Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T54.5% inf / inf 928intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (225/196);  new base T (401/103);  total (628/300)
Fisher's exact test for biased strand distribution p-value = 2.45e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1155 total aligned reads displayed.

TTTAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022
                                                                                                                                        |                                                                                                                                   
tttAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTg                                                                                                                                      >  1:5130810/1‑128 (MQ=255)
ttaatttttttttAT‑AAAAAAAAATAAAAATTTTTAATTTAAAGACATTTTTAAAAAAGCCTATGTTATAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTAAAATTGTA‑TTTTTTA‑GG‑‑C‑‑TTg                                                                                                                                      >  2:3688951/6‑128 (MQ=255)
  tAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTATTA‑GG‑‑A‑‑TTG‑‑‑tt                                                                                                                                 >  1:4876587/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt                                                                                                                                 >  2:2190801/1‑128 (MQ=255)
   aaTTTTTTTTAT‑AAAAAAAAATAAAAATTTTTAATTTTAATCCATTTTTAAAAAATCCTATTTTCTATGCTTTTTA‑TTATACTTTTAAACATTACAACGCTTTAAAATTGTA‑TTTTTTT‑TG‑‑C‑‑TTG‑‑‑tt‑t                                                                                                                               <  2:1536691/128‑1 (MQ=255)
    aTTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tt                                                                                                                              <  1:5623393/128‑1 (MQ=255)
     ttttttttAA‑AAAAATAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑ttt                                                                                                                             <  1:6523877/128‑1 (MQ=255)
       ttttttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑ttttt                                                                                                                           >  1:1598160/1‑128 (MQ=255)
         ttttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑ttttttt                                                                                                                         >  1:5500227/1‑128 (MQ=255)
          tttAT‑AAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTAAAAAAGCCTATTTTATAGGCTTTTTA‑TTATAATTATCAACATTAAAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tttttttt                                                                                                                        <  1:2445812/128‑1 (MQ=255)
            cat‑aAAAAAAAATAAAATTTTTTTATTTAAATCATTTTTTAAAAAACAATTTTTTTTTTGCTTTTTT‑TTATACTTATTAACATTAAAAAGCTTTCAAATTTTA‑TTTTTTT‑GG‑‑t‑‑ttt‑‑‑tt‑tttttttttt                                                                                                                      <  2:1837294/127‑1 (MQ=255)
             at‑aAAAAAAAATAAAAATTTTTCATTTAAATCCATTTGTAAAAAAGCTTATCTTCTTGGCTTTTTA‑TTATAATTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑ttttttttttt                                                                                                                     <  1:6621411/128‑1 (MQ=255)
                taaaaaaaaTTAAAATTTTTCATTTTAAGCCATTTGTAAAAAAGACTATGTTATAGGCTTTTTA‑TTATACTTATCAAAATTAAAAATCTTTAAAAGTTTT‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑ga‑ttttttttttttt                                                                                                                   >  1:4295010/2‑128 (MQ=255)
                taaaaaaaaTAAAATTTTTTAATTTAAATCATTTTTTAAAAATGCATTTTTTTTTGGGTTTTTT‑TTTTATTATTAAACATTAAAACGCTTTAAAATTTTA‑TTTTTTT‑GG‑‑G‑‑TTG‑‑‑tt‑ttttttttttttt                                                                                                                   <  2:5973476/127‑1 (MQ=255)
                 aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tttttttttttttt                                                                                                                  >  1:3621234/1‑128 (MQ=255)
                 aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tttttttttttttt                                                                                                                  >  2:5510586/1‑128 (MQ=255)
                   aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tttttttttttttttt                                                                                                                >  1:5197151/1‑126 (MQ=255)
                        ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑tt‑tttttttttttttttttttaa                                                                                                           >  2:543270/1‑121 (MQ=255)
