Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT41.9% 417.4 / inf 633intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (88/280);  new base T (155/110);  total (243/390)
Fisher's exact test for biased strand distribution p-value = 1.22e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 750 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202367‑202621
                                                                                                                                 |                                                                                                                                
  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑Ttaaa‑‑aattaaa‑a                                                                                                                            >  2:2503224/1‑128 (MQ=255)
   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑ttaaa‑‑aattaaa‑aa                                                                                                                           >  2:5781148/1‑128 (MQ=255)
   aaaataTAATTAATGTTAATTAAAATACCATAAAATTAAAAATTATATAAAAGTATAACCATTTTATATAATTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAAAAATCCCC‑‑Ataaa‑‑aattaaa‑aa                                                                                                                           <  1:193168/126‑1 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAA‑AAAAAAAAAACAATACC‑‑ATtaaa‑‑aattaaa‑aaa                                                                                                                          >  2:6078116/1‑128 (MQ=255)
     aataGTGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑‑AATTaaa‑aaaa                                                                                                                         >  2:3715898/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTATTTATATTTTTATCTTAACAAAT‑AAAAAAAAACAATCCACTT‑‑‑AA‑‑AAATaaa‑aaaaa                                                                                                                        >  2:4622700/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAACAAT‑‑CAAATTAAA‑‑AATTaaa‑aaaaaa                                                                                                                       >  2:3062564/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAA‑‑AAATtaa‑aaaaaaa                                                                                                                      >  2:1996230/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTATATACACTTGATCTATTTTTTTATATTATAATCTTCACAAAT‑AAAAAAAAACAATAAAC‑‑TAAAA‑‑AAATaaa‑aaaaaa                                                                                                                       >  2:1681779/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAATaaa‑aaaaaaaaaaa                                                                                                                  >  2:2342706/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAAA‑AATAAC‑‑AATAAA‑‑AAATaaa‑aaaaaaaaaaa                                                                                                                  >  2:1198286/1‑128 (MQ=255)
             tAATGTTAATTAAAAAAACATAAAATTATAAATTTTTATAATTTTTATTCTCGTGTTATATTTTTTTATTTGTTTATATTCAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaa                                                                                                                 <  2:6255277/128‑1 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAATT‑‑‑AA‑‑AAATaaa‑aaaaaaaaaaaaaa                                                                                                               >  2:6506798/1‑128 (MQ=255)
               attttaattaaAATAAAAAAAAATTAATAATTAATATAATTTATAACCTCTTTATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATACCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaa                                                                                                               <  1:3142719/125‑1 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaa                                                                                                               >  2:6598191/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCTTTATCTATTTTATTATTTTTTTATCTTCACAAAAAAAAAAAAAAAAAAAAC‑‑‑ATAAA‑‑AAATaaa‑aaaaaaaaaaaaaaa                                                                                                              >  2:2746381/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaa                                                                                                              >  2:5870503/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaa                                                                                                              >  2:758814/1‑128 (MQ=255)
                ggTTAATTAAAATACCAT‑AACTTAATAATTCTTATAATGTATATCATCTTGATCTATTTATTTATTTATTAATCTTAAAAAATAAAAAAAAAAAAA‑‑‑AAAATT‑AA‑‑AAATaaa‑aaaaaaaaaaaaaaaaa                                                                                                            >  2:3889322/1‑128 (MQ=255)
