BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	317 (0.130)	875 (0.300) +ATAT	165/188	3.9	65.4%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	548 (0.180)	875 (0.300) +ATAT	165/188	3.9	65.4%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1493 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTACATATTACATATAGAG‑‑‑‑TTT‑AT‑‑‑‑‑‑G‑‑‑‑atata                                                                                                                                         >  1:892370/1‑128 (MQ=255)

    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atata                                                                                                                                         <  1:3844213/128‑1 (MQ=255)

        aatttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAAAAAATATTATAAGAAATCAAGCAAAGCAAAAACCTACATATTACCTAAAGAG‑‑‑‑ATA‑AT‑‑‑‑‑‑G‑‑‑‑ataaata‑‑‑‑ta                                                                                                                                 >  2:1937046/3‑128 (MQ=255)

             gttgtttttattttCATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatat                                                                                                                            <  2:1288717/117‑1 (MQ=255)

             gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatat                                                                                                                            <  1:6007968/128‑1 (MQ=255)

               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatat                                                                                                                          >  1:3464568/1‑128 (MQ=255)

               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatat                                                                                                                          >  2:6595869/1‑128 (MQ=255)

                gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAAACTCAATATTACATATATAT‑‑‑‑TTA‑AT‑‑‑‑‑‑T‑‑‑‑atatata‑‑‑‑tatatatata                                                                                                                         >  1:5881387/1‑128 (MQ=255)

                gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTCTATTTTTAAAATAAATATTTTATGAAATGAAGCAAATCAAAAACCACCATATTACCTATAGAG‑‑‑‑ATA‑AA‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatata                                                                                                                         <  1:6525750/128‑1 (MQ=255)

                  tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatata                                                                                                                       >  1:5790906/1‑128 (MQ=255)

                   tttattttAATTTTTAATATATATTAGAAATAAAATTTGTATTTTTAAATAAAATATTTTAGTAAATGTAGCAAAGAAAAAACCTAAATATTACCTATATAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatataaatat                                                                                                                      <  2:5971808/123‑1 (MQ=255)

                   tttaGTTTAATTTTTAATAAATATTTTTTATATAAATTTTATTTTTTAAATATATATTTTAGTATATGAAGCAAATAAAAAAACTCAATATTAACTATAGAG‑‑‑‑TTT‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatat                                                                                                                      <  2:2618321/125‑1 (MQ=255)

                   ttaatattaatatttAATAAATATTAGAAATAAAAATATTATTTTTAAAATAAATATTTTATTAAATTAATAAAATCAAAAAAATCAATATTACCTATAGAG‑‑‑‑ATA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatat                                                                                                                      <  1:997152/116‑1 (MQ=255)

                    ttattttCATATTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatata                                                                                                                     <  2:2733970/124‑1 (MQ=255)

                    tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTT‑AT‑‑‑‑‑‑C‑‑‑‑atatata‑‑‑‑tatatatatatata                                                                                                                     >  1:5213266/1‑128 (MQ=255)

                     aaGTTTTATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAAAATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatat                                                                                                                    <  2:5025494/128‑1 (MQ=255)

                     aaGTTTCATTTTTTATATATATTAGATCTAAAATTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCATAGCAAAAACCTCTATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatat                                                                                                                    <  1:6187708/128‑1 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatat                                                                                                                    >  1:2662698/1‑128 (MQ=255)

                       gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatat                                                                                                                  >  1:1823719/1‑128 (MQ=255)

                        tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata                                                                                                                 >  2:313061/1‑128 (MQ=255)

                         ttattttttAATAAATATTAGATATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATTAATCAAAGAAAAAACATCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑T‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑t                                                                                                            <  2:3978701/124‑1 (MQ=255)

                          ttaTTTATAATATTTATTAAAAATAAAAATAGTATATTTAAAATATATATTTTAGTAAATGAATAAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta                                                                                                           <  2:1175898/126‑1 (MQ=255)

                          tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta                                                                                                           >  2:6162383/1‑128 (MQ=255)

                           taTTTTTAATAAATATTATATATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATGAATCAAATCAAAAAAATCAATATTAAATATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑t                                                                                                      <  2:749674/127‑1 (MQ=255)

                           cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑t                                                                                                      >  1:4911549/1‑128 (MQ=255)

