Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4890A.36.4% 870.7 / inf 640intergenic (+267/‑408)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (209/197);  new base . (41/191);  total (250/390)
Fisher's exact test for biased strand distribution p-value = 5.96e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.38e-04

Only 100 of 691 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202367‑202617
                                                                                                                           |                                                                                                                                 
tAAATAATAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaaaaat‑aa                                                                                                                          >  2:5017227/1‑128 (MQ=255)
  aataatAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaaaatt‑aaaa                                                                                                                        >  1:5767706/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTAATAATGTATATACACTTGATCTATTTTTTTATATTATAATCTTCACAAAT‑AAAAAAAAACAATAAAC‑‑TAAAAAAAT‑aaaaaaaaa                                                                                                                   >  2:1681779/1‑128 (MQ=255)
        ttatttAACGTTAATT‑AAATATCACTAAACTTAATAAATTTTATAATGTTGATCCTCGGTTTCTATTTTTTTTTTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaa                                                                                                                  <  2:3196434/124‑1 (MQ=255)
          agTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTATATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAAAATT‑aaaaaaaaaaaa                                                                                                                >  1:2038790/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑aaaaaaaaaaaaaa                                                                                                              >  1:6012243/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATT‑aaaaaaaaaaaaa                                                                                                               >  2:6348724/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAAA‑AATAAC‑‑AATAAAAAAT‑aaaaaaaaaaaaaa                                                                                                              >  2:1198286/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaa                                                                                                             >  2:5090719/1‑128 (MQ=255)
              tattttaatttaAATAAAA‑TAAAAATTATAATTATTTTAAATTAAATACTATTTTTATATTTTTTTTTTTTTTTA‑ATATAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                            <  1:408074/124‑1 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAAAAAT‑aaaaaaaaaaaaaaaa                                                                                                            >  2:1325188/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAT‑‑CCAATTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                            >  1:761184/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACACCAT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaaa                                                                                                           >  2:6254655/1‑128 (MQ=255)
              aaGGTTAATTAAAATAACA‑TAAACTTAATAATTATTATAATGTAGATAATATTGATCTATTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAA‑AAT‑‑AAAATTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                            >  2:2455295/1‑128 (MQ=255)
               agattaattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                                           >  2:3654928/4‑128 (MQ=255)
               aGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                                           >  2:6598191/1‑128 (MQ=255)
               aGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                                           >  2:834459/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  1:45737/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  2:5411575/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  2:5870503/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  2:758814/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  2:5263761/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          >  2:5194456/1‑128 (MQ=255)
                ggTTAATTAAAATACAA‑AAAAATTAATAATTCTTATAATTTATATCCTCGTGTTCTTTTTTTTTTTTTTTTTATCATAACAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                          <  1:5593111/128‑1 (MQ=255)
                  ttaattaaAATACCA‑TAAACTTAATAATTCTTATAATTTAGATCAACTTTATATAATTATATATAAAAAAATATTAAAAAATAAAAAAAAAA‑AAT‑‑‑CAAAAAAAAAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:26926/1‑128 (MQ=255)
                   taattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:6074647/1‑128 (MQ=255)
                   taattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:5315276/1‑128 (MQ=255)
                   taattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTAATTTTTTATTTATATATATTCACAAAT‑AAAAAAAAACAAAAAACTTAAAAATaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                         >  2:4580865/1‑128 (MQ=255)
                    aattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAAAACAA‑‑AAAAATAAAAAATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:3110920/1‑127 (MQ=255)
                    aattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAAAAACCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:1957089/1‑128 (MQ=255)
                    aattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:4461380/1‑127 (MQ=255)
                       taaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:6216569/1‑123 (MQ=255)
                       taaAATACCA‑TAAACTTAATAATTATTATAATGTAGATCATCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:3759719/1‑124 (MQ=255)
                       taaAATACCA‑TAAACTTAAAAAATATTAAAATTTAGAACCTCGTGATCTTTTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTaaa                                                                                                  <  1:6316605/128‑1 (MQ=255)
