BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 202486	252 (0.080)	532 (0.170)	99/252	21.8	66.7%	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
*	?	CP016816	202490 =	280 (0.090)	532 (0.170)	99/252	21.8	66.7%	intergenic (+268/‑407)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 735 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202367‑202618

  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaaaattaaa‑a                                                                                                                         >  1:5767706/1‑128 (MQ=255)

   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACAC‑‑ttaaaaattaaa‑aa                                                                                                                        >  1:5409584/1‑128 (MQ=255)

   ataataGAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTAACAAA‑AAAAAAAAAACAATCACC‑‑ttaaaaattaaa‑aa                                                                                                                        >  2:6223893/1‑128 (MQ=255)

       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAC‑‑ATTAAAAATTaaa‑aaaaaa                                                                                                                    >  2:3744379/1‑128 (MQ=255)

          agTTAATGTTAATAAAAAAACCATAAACTTAAAAATTCATATAATTTATAACCACGTTAACTTTTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaa                                                                                                                 <  1:5515660/128‑1 (MQ=255)

          agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAAAAATaaa‑aaaaaaaaaa                                                                                                                >  2:2509208/1‑128 (MQ=255)

           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATACCC‑‑ATAAAAATTaaa‑aaaaaaaaaa                                                                                                                >  2:6091679/1‑128 (MQ=255)

           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAAAAATtaa‑aaaaaaaaaaa                                                                                                               >  2:1438511/1‑128 (MQ=255)

            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AAACCCC‑‑‑TAAAAAATaaa‑aaaaaaaaaaaa                                                                                                              >  2:3520282/1‑128 (MQ=255)

            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaa                                                                                                               >  2:6193206/1‑128 (MQ=255)

             tAATGTTAATTAAAAAAACATAAAATTATAAATTTTTATAATTTTTATTCTCGTGTTATATTTTTTTATTTGTTTATATTCAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaa                                                                                                              <  2:6255277/128‑1 (MQ=255)

             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCATCACAAATAAAAAAAAAA‑AATCCCC‑‑TAAAAAAATaaa‑aaaaaaaaaaaa                                                                                                              >  2:4178990/1‑128 (MQ=255)

             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaa‑aaaaaaaaaaaa                                                                                                              >  1:1599810/1‑128 (MQ=255)

             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAA‑AATCAAC‑‑‑TAAAAAATtaa‑aaaaaaaaaaaaa                                                                                                             >  1:6363911/1‑128 (MQ=255)

             tAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATAATCTTTATCTATTTTTTAATTTTTTTATCTTAAAAAATAAAAAAAAAA‑AATCAAC‑‑TTAAAAATTaaa‑aaaaaaaaaaaa                                                                                                              >  1:4909691/1‑128 (MQ=255)

              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAATT‑‑‑AAAAATaaa‑aaaaaaaaaaaaaa                                                                                                            >  2:6506798/1‑128 (MQ=255)

              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaa                                                                                                             >  2:4977994/1‑128 (MQ=255)

              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAA‑AATCAAATT‑‑‑AAAAATaaa‑aaaaaaaaaaaaaa                                                                                                            >  2:3019414/1‑128 (MQ=255)

               attttaattaaAATAAAAAAAAATTAATAATTAATATAATTTATAACCTCTTTATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATACCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaa                                                                                                            <  1:3142719/125‑1 (MQ=255)

               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaa                                                                                                            >  2:6598191/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATaaa‑aaaaaaaaaaaaaaaa                                                                                                          >  2:1624136/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaa                                                                                                           >  2:5177151/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaa                                                                                                           >  2:5411575/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATTaaa‑aaaaaaaaaaaaaaa                                                                                                           >  2:758814/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTAATTTATTATCTTCACAAAT‑AAAAAAAAACAAACACCAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                             >  2:2767896/1‑128 (MQ=255)

                ggTTAATTAAAATACCATAAACTTAATAATTATTATAATGTATATAATATTGATCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAACAAAAAAC‑‑‑TAAAAAATtaa‑aaaaaaaaaaaaaaaa                                                                                                          >  2:4724036/1‑128 (MQ=255)

                 gTTAATTTAAATAACATAAAATTAATAATTCTTATAATGTAGAAAATTTTTATTAATTTTTTTATTTTTATATCTTCACAAATAAAAAAAAAA‑AATCCCC‑‑ATAAAAATTaaa‑aaaaaaaaaaaaaaaa                                                                                                          <  1:6476661/128‑1 (MQ=255)

                 gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaa                                                                                                          >  2:5597986/1‑128 (MQ=255)

                   taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTAATTTTTTTATATTCACAAATAAAAAAAAAAAAA‑‑‑CAAATAAAAAATTaaa‑aaaaaaaaaaaaaaaaaa                                                                                                        >  2:4444073/1‑128 (MQ=255)

                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAT‑‑CCAATAAAAAATTaaa‑aaaaaaaaaaaaaaaaaa                                                                                                        >  1:726295/1‑128 (MQ=255)