                            aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑ta                                                                                                     >  2:6235321/1‑127 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatat                                                                                                  >  2:1644705/1‑124 (MQ=255)

                                ttAAAAAATATTAGAAAACAAAATTTTATTTATAAAATAATTATTTTATTAAATCCATAAAACAAAAAAACTCCATATAACCAATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatata                                                                                                 <  1:1357188/128‑6 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatatgc                                                                                                >  2:4259678/1‑122 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatatga                                                                                                >  2:6059088/1‑122 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatataa                                                                                                >  1:5319225/1‑122 (MQ=255)

                                  aataaataTTATAAATAAATATTGTATTTTTAAAATAAATATTTTATTAAATTAATCAAATAAAAAACATCCATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑T‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatgcaag                                                                                               <  1:568664/128‑8 (MQ=255)

                                  aataaataTTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑ATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGAt                                                                                             <  1:1003283/128‑1 (MQ=255)

                                   ataaataTTAGAAATATAAATTGTATTTTTAAAATAAATATTTTAGGAAATGATGAAAAGCAAAAACCACAATATTACCTATAGAG‑‑‑‑TTA‑TT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatatatgc                                                                                              <  1:3553572/128‑9 (MQ=255)

                                   ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑TT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatattcaa                                                                                              >  2:931142/1‑120 (MQ=255)

                                   ataaataTAATAAATAAAAATTTTTTATTTAAAATAAATATTTTATTAAATGAAGCAAACCAAAAAACTCCATATTAAATATATAG‑‑‑‑TTA‑AT‑‑‑‑‑‑T‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatatatgc                                                                                              <  2:4889861/128‑9 (MQ=255)

                                      aatataatatATATAAATTGTATTTTTAAAATAAATATATTATTATATTAATAAAATAAAAAACATCTATATTAACTATATAG‑‑‑‑ATA‑ATTA‑‑‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGAt                                                                                             <  1:5082622/128‑1 (MQ=255)

                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGag                                                                                             >  1:2103161/1‑127 (MQ=255)

                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatatcaataac                                                                                           >  1:1688064/1‑117 (MQ=255)

                                       atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatgcaagctatc                                                                                          >  2:3865121/1‑116 (MQ=255)

                                       atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑atatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tatattcaagcta                                                                                          >  2:2322978/1‑116 (MQ=255)

                                          ttatataTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGCAAAGAAAAAACATCCATATAAACTATAGAG‑‑‑‑TTA‑A‑‑‑‑‑‑‑‑‑‑‑‑AGATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATaa                                                                                     <  1:1461252/122‑1 (MQ=255)

                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAG‑‑‑‑TAA‑AA‑‑‑‑‑‑G‑‑‑‑ATATATC‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGAGATCAACaa                                                                                       >  2:5711359/1‑127 (MQ=255)

                                          taaGAAAAAAAAATTGTATTTTTAAAATAAATATTTTATGATATTAAGAAAATCAAAAAACTCAATATTACATATATAG‑‑‑‑ATA‑ATTA‑‑‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGc                                                                                         <  2:3360705/126‑1 (MQ=255)

                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGAAAAAACATCTATATTATCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TATC‑‑TGCAAGCGATCAGCa                                                                                        <  2:6377902/128‑1 (MQ=255)

                                             gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAATAAAAAACCTATATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCTATCAGCATa                                                                                      <  1:201442/128‑1 (MQ=255)

                                               aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGAGATAAGCTTAAAAt                                                                                  >  1:375825/1‑128 (MQ=255)

                                                aTAAAAATTTTATTTTTAAAATAAATATTTTATGATATTAACTAAAGAAAAAACATACATATTAACTATAGAG‑‑‑‑TTA‑ATTATA‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATaa                                                                                     <  2:4094720/128‑1 (MQ=255)

                                                 tAAAAATTTTATTTTTAAAATAAATATTTTATGAAATTAAGAAAATAAAAAAACTCAATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATaaa                                                                                    <  1:4589131/128‑1 (MQ=255)

                                                 aaaaaaTTTTATATTTAAAAAAAATATTTTATGATATGAATCAAAGAAAAAACATCCATATAAACTATAGAG‑‑‑‑TTA‑AA‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATaaa                                                                                    <  1:2758890/127‑1 (MQ=255)

                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑A‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAAtt                                                                         <  1:1127058/128‑1 (MQ=255)