                        aaaataaaa‑taaaatTAAATATTATTATAATTTATAACCTTGTTATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaactaaaaac                                                                                                  <  1:1883182/128‑9 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:6136106/1‑124 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaataa                                                                                                  >  2:5789904/1‑123 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAATTTATCTTCACATAT‑AAAAAAAAACAAAACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2946053/1‑123 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:1003267/1‑123 (MQ=255)
                         aaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAAAAACC‑‑TTAAAAATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:3845231/1‑128 (MQ=255)
                         aaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:4957368/1‑128 (MQ=255)
                          aaaacaa‑TAAAATTAATAAATTTTAAAATTTACATCATATTGATCTAATTTTTTATTTGTTTAAATTCACAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                               <  1:4415829/122‑1 (MQ=255)
                          aaTAACA‑TATAATTAATATTTTTTTTATTGTTGATTATTGTGATATTTTTTTTTTTTTGTTTTTATTAAAAAAATAAAAAAAAAAAATACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaactaaaaaca                                                                                                 <  2:1601709/128‑10 (MQ=255)
                             taacaaaaaaataataaTTCTTATAAATTATTAACTCGTTTTTTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                             <  1:3903601/117‑1 (MQ=255)
                             taaataaaaaTTAATTATTATTATAATTTATATAATTGTTATAATTTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCC‑‑TTT‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  1:6436430/122‑1 (MQ=255)
                              caa‑TAAAATTAATAATACTTAAAATTTATTTACCCTTTATCTTTTTTTTTATTTTTTTATTTTCA‑AAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                            <  1:3020866/126‑1 (MQ=255)
                                  taaaaataataaATTATATAATTTATATCCTTTTTTTATTTTTTTTTTTTTTTTTATCTTAAAAAAAAAAAAAAAAAAAA‑‑CCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:1788229/122‑1 (MQ=255)
                                  ataaattAATAATTATTATAATGTTTAATCTTGTTATATATTTTTTTATTTTTTAATATTAAAAAATAAAAAAAAAAAAAACCC‑‑‑TTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:5451092/123‑1 (MQ=255)
                                   aaaaataataaTTATTAAAATTTATAACCTCGTGATCTATTTTTTTATTTTTTTAACTTAACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:6551888/123‑1 (MQ=255)
                                      tttAAAAATTTTTATAATTTATATCCTAGGTATAATTTTTTTTATTTTTTTATATTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                   <  2:4302651/127‑1 (MQ=255)
                                       taaatattTTTTAAAATTTATTTCATCTTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                    <  1:61431/126‑1 (MQ=255)
                                        taataaTTCTTATAATTTAGATCCTAGGTATCTTTTTTTTTATTTGTTTAACTTCACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                  <  1:5681947/128‑1 (MQ=255)
                                          aaaatTCTAAAAATTTATATCATCTTGATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  1:527213/126‑1 (MQ=255)
                                            aatTATTATAATTTATAACATTTTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATACCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  1:144541/128‑1 (MQ=255)
                                             atTCTTATAAATTATATCATCTTTATCTATTTTTTTAATTTTTTATATTCAAAAATAAAAAAAAAA‑AAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  1:5429420/128‑1 (MQ=255)
                                                 ttttaATGTACATCCTCGTGATATTTTTTTTTAATTGTTTATATTCACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                        <  1:3355733/125‑1 (MQ=255)
                                                  tataATGTATATACTCGTTATATATTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                        <  1:6245234/128‑1 (MQ=255)
                                                  tataAATTAGATACTATTTATATATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                       <  2:4827969/128‑1 (MQ=255)
                                                    taatgttatatcTCGTGTTTTTTTTTTTTATTTTTTTATATTTACAAAT‑AAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                    <  1:2771092/117‑1 (MQ=255)
                                                           tatacTCGTTATTTATTTTTTTTATTTTTAATCTTAAAAAATAAAAAAAAAAAAACCCCC‑‑‑TAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                               <  2:4092398/124‑1 (MQ=255)
                                                            attctctttatttATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:2413787/116‑1 (MQ=255)
                                                             accTAGTTATATATTTTTTT‑TATTTTTATAATTAAAAAAAAAAAAAAAAAAAACCC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  2:305987/127‑1 (MQ=255)
                                                               ctagttatatataTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                           <  1:5848661/119‑1 (MQ=255)
                                                                tttttttttatttttttattttttTATATTAACAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                          <  1:5508246/120‑1 (MQ=255)
                                                                ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:5492680/120‑1 (MQ=255)
                                                                tatttttatatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AAT‑‑ACAATTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:3966702/120‑1 (MQ=255)
                                                                 tttatatattttttttatttttttaT‑TTAAAAAATTAAAAAAAAA‑AAT‑‑ACAATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:2614631/119‑1 (MQ=255)
                                                                   ttttttATTTTTTTTTTTTTTTATAATAAAAAAAAAAAAAAAAAAAATACC‑‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  2:6012243/123‑1 (MQ=255)
                                                                     atatttttttttATTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                     <  2:5662517/123‑1 (MQ=255)
                                                                       attttttttttttttttTATTTTTAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:6078116/125‑1 (MQ=255)
                                                                        tATTTTTTTTTTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTAATATACCACattttatttt                                                   <  2:3563099/128‑1 (MQ=255)