                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaa                                                                                                        >  2:5315276/1‑128 (MQ=255)

                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑‑TAAAAAATaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                       >  2:1888171/1‑127 (MQ=255)

                    aaattaaaTAACATAAAATAAAAAAATTTTATAATTTATATACTCGTTTTTTATTTTTTTTATTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAAATTaaa‑aaaaaaaaaaaaaaaacta                                                                                                       <  2:2254098/123‑4 (MQ=255)

                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaataaaaa                                                                                                      >  2:1738058/1‑126 (MQ=255)

                       taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:5466765/1‑124 (MQ=255)

                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaataa                                                                                                   >  2:5789904/1‑123 (MQ=255)

                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:1003267/1‑123 (MQ=255)

                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:3563099/1‑123 (MQ=255)

                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2054818/1‑128 (MQ=255)

                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:5907865/1‑128 (MQ=255)

                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:4957368/1‑128 (MQ=255)

                           ataaaaTAAAAATAATAAATATTATAATTTATATCATCTTTTTATAATTTTTTATTTTTTTATAAT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAaaaca                                                                                               <  1:3692356/123‑1 (MQ=255)

                            tatcATAAAATTATTAATTATTAAAATTTATTTCATGGTTTTGTTTTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAgaacaa                                                                                              <  1:3787751/125‑1 (MQ=255)

                               cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACaaaaaaaaaaaa                                                                                           >  2:5724598/1‑126 (MQ=255)

                               aaaaaaattaaaaattaTTATAATTTAAATACTATTTATCTATTTTTTTATTTTTTTATATTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                         <  1:3282918/125‑1 (MQ=255)

                                 aaaaTTTAAAAATATTTATAATTTAAATAATCTTTATATATTTTTTAATTTTTTTATATTAAAAAAAAAAAAAAAAAAAA‑‑CCCATT‑‑AAAAAT‑‑A‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                       <  1:3937970/127‑1 (MQ=255)

                                      ataataaTTATTAAAATTTATATACACTTGATATATTTTTTAATTTGTTTATATAAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                    <  1:2731440/127‑1 (MQ=255)

                                       taataaTTATTAAAATTAAGATCCTCTTTTTAAATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAACAACTAAAAACAAACTCTATTTCtt                                                                                  <  2:125896/128‑1 (MQ=255)

                                        aataatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAA‑‑TAAAAAAAAACTCTAttaaataa                                                                                >  2:3342805/1‑122 (MQ=255)

                                        aataatTATAAAAATGTATATATTCCTGATATATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAAAAAACCC‑‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                   <  1:2370102/128‑1 (MQ=255)

                                         ataatTCTTATAATTTATATACTAGTTTTATATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                 <  1:4049019/128‑1 (MQ=255)

                                          taatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAATAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                 >  2:3957710/1‑128 (MQ=255)

                                              tcatataATTTAGATCCTCTGTATATATTTTTTTATTTTTTTAAATT‑AAAAAAAAAAAAAAAACAATACCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAtt                                                                            <  1:5827232/125‑1 (MQ=255)

                                                 tataATTTATATCCTATTTATATATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATACCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                        <  1:3047446/128‑1 (MQ=255)

                                                   aaaTTTAGATACTCGGTTTATATTTTTTTATTTTTTTATCATCACAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TT‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                      <  1:6131134/127‑1 (MQ=255)

                                                    aatttattatcTCGTTATATATTTTTTTATTTTTTTATTTTCA‑AAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                    <  1:6265921/118‑1 (MQ=255)

                                                    aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCAtatt                                                                     >  2:6367905/1‑128 (MQ=255)

                                                    aaTGTAGATCCTCCTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                     <  2:3626619/128‑1 (MQ=255)

                                                      tGTATAACCTCGGTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                   <  1:6222293/128‑1 (MQ=255)

                                                        tacaaactattGATATATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                  <  1:1765303/118‑1 (MQ=255)

                                                          taaccTCGTTATTTATTTTTTTATTTTTTTATTTTAAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                <  1:5367912/125‑1 (MQ=255)

                                                              ctctgtatatttttttttatttttttaTATTAAAAAATAAAAAAAAAA‑AATACCATTT‑‑AAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAACCTCTATTTCTTAAAATTCCCTATTATACcaca                                                             <  1:4513836/117‑1 (MQ=255)

                                                               tcgttaaatATTTTTTTAATTGTTAAACTTCACAAAT‑AAAAAAAAACAAACCCC‑‑‑TAAAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:3535805/120‑1 (MQ=255)

                                                                 gtttttttttttttttttttttAATATACAAAAAAAAAAAAAAAAAAAAACCATT‑‑‑AAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  2:5263222/120‑1 (MQ=255)

                                                                 gttatatATTTTTTTAATTTTTTAAATTAAAAAATAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                           <  1:1331907/122‑1 (MQ=255)