                ggTTAATTAAAATACAAAAAAATTAATAATTCTTATAATTTATATCCTCGTGTTCTTTTTTTTTTTTTTTTTATCATAACAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaa                                                                                                              <  1:5593111/128‑1 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTTATTATTTTATCTTCAAAAATAAAAAAAAAA‑AATAAAC‑‑ATAAA‑‑AAATaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                          >  2:4113760/1‑127 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAAAAA‑‑‑CCAAATAAA‑‑AATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                          >  2:221386/1‑127 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                          >  2:5308031/1‑127 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                          >  2:6181273/1‑127 (MQ=255)
                      ttatAATATCAAAAATTTAATAATTATAATAATTTATATCAAATTTTTATATTTTTTTATTTGTTTATTTTAAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTaa                                                                                                       <  1:6003011/128‑1 (MQ=255)
                      ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AAT‑‑AAAATTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:2966688/1‑125 (MQ=255)
                       aaaaaTATAATAAAATTAATATTTATATTAATTTATATACACTTTATTTTTTTTTTTATTTGTTTA‑ATATAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTaaa                                                                                                      <  1:3048629/127‑1 (MQ=255)
                        aaaaatcaaTAAAATTAATAATTATTATAATTTATATAATAGTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTaaa                                                                                                      <  1:5742862/120‑1 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAA‑‑AAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:1003267/1‑123 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑‑AAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:3563099/1‑123 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATAACC‑‑TTAAA‑‑AATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:520586/1‑128 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:4957368/1‑128 (MQ=255)
                          aaTAACATATAATTAATATTTTTTTTATTGTTGATTATTGTGATATTTTTTTTTTTTTGTTTTTATTAAAAAAATAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTaaa‑aaaaaaaaaaaaaaactaaaaaca                                                                                                     <  2:1601709/128‑10 (MQ=255)
                           ataaaaTAAAAATAATAAATATTATAATTTATATCATCTTTTTATAATTTTTTATTTTTTTATAAT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:3692356/123‑1 (MQ=255)
                           aaaaaaataaattAAAAAATCTTTTAATTTATTTCCTCGTTATCTTTTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAACAATCCCC‑TTAAAA‑‑ATTAAAA‑AAAAAAAAAAAAAAAAAACTaaaaa                                                                                                    <  1:3954254/117‑1 (MQ=255)
                            tatcATAAAATTATTAATTATTAAAATTTATTTCATGGTTTTGTTTTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAgaacaa                                                                                                 <  1:3787751/125‑1 (MQ=255)
                            tataaTAAAATTAATAATTATTATAATTTATATCCTTGTTTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                                 <  2:1819405/124‑1 (MQ=255)
                              acaaaaaCTTAATTATTTTTTTATTGTATATCCTAGTTTTGTTTTTTTTTATTTTTTTTTTTTTAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑‑‑‑TTAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                            <  2:533722/124‑1 (MQ=255)
                                aaaaaaTTAATAATTATTATAATTTATATACTCTTTATTTATTTTTTTATTTTTTTATTTTCAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                             <  1:6059729/126‑1 (MQ=255)
                                      ataataaTTATTAAAATTTATATACACTTGATATATTTTTTAATTTGTTTATATAAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                       <  1:2731440/127‑1 (MQ=255)
                                       taaaaaTTTTTAAAATTTATATACTCGTTATTTATTTTTTTATTTTTTTATAATCAAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                       <  2:3571982/128‑1 (MQ=255)
                                        aataatTATTATAATTTACATACTCTTTATCTTTTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAATTCTATTTCt                                                                                      <  2:5247926/128‑1 (MQ=255)
                                         aaaatTCTAAAAATTTATATCATCTTGATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                    <  1:527213/126‑1 (MQ=255)
                                           aatTATTATAATTTAGATCCTCCTTATATATTTTTTTATTTTTTTATCTT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                  <  1:5509181/128‑1 (MQ=255)
                                              tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACACAAATTAATAAAAtaac                                                                             >  1:5400825/1‑125 (MQ=255)
                                                ttATAATTTATAAACTTGTGATTTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑‑AAAT‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                           <  1:6591033/128‑1 (MQ=255)
                                                        tacaaactattGATATATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                     <  1:1765303/118‑1 (MQ=255)
                                                         attacatagttaTCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAACAATCCCC‑TTAAAA‑‑ATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                      <  1:6405270/117‑1 (MQ=255)
