAACTAATTAAAAAAAAATAAAAAAAAAAATTTATTTTAGTTTAAAATCAGCatatat                        >  2:6411199/1‑128 (MQ=255)
                                                                                                            tattatttttttttttAGG‑‑A‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatata                         <  2:615943/118‑1 (MQ=255)
                                                                                                             aaaGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTTATATTTGTATAAAAAAAAAATAATAAAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTCAAAAGGGCatattt                        >  2:6549327/1‑126 (MQ=255)
                                                                                                                 gttatttttttGGT‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                   <  2:5261463/123‑1 (MQ=255)
                                                                                                                    aTTTTTTAGG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTATAAAAATAAAAGAAAAATTTGTATCAACAAAAAAAATAAAAAAAAAATAAAAAAAAATATATTATTTTAGTTTCAAAAATGAAAATATAATACaaa                >  1:3237142/1‑128 (MQ=255)
                                                                                                                              tttttggttG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt           <  2:2042429/121‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                    
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.