                        aaaaaaaaTTTTAATTATAACCAATTTTTAAAAAATAATATTTTCTATTCTTTTTA‑TTTTTATTATAAACATTAAAACCATTTAAAAGTTTA‑TTTTTTATGT‑‑T‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑aaaa                                                                                                           <  2:1703577/126‑1 (MQ=255)
                          aaaaatTTTTTATTTATATCGTTTTTTTAAAAAGTCTATGTTTTAGGTTTTTTA‑TTATATATATCAAAATTTTAACCCTTTCAAATTTTA‑TTTTTTT‑TG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATa                                                                                                        <  2:3905609/128‑1 (MQ=255)
                           aaaatTTTTATTTTAATCCCATTTTTTAAAAAGACTTTGTTTTAGGTTTTTTT‑TTTTAATTATCAAAATTACAACGCTTTAAAAGTTTT‑TTTTTTA‑TG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATa                                                                                                        <  2:5065371/128‑1 (MQ=255)
                            aaatTTTTAATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTA‑TTATAATTATCAACATTACAACGCTTTCAAAGTGTT‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATaa                                                                                                       <  1:614399/128‑1 (MQ=255)
                              atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAATaaa                                                                                                      >  2:800755/1‑128 (MQ=255)
                               tttttAATTTAAATCCATTTTTAAAAAAGCCTATGTTCTATGGTTTTTT‑TTTTAATTATAAAAATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGt                                                                                                   <  1:456589/128‑1 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTTT‑TAaaaaaaaaaat                                                                                                  >  2:6219470/1‑125 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACACTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATaaaatt                                                                                                   >  1:5454944/1‑126 (MQ=255)
                                ttttCATTTAAAGCAATTTGTAAAAAACCCTAAGTTTAATGCTTTTTA‑TTATACTTATCAACATTAAAACGCTTTCAAAGTGTA‑TTTTTTT‑GG‑‑CT‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGt                                                                                                   <  2:3538196/128‑1 (MQ=255)
                                 tttaatttaaATACTTTTTTAAAAAATCTTATGTTTTTTGTTTTTTA‑TTATACTTTTCAAAATTAAAAAGATTTCAAATTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGt                                                                                                   <  1:1298678/128‑1 (MQ=255)
                                  ttgaTTTAAAGCCATTTGTAAAAAAGCCTATGTTCTTGGGTTTTTT‑TTTTAATTTTAATAAATACAACCCTTTCAAATTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTa                                                                                                  <  1:763909/125‑1 (MQ=255)
                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGAGTA‑TTTTTTA‑GG‑‑C‑‑TTC‑‑‑TT‑TATTTTTTTTTTTAGT‑AAAAAAAAAAGTAAg                                                                                                >  1:2755331/1‑128 (MQ=255)
                                   ttaTTTAAATCCATTTGTAAAAAATCCTATTTTCTAGGATTTTTT‑TTATAATTATTAACATTAAAACGATTTCAAAGTTTA‑TTTTTTA‑GG‑‑C‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGa                                                                                               <  1:100803/126‑1 (MQ=255)
                                       ttatatcaaTTTTTAAAAAATTCTATTTTATTTGTTTTTTA‑ATATATATATTAAAATTAAAAAGTTTTTTAATTGTT‑TTTTTTT‑TG‑‑CT‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGAttt                                                                                            <  1:3808280/120‑1 (MQ=255)
                                       ttAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTT‑TTATAATTATCAAAATTAAAACGCTTTTAAATTGTA‑TTTTTTA‑GG‑‑C‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTg                                                                                           <  1:6061425/128‑1 (MQ=255)
                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTCCAACGCTTTCAAAGTGTA‑TTTTTTT‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑TAAAATTAAATTTATAtttt                                                                                           >  2:3380560/1‑127 (MQ=255)
                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAACTGTA‑GTATTTA‑TG‑‑C‑‑TTGA‑‑TT‑TTTTTTTTTTTTTTTT‑AAAATAAAAAGTAATATTTg                                                                                           >  2:4367638/1‑128 (MQ=255)
                                            gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAAAATTTGTATc                                                                                       >  1:5710075/1‑128 (MQ=255)
                                                 ttGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑T‑AAAAATAAAAATAAAATTTGGATCAACCaaa                                                                                >  2:5754407/1‑128 (MQ=255)