                                                          gATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACAAAAAACAAACACTAATAATTAAAAATcccacatataca                                                                   >  2:4969688/1‑119 (MQ=255)
                                                            taatttttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:5436689/117‑1 (MQ=255)
                                                               ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:5492680/120‑1 (MQ=255)
                                                               tctttttatatttttttattttttTATCTTCAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:4495538/120‑1 (MQ=255)
                                                               tcttGATCTATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAA‑‑CCC‑ATTAAA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:5068706/125‑1 (MQ=255)
                                                               tcgttaaatATTTTTTTAATTGTTAAACTTCACAAAT‑AAAAAAAAACAAACCCC‑‑‑TAAA‑‑AAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:3535805/120‑1 (MQ=255)
                                                                tttGATATATTTTTTTATTTTTTTAT‑ATAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:5409584/126‑1 (MQ=255)
                                                                ctgtttatttttttttATTTTTTTTAATTAAAAAATAAAAAAAAAA‑TATACCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:571503/119‑1 (MQ=255)
                                                                  tttttatattttttttttttttATAATCAAAAATAAAAAAAAAAAAATAAC‑‑ATTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:6102572/120‑1 (MQ=255)
                                                                  ttatatATTTTTTTTTTTTTTTTTATAAAAAAATAAAAAAAAAAAAAACCC‑‑TTAAAA‑‑ATAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:4435655/123‑1 (MQ=255)
                                                                   taatattttttttATTT‑TTTATCTTTACAAATAAAAAAAAAA‑AATCACCTT‑‑‑AA‑‑AAAT‑‑T‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:3311908/122‑1 (MQ=255)
                                                                   taTCTATTTTTTTATTTTTTTATCAT‑AAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                            <  1:4010445/127‑1 (MQ=255)
                                                                    atatttttttttATTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                         <  2:5662517/123‑1 (MQ=255)
                                                                      ttATTTTTTTTTTTGTTTATAATTA‑AAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:235494/127‑1 (MQ=255)
                                                                        ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:5017227/127‑1 (MQ=255)
                                                                        atttttttatttttttAT‑ATAAAAAATAAAAAAAAAA‑AAT‑‑ACTCTTAAA‑‑ATATTAA‑AAAAAAAAAAATAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:417248/128‑1 (MQ=255)
                                                                          ttttttATTTTTTTTTCTTCCCAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:3433574/128‑1 (MQ=255)
                                                                          ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTATA‑‑AATTAAA‑AAAAAAATAAAATAAACA‑TAAATACAAAACTGATTTGTTAAATATACGAATTATACCAAaatttaatttataa                                                   >  1:5661545/1‑124 (MQ=255)
                                                                             tttatttttttattttCA‑AAAAAAAAAAAAAAAAATCCCCTTAAAAA‑‑TTAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:831293/128‑1 (MQ=255)
                                                                              ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:1463743/128‑1 (MQ=255)
                                                                              ttATTTTTTTAAATTCAAAAAT‑AAAAAAAAACAATACCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:5896547/128‑1 (MQ=255)
                                                                               tATTTTTTTATCATAACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:6252229/128‑1 (MQ=255)
                                                                                aTTTTTTTATTTTAAAAAAAAAAAAAAAAAAAAACCC‑‑‑‑TAAA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:2194318/128‑1 (MQ=255)
                                                                                aTTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                              <  1:128032/128‑1 (MQ=255)
                                                                                 ttttttTATATTTAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:1595041/128‑1 (MQ=255)
                                                                                    tttttataataaaaaaaaaaaaaaaaaaATACCCTTAAAAAATAAAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:5795339/116‑1 (MQ=255)
                                                                                    tttttaattaacaAAT‑AAAAAAAAACAATTCCCATT‑‑AA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  1:5355512/118‑1 (MQ=255)
                                                                                     tttATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAA‑AAAAAATTTTTATTAAAATTACATATTATAAAAAATATTATATTAaaaaaatataattta                                       >  1:3426799/1‑117 (MQ=255)
                                                                                      ttATATTAAAAAATAAAAAAAAAA‑AATACCCTTT‑‑AA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                        <  1:2509208/128‑1 (MQ=255)