                                                     aaTTGTATTTTTAAAATAAATATTTTATTAAATTAATCAAATAAAAAACATCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTg                                                                              <  1:2440802/128‑1 (MQ=255)

                                                     aaTTGTATTTTTAAAATAAATATTTTATGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTg                                                                              <  1:4994176/128‑1 (MQ=255)

                                                       ttGTATTTTTAAAATAAATATATTTGTAAATTAATCTAATAAAAAAAATAGATATTAACTATAGAG‑‑‑‑ATA‑TT‑‑‑‑‑‑G‑‑‑‑‑‑ATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                        <  1:4247834/128‑1 (MQ=255)

                                                        tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCTATCAGCATAAAATGTTGATAtt                                                                         >  1:1591484/1‑128 (MQ=255)

                                                         gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TTCAAGCTCTCAGCATAAACTGGTTAAAt                                                                          >  2:2952773/1‑128 (MQ=255)

                                                          tATTTTTAAAATATATATTTTAGGAAATGAAGCAAAGAAAAAACCTCAATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGaaa                                                                           <  1:548461/128‑1 (MQ=255)

                                                          tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGCTATCAGCATAAAATTGTGAAAtt                                                                         >  1:5587981/1‑128 (MQ=255)

                                                           aTTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAAACTCAATATTACATATATAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  2:3242487/128‑1 (MQ=255)

                                                           aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGCTATCATCATAAATTGGTGAAAttt                                                                        >  2:648786/1‑128 (MQ=255)

                                                              attAAATTTAATATTTTAGTAAATCTAGAAAAGCTAAAACCTCCATCTTACATATAGAT‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:4366139/127‑1 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGAATAAAATTGTGATATTTata                                                                     >  2:5268289/1‑126 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGCGATCAGAATAAAATGGTGATATATAGATATg                                                                 >  1:6116047/1‑128 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑GTATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGCTATCAGCATAAAATTGTGAAATTTAGATCTGAg                                                               >  1:1235219/1‑128 (MQ=255)

                                                                 aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑ATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                              <  1:39642/128‑1 (MQ=255)

                                                                  acaaatatatTTTATGATATGTTGATAATCACAAACATCCCTATTAGCTCTAGAT‑‑‑‑TGT‑AT‑‑‑‑‑‑A‑‑‑‑TGATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGCTCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:2858966/122‑1 (MQ=255)

                                                                   aataaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑T‑‑‑‑‑T‑CTAGCGATCAGCAAAATATGGTTAAATTTATATCttatttt                                                            >  1:3648400/1‑122 (MQ=255)

                                                                    ataaataTTTTATTAAATTAAGAAAATAAAAAACATCCATATTAAATATATAG‑‑‑‑TTA‑TTTA‑‑‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCTATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:2463883/128‑1 (MQ=255)

                                                                      aaataTTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATATATGTA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:4787628/128‑1 (MQ=255)

                                                                        atatTTTATTAAATGAATCAAACAAAAAACCTCAATATTAACTATAGAGTTTTTTATATA‑‑‑‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:2076960/128‑1 (MQ=255)

                                                                          atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGAACAGCATAAAATCGTGAAATTTAGATCTGAGATGGTCTTAAATTTTTAGTTttta                                       >  2:4481283/1‑128 (MQ=255)

                                                                                ggAAATGAAGCAAAGCAAACACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCTATCAGAAGAAAATATAGAAATATAGATATGAgagagtatgatat                                                   >  1:750775/1‑116 (MQ=255)

                                                                                   aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGATATCAGCATAAAATGTTTAAATTTATATCTGAGTTGTTATTAAAtt                                                  >  1:4085580/1‑128 (MQ=255)

                                                                                      gAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCTTAAAATGGTGAAATTTAGATCTGAGTTGTTCTTAAAttttt                                               >  1:3301881/1‑126 (MQ=255)

                                                                                         gcaaagcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑ATTATATAT‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTa                                              <  2:5177129/128‑1 (MQ=255)

                                                                                          caaagcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGCTCTGAGTTTGTCTTAAATTTGTAGtt                                           >  2:3035127/1‑128 (MQ=255)

                                                                                           aaagcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAATTTttatttat                                  >  1:2896741/1‑128 (MQ=255)

                                                                                              gcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTttta                                       >  2:1769880/1‑128 (MQ=255)