                                                   ttaaataattcTATTTTTTAGTTTTTTTT‑TTATAATTTTTAAAATTAAAACGCTTTTAAATTTTA‑TTTTTTT‑TG‑‑CTTTTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaa                                                                                 <  1:5988303/118‑1 (MQ=255)
                                                   gTATAATAGCCTATGTTCTAGGCTTTTTT‑TTATACTTATCAACATTACAAATCTTTAAAAGTGTA‑TTTTTTT‑GT‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaa                                                                                <  1:6449484/128‑1 (MQ=255)
                                                     aaaaatGACTATTTTATAGGCTTTTTA‑TTATAATTTTAAAAATTAAAAAGCTTTCAAATTGTT‑TTTTTTA‑TG‑‑CTTTTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  2:5804972/128‑1 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAAAATTTTTATAAAACAAAAatat                                                                           >  1:43777/1‑128 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATATTTGGATAAAACAAAAatatata                                                                        >  1:2132921/1‑127 (MQ=255)
                                                             cTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAAGTAATATTTGTATCAACCAAAAATATATaaa                                                                      >  1:5925860/1‑128 (MQ=255)
                                                             cTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑‑TTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑TAAAATAAAATTAAGATTTTGATCAAACAAAAATTTATaaaa                                                                     >  1:5385968/1‑128 (MQ=255)
                                                              tattttttttgttttttA‑TTTTTTTTATCAAAATTAAAAACCTTTAAAAGTTTATTTTTTTT‑GG‑‑T‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCaaa                                                                     <  2:4202994/116‑1 (MQ=255)
                                                              tATTTTATATGCTTTTTA‑TTATAATTATCAAAATTAAAACTCTTTAAAAGTGTA‑TTTTTTA‑TG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  1:5063387/128‑1 (MQ=255)
                                                              tATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑T‑AAAAATAAAAGTAAATTTTGTATAAACCAAAAATTTTTaaaaaa                                                                   >  1:6276565/1‑128 (MQ=255)
                                                               aTGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTT‑TTTTTTTTTTTTTTTT‑AAAAATAAAAGTTATATTTGGTTAAACCAAAAATATATaaa                                                                      >  1:3490899/1‑128 (MQ=255)
                                                               aTGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAAGTAATATTTTGTAAAACAAAAAATATATAaaaa                                                                    >  2:600834/1‑128 (MQ=255)
                                                                ttttttattcTTTTTT‑TTTTATTTATAAAAAATAAAAAGCTTTTAAATTGTT‑TTTTTTA‑TG‑‑CT‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                   <  2:6069276/119‑1 (MQ=255)
                                                                  ttatattatttttATTTATA‑TTATCTAAATTAAAAGTCTTTTAAATTGTA‑TTTTTTA‑TG‑‑C‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                <  1:4969462/120‑1 (MQ=255)
                                                                  ttCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAAAAAAATTAAGATTTTGATCAACCAAAAATTTATaaaaaata                                                                 >  1:2003273/1‑126 (MQ=255)
                                                                   tgttgtatttttA‑TTATAATTATAAAATTTAAAAAGATTTATAAGTGTA‑TTTTTTT‑GGT‑T‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                <  1:2840138/121‑1 (MQ=255)
                                                                   tCTAGGCTTTTTA‑TTATACTTATCAACTTTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAAGTAATATTTTGATCAAGCAAGATTTTATAAAAAAAAt                                                                >  1:3371448/1‑128 (MQ=255)
                                                                   catAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑T‑AAAAATAAAAGTAATATTTGGATAAACCAAAACTATATCAAAAAAATTa                                                              >  1:1139496/3‑128 (MQ=255)
                                                                    cTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAATAAAAATTTGTATAAACAAAAAGAATAAAAAAAAAAtt                                                               >  1:2972251/1‑128 (MQ=255)
                                                                    cTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTGTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATATTTGGTTCAACCAAAACTATATCAAAAAAAtt                                                               >  2:1446837/1‑128 (MQ=255)