                                                                                        tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:1667056/120‑1 (MQ=255)
                                                                                        ataataacaAATAAAAAAAAAA‑AATACCC‑‑TTAAA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:6348724/122‑1 (MQ=255)
                                                                                         tCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTAATAAAATTACAAATTAAAAAACAATTTATTTATAAAATAATATAtttaaaa                                    >  1:6178682/1‑123 (MQ=255)
                                                                                         attttaaaaaaaaaaaaaaaaaaaaACCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  2:5037623/121‑1 (MQ=255)
                                                                                          tattaaaaaaaaaaaaaaaaaaATACAC‑‑TTAAA‑‑AAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:2041740/122‑1 (MQ=255)
                                                                                                    taaaaaaaaaaaaTACAC‑‑TTAAA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:825953/127‑1 (MQ=255)
                                                                                                     aaaaaaaaaCAAAACCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:764535/128‑1 (MQ=255)
                                                                                                      aaaaaaaaCAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatta                         <  1:4436571/128‑3 (MQ=255)
                                                                                                          aaaaCAATCCCC‑‑TTAAA‑‑AATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAAAAAACTCTATTTATTAAAATTACATATTTTAACAAATTTTATTTTTAAAAAAAAATATTTAAATAATATATATATAatat                    >  1:428032/1‑128 (MQ=255)
                                                                                                            aaCAATCCCCTT‑‑‑AA‑‑AAATTAA‑AAAAAAAAAAAAAAAAAA‑TAAAAAAAAACAATATTTATTAAAATACCATATTAAACAAAATTTTATTTTTAAAATAATATTTTAAAATAATAAAAATATAatatata                 >  2:5447106/1‑128 (MQ=255)
                                                                                                             aaaaaattaaattAAA‑‑AAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                   <  1:2454047/117‑1 (MQ=255)
                                                                                                               aaaataaccttaaa‑‑aattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:2929304/119‑1 (MQ=255)
                                                                                                               aaaaacaccataaa‑‑aaataaa‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:1326074/118‑1 (MQ=255)
                                                                                                                  caccccttATA‑‑AATTAAA‑AAATAAAAAAAAAAAAAACTAAACACAAACTCTATTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  2:6022799/122‑1 (MQ=255)
                                                                                                                  ataacattaaa‑‑aattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  1:6476545/122‑1 (MQ=255)
                                                                                                                  aataccaataa‑‑aaat‑aa‑aaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAGAATAAGATATTGACATAATATATATCTAATATATataa              <  2:6363911/119‑1 (MQ=255)
                                                                                                                    taagcataa‑‑aaataaataaAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTTACATAATATATATCTAATATATataa              <  1:4631965/121‑1 (MQ=255)
                                                                                                                     acaattaa‑‑aaattaa‑aaaAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATTAAAAAATAAAAAAAATATTTTTTTTAAAATAATAATTAGAAATAATATATTTATaataaataatataa           >  2:5124234/7‑122 (MQ=255)
                                                                                                                      ccttAAA‑‑AAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:5553998/126‑1 (MQ=255)
                                                                                                                         ttaa‑‑aaattaa‑aaaAAAAAAAAAAAAAAAAAAAAAACAAAATATTTTTATTAAAATTCCATATTATACCAAATTTTATTTTTAAAAAAAAATTTTTAAATAATATTAAAATAATATATTTAATAatat        >  2:6223815/3‑128 (MQ=255)
                                                                                                                          taa‑‑aaattta‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata       <  1:711726/127‑1 (MQ=255)
                                                                                                                          taa‑‑aaataaa‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata       <  1:4877805/127‑1 (MQ=255)
                                                                                                                                 ataaa‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCt  <  2:3316277/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202367‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