                                                                                              gcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGATATATAGATCTGATTTGGTCTTAACTTTGTGTTTtttatt                                     >  2:4596988/1‑128 (MQ=255)

                                                                                                  aaaCCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTTTAGTTTTTATTtata                                 >  1:230899/1‑128 (MQ=255)

                                                                                                   aaCCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGAGATCAGCATAATATTGTGAAATATAGATCTGTGTTTGTATATTATTTTTATTTTttatttat                                  >  2:3751559/1‑128 (MQ=255)

                                                                                                    aaataaatatTAACTATAGAG‑‑‑‑TTT‑TT‑‑‑‑‑‑G‑‑‑‑ATATATATATTTATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                 <  1:4791369/122‑1 (MQ=255)

                                                                                                     acTCAATAATAACTATAGAT‑‑‑‑TTT‑AT‑‑‑‑‑‑‑‑‑‑‑‑TATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  1:3021174/127‑1 (MQ=255)

                                                                                                       tCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TCCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          >  1:6610295/1‑128 (MQ=255)

                                                                                                       tCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑‑‑ATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATTGTGAAATTTATATCTTAGTTGGTCTTAAATTTTTAGATTTTATTTATATTTTATAAAGt                      >  1:4486221/1‑128 (MQ=255)

                                                                                                        ccATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                             >  2:3653366/1‑128 (MQ=255)

                                                                                                        aaatatTAACTATAGAG‑‑‑‑ATA‑AT‑‑‑‑‑‑GAT‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  1:6302948/126‑1 (MQ=255)

                                                                                                          atatTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TAAAAGCTATCAACATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATATTTtat                           >  2:5608692/1‑128 (MQ=255)

                                                                                                           tatTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAATATTGTTATATTTATATATGAGTTGGTATTATATTTGTTGTTTTTTTTTATAGTTtatt                          >  2:5854924/1‑127 (MQ=255)

                                                                                                           tatTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATTGTTAAATATAGATCTGAGTTTGTCTTATATTTGTAGTTTTTATTTATAGTTtata                          >  1:2222155/1‑128 (MQ=255)

                                                                                                              taacTATAGAG‑‑‑‑TTA‑ATTA‑‑‑‑T‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                     <  2:1551831/125‑1 (MQ=255)

                                                                                                              taaatataGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                   <  1:4340636/124‑1 (MQ=255)

                                                                                                              tACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGAAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTAGAGTTTATAAAGTtaa                   >  1:2539059/1‑128 (MQ=255)

                                                                                                              tACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑‑‑ATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 >  2:1440940/1‑128 (MQ=255)

                                                                                                               aCCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑GATATATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTTAAATTTAGATCTGTGTTTGTATTATATTTGTAGTTTTTATTTATATTTTATAAAGt                      >  2:3469217/1‑128 (MQ=255)

                                                                                                               aCCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TATATGTGCAAGCGATCAAAATAAAATTGTTATATTTATATGTGAGTTGCTAATATATTTTTTGTTTTTATTTATATTATATATAGt                      >  1:3195133/1‑128 (MQ=255)

                                                                                                                                  agttaatgatatatatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tGCAAGAGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTGTAGTTTTTATTTATATTTTATAAAGTATATAAtt              >  2:5466527/13‑128 (MQ=37)

                                                                                                                                      ttaatgatatatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tACAAGAGATCAGAATAAAATTTTGAAATTTAGATCTGAGTTGGTATAAAATATGTTTTTTTTATTTATATTTTATAAATATTATAATTTata          >  2:2194900/9‑126 (MQ=19)

                                                                                                                                           tatatatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tGCAAGCGATCAGCAAAAAATTGTGATATTTAGATATGAGTTTGTCTTATATTTGTAGTTTTTATTTATATTTTATATATTTAATATTTTATAttttt     >  1:6426246/4‑128 (MQ=255)

                                                                                                                                            atatatata‑‑‑‑tatatatatatatatata‑‑‑‑ta‑‑‑‑tTAAAGCGATCAGAATAAAATTGTTAAATTTATATATGATTTGTTATTAAATTTGTAGTTTTTATTTATATTATATAATGTTAATAATTTATAtttttt    >  1:191561/3‑127 (MQ=255)

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑‑‑G‑‑‑‑ATATATA‑‑‑‑TATATATATATATATATA‑‑‑‑TA‑‑‑‑TGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.