                                                                     tAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTT‑TTTTTTTTTTTTTTGT‑TAAAATAAAATTTATATTTTGATAAACCAAAACtattaaaaataaat                                                                >  1:5284422/1‑117 (MQ=255)
                                                                     tAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑GTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑TAAAATAAATGTATAATTTGGATCAACAAAAAAAATAAATAAAAAATTaa                                                             >  2:5383403/1‑128 (MQ=255)
                                                                      tttatttttA‑TTATTTTTATGATCTTTAAAAAGCTTTGAAAGTGTA‑TTTTTTT‑TG‑‑T‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                             <  2:5610181/124‑1 (MQ=255)
                                                                      aGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAAGATTTGTATAAACCAAAACTATATAAAAAAAATTaa                                                             >  1:4788079/1‑128 (MQ=255)
                                                                      aGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAAAAAAAGTAATATTTGTATAAACAAAAACTATATAAAAAAATTTaa                                                             >  1:465940/1‑128 (MQ=255)
                                                                        gCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATATTTTGATAAAACAAAAAATTATAAAAAAAATTaaaa                                                           >  2:1108689/1‑128 (MQ=255)
                                                                         cTTTTTA‑TTTTACTTTTAAAAATTTAAAATTTTTAAATTTTTA‑TTTTTTA‑GT‑‑T‑‑TTG‑‑‑‑T‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaa                                                        <  1:1893914/128‑1 (MQ=255)
                                                                           ttttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAAATAAAATTTGTATAAAACAAAACAATATAAAAAAAATTaaaaaa                                                         >  2:5669003/1‑128 (MQ=255)
                                                                            tttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAAAATTTTTATAAAAAAAAAAAATAAAAAAAAATTTaaaaaaaa                                                       >  1:3951573/1‑128 (MQ=255)
                                                                            tttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAAAATTTTGATAAACCAAAACTATAAAAAAAAAATTaaaaaaaaa                                                      >  2:5903645/1‑127 (MQ=255)
                                                                            tttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTT‑T‑AAAAATAAAATTAATATTTGTAACAACAAAAAATATAAAAAAAAAATTaaaaaaaaaa                                                     >  1:6352074/1‑126 (MQ=255)
                                                                               a‑ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTGGTTAAACAAAAACATTATCAAAAAAATTTAAAAAAAt                                                      >  2:4619558/1‑128 (MQ=255)
                                                                               a‑ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAATTAATATTTGTAAAAAACAAAAAAATATCAAAAAAATTaaaaaaattgtt                                                   >  2:3464061/1‑123 (MQ=255)
                                                                                   ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTGGATAAACCAAAAATAAATAAAAAAAATTAAAAAAAAtattt                                                  >  1:4091503/1‑128 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAATATTTTGAAAAACCAAAAATTTTTAAAAAAAAATaaaaaaaaattttt                                                 >  1:1364921/1‑122 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAATATTTGGATAAACCAAAACTATATAAAAAAAATAAAAAAAAAaattttat                                               >  2:5183961/1‑127 (MQ=255)
                                                                                       ttATCAACATATCAACGCATTCAAAGTGTA‑TTTTTTT‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                             <  2:6319302/128‑1 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAAGATTTGGATAAACAAAAAATATTTAAAAAAAATTAAAAAAAAtattttatttt                                            >  1:164965/1‑127 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑‑T‑TTTTTTTTTTTTTTGT‑AAAAATAATAGTAAGATTTGGATCATCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTGAg                                          >  2:5120351/1‑128 (MQ=255)
                                                                                        tATCAAAATTATAAAGTTTTAAATTTTTA‑TTTTTTA‑TT‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                            <  1:5782433/128‑1 (MQ=255)
                                                                                         aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTTATATTTGTTTAAACAAAAAATAAAAAAAAAAAATTAAAAAAAAttatttaatt                                             >  2:1947678/1‑128 (MQ=255)
                                                                                          tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAATATTTGGATAAACCAAAAATATATAAAAAAAATAAAAAAAAAtattttattttat                                          >  1:1776095/1‑125 (MQ=255)