                                                                       tATTTTTTTTTTTTTTTAAATTTAAAAATAAAAAAAAAA‑AATACC‑‑ATTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  1:2054672/128‑1 (MQ=255)

                                                                        ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:5017227/127‑1 (MQ=255)

                                                                        tattttttATTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAATCCCC‑TTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  1:5922997/126‑1 (MQ=255)

                                                                        atttttttatttttttAT‑ATAAAAAATAAAAAAAAAA‑AAT‑‑ACTCTTAAAATATTAA‑AAAAAAAAAAATAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:417248/128‑1 (MQ=255)

                                                                        aTTTTTTTAATTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCCATAAAAAATAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                     <  1:6413012/128‑1 (MQ=255)

                                                                         tttttttatttttttaTATTCA‑AAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  2:549269/128‑1 (MQ=255)

                                                                           tttttATTTTTTAAACATAACAAATAAAAAAAAAA‑AAACCACTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  2:5340015/128‑1 (MQ=255)

                                                                            ttttATTTTTTTATATTAACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  2:2395407/128‑1 (MQ=255)

                                                                             tttatttttttattttCA‑AAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  2:831293/128‑1 (MQ=255)

                                                                              ttttttGTTTAAATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:6616599/125‑1 (MQ=255)

                                                                              ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:1463743/128‑1 (MQ=255)

                                                                              ttATTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACATT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:834459/128‑1 (MQ=255)

                                                                               tATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATAACC‑‑‑TAAAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  2:3110920/128‑1 (MQ=255)

                                                                                aTTTTTTTATTTTAAAAAAAAAAAAAAAAAAAAACCC‑‑‑‑TAAAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  1:2194318/128‑1 (MQ=255)

                                                                                  ttttttATCTTAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                        <  1:529037/125‑1 (MQ=255)

                                                                                     ttttatattaaaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  1:521521/117‑1 (MQ=255)

                                                                                     tttATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAA‑AAAAAATTTTTATTAAAATTACATATTATAAAAAATATTATATTAaaaaaatataattta                                    >  1:3426799/1‑117 (MQ=255)

                                                                                      ttATATTAAAAAATAAAAAAAAAA‑AATACCCTTT‑‑AAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                     <  1:2509208/128‑1 (MQ=255)

                                                                                       tatatttaaaaaaaaaaaaaaaaaaATCCCATT‑‑‑AAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                   <  1:5085059/119‑1 (MQ=255)

                                                                                        tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                  <  1:1667056/120‑1 (MQ=255)

                                                                                          attaaaaaaTAAAAAAAAAA‑AATACCCTT‑‑‑AAAAATT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                              <  1:5597986/122‑1 (MQ=255)

                                                                                             ttaaaaaaaaaaaaaaaaaATACCCAT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                              <  2:5072865/125‑1 (MQ=255)

                                                                                                    taaaaaaaaaCAATCCCC‑‑TTAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                       <  1:5443438/127‑1 (MQ=255)

                                                                                                      aaaaaaaaaaATCACC‑TTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                       <  1:6011964/128‑1 (MQ=255)

                                                                                                      aaaaaaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatta                      <  1:4436571/128‑3 (MQ=255)

                                                                                                          aaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAAATACATATTAAACACAATTTTATTTTAAAAATAAAATAATAAAATAATAAAtatatatat                  >  2:6029818/1‑125 (MQ=255)

                                                                                                          aaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAAAAAACTCTATTTATTAAAATTACATATTTTAACAAATTTTATTTTTAAAAAAAAATATTTAAATAATATATATATAatat                 >  1:428032/1‑128 (MQ=255)

                                                                                                             aaaaaattaaattAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                <  1:2454047/117‑1 (MQ=255)

                                                                                                              aaaaataccattaaaaattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                <  1:1953689/118‑1 (MQ=255)

                                                                                                              aaaaataacattAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  2:5679467/118‑1 (MQ=255)

                                                                                                               aaaataaccttaaaaattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:2929304/119‑1 (MQ=255)

                                                                                                                 aataaccttAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata            <  1:5682963/121‑1 (MQ=255)

                                                                                                                    taagcataaaaataaataaAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTTACATAATATATATCTAATATATataa           <  1:4631965/121‑1 (MQ=255)

                                                                                                                        cttaaaaattaa‑aaaAAAAAAAAAAAAAAACTAAAACAAAACTCTATTTATTAAAATTCCCTATTATACCACAGTTTATTTTTAAAATAAGATTATTACATAATATTTATCTAAtataaatataaaaa      >  1:774559/4‑122 (MQ=255)

                                                                                                                        cttaaaaattaa‑aaaAAAAAAAAAAAAAAA‑TAAAAACAAAAAAATTTTATTAAAAATCCCAATAAAAACACAATTAATTTATAAAATAATAAATTGAAAAAAAATATAAAAAATATAAataataataa     >  1:6067725/4‑127 (MQ=255)

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202367‑202618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.