                                                                         ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                 <  1:5017227/127‑1 (MQ=255)
                                                                         atttttttatttttttATATTAAAAAAT‑AAAAAAAAACAATCACCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  1:4713289/128‑1 (MQ=255)
                                                                           ttttttATTTTTTTTTCTTCCCAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                               <  2:3433574/128‑1 (MQ=255)
                                                                            ttttttttttttTATATT‑AAAAAAAAAAAAAAAACAAAACC‑‑ATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                              <  1:4261651/128‑1 (MQ=255)
                                                                            tttttATTTTTTAAACATAACAAATAAAAAAAAAA‑AAACCACTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                            <  2:5340015/128‑1 (MQ=255)
                                                                             ttttATTTTTTTATATAAAAAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                              <  1:1664023/128‑1 (MQ=255)
                                                                              tttATTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAATAAAC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                            <  1:3542851/128‑1 (MQ=255)
                                                                                 aTTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                          <  1:128032/128‑1 (MQ=255)
                                                                                  ttttttTATATTTAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                         <  1:1595041/128‑1 (MQ=255)
                                                                                     tttttaattaacaAAT‑AAAAAAAAACAATTCCCATT‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:5355512/118‑1 (MQ=255)
                                                                                      ttttatattaaaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:521521/117‑1 (MQ=255)
                                                                                        ttaataaaaaaaaaaaaaaaaaaaaATTCCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  1:2322229/119‑1 (MQ=255)
                                                                                        tatatttaaaaaaaaaaaaaaaaaaATCCCATT‑‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                  <  1:5085059/119‑1 (MQ=255)
                                                                                             tCAAAAATAAAAAAAAAA‑AATACC‑‑ATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                             <  1:671262/128‑1 (MQ=255)
                                                                                               acaAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                          <  1:3462560/128‑1 (MQ=255)
                                                                                               aaaaaTAAAAAAAAAA‑AATAACCTT‑‑‑AAAAAT‑T‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                          <  2:2191329/126‑1 (MQ=255)
                                                                                                caAATAAAAAAAAAAAAAACCC‑‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                            <  1:2164567/128‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                           <  2:2317504/127‑1 (MQ=255)
                                                                                                  aaTAAAAAAAAAA‑AATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  1:3214810/128‑1 (MQ=255)
                                                                                                   aataaaaaaaaaCAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAAAAATATATTGAAATAatatata                        >  1:6391796/4‑128 (MQ=255)
                                                                                                     taaaaaaaaaaaaTACAC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                      <  1:825953/127‑1 (MQ=255)
                                                                                                     taaaaaaaaaCAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACACAATTTCTTAAAAATACCAATTAAACCACAATTTATTTTAAAAATAAGATATTAAAATAatatatata                      >  1:5932381/2‑127 (MQ=255)
                                                                                                          aaaaaCAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCAAATTTATAACAAATTTTATTTTTAAAAAAATAAATTTAAaaaataattataaatta                 >  2:6480724/1‑117 (MQ=255)
                                                                                                                aaaatcacattAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  1:5398661/119‑1 (MQ=255)
                                                                                                                 acaaacccctaaaaaat‑‑taaaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  2:5720784/119‑1 (MQ=255)
                                                                                                                       ccttAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  2:5553998/126‑1 (MQ=255)
                                                                                                                       aataaaaaaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:2477222/124‑1 (MQ=255)
                                                                                                                        cttaaaaattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:3649180/127‑1 (MQ=255)
                                                                                                                        attaaaaatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt      <  1:1757150/127‑1 (MQ=255)
                                                                                                                           |                                                                                                                                 
TAAATAATAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202367‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