                                                                                            aaaaTTATAATGTTTTAAAATTGTT‑TTTTTTA‑GGTTT‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGt                                         <  2:729041/125‑1 (MQ=255)
                                                                                             aCATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAAAATTTTAATAAACAAAAAATAAAACAAAAAAATTAAAAAAAAAattttattttatttt                                       >  2:2364533/1‑128 (MQ=255)
                                                                                             aCATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAATTAAGATTTGGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAAAAATTTattttatttt                                       >  1:5860676/1‑128 (MQ=255)
                                                                                                ttACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAAAATTTTTTACAAACAAAACAAT‑TAAAAAAAAAATAAAAAAATAGTTTATGTGATTTTCCAAt                                  >  1:4207862/1‑128 (MQ=255)
                                                                                                 tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAAGTAATATTTGGTTCAACCAAAACTATTTAAAAAAAAATAAAAAAAATAATTTATTTTATGTTCaa                                    >  1:1507176/1‑128 (MQ=255)
                                                                                                 tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑‑T‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAATATATTTTAGTTTAGTTTGAAAtg                                 >  2:3206238/1‑127 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTTTTT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAATTAAAATTTTTAAAAAACAAAAATATAAAAAAAAAATTAAAAAAAATATTTTATTTAAATTTAAAAta                                 >  1:904226/1‑127 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAAGTAAAATTTGGTTAAACAAAAAATAAAAAAAAAAAATTAAAAAAAATAGTTTATTTGTTTTTAAAATATg                               >  1:2248735/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑‑‑‑TTTTTTTTTTTTTTGA‑AAAAATAAAATTAAAATTTGATTAAACCAAAAATTTATAAAAAAAATTAAAAAAAATATTTAATTTTATTTTaaaaaatgaaa                            >  1:2576240/1‑121 (MQ=255)
                                                                                                      cGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAATTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATAATTTAGTTTATTTTCAAATCTg                               >  1:3099862/1‑128 (MQ=255)
                                                                                                       gCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCat                            >  1:3752517/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAATTAAGATTTGGAAAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAATATGAata                           >  1:2338466/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAAATTTGGAAAAACCAAAAATATTAAAAAAAAATAAAAAAAAATTGTTTTTTTGAGTTTAAAAACTgaaaat                          >  2:250993/1‑123 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAATAAAAGTAAAATTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATGCatata                         >  2:2905377/1‑128 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTTT‑AAAAAAAAAATAAAGATTTTGATCAACACAAAATAAATCAAAAAAATTAAAAAAAAAAGTTTAGGTGAGTTTCAAATAAGCataat                         >  2:4964714/1‑126 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAAATTTGGAAAAACCAAAACTAATTAAAAAAAAATAAAAAAAAAAATTTATTTTAGTTTAAAATCAGCatatat                        >  2:6411199/1‑128 (MQ=255)
                                                                                                            tattatttttttttttA‑GG‑‑A‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatata                         <  2:615943/118‑1 (MQ=255)
                                                                                                             aaaGTGTA‑TTTTTTA‑GG‑‑C‑‑TTGTT‑TT‑TTTTTTTTTTTTTTTT‑TAAAAAAAAATTTATATTTGTATAAAAAAAAAATAATAAAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTCAAAAGGGCatattt                        >  2:6549327/1‑126 (MQ=255)
                                                                                                                 gttatttttttG‑GT‑‑T‑‑TTT‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                   <  2:5261463/123‑1 (MQ=255)
                                                                                                                    a‑TTTTTTA‑GG‑‑C‑‑TTGT‑‑TT‑TTTTTTTTTTTTTTAT‑AAAAATAAAAGAAAAATTTGTATCAACAAAAAAAATAAAAAAAAAATAAAAAAAAATATATTATTTTAGTTTCAAAAATGAAAATATAATACaaa                >  1:3237142/1‑128 (MQ=255)
                                                                                                                              tttttggttG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt           <  2:2042429/121‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                   
TTTAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑‑TTG‑‑‑TT‑TTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