| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP016816 | 20,605 | C→T | Q64* (CAG→TAG) | JCVSYN2_00070 → | tetracycline resistance ribosomal protection protein Tet(M) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 20,605 | 0 | C | T | 99.2% | 5474.3 / NA | 1850 | Q64* (CAG→TAG) | JCVSYN2_00070 | tetracycline resistance ribosomal protection protein Tet(M) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (876/945); minor base A (8/7); total (896/954) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1865 total aligned reads displayed.
GCTTATTATATAACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGATGGCGT > CP016816/20480‑20729 | tattctATAACAGGGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTgg < 1:5918304/128‑1 (MQ=255) taatatataACAGTGGAGCGATTACAGAATTAGGAAGCGTGGAAAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTgg < 2:1531849/125‑1 (MQ=255) ttatATAACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGa < 1:1903315/128‑1 (MQ=255) taACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATa > 1:5284815/1‑128 (MQ=255) taACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATa < 1:2194865/128‑1 (MQ=255) cctgTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACg < 1:3033473/125‑1 (MQ=255) tGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAgg < 2:6443920/128‑1 (MQ=255) gAGCGATTACAGAATTCGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTg < 1:4483616/128‑1 (MQ=255) gAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTg > 2:1660042/1‑128 (MQ=255) aGCTATTACAGAATTAGGAAGCGGGGACAACGGTCCAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGa < 2:4442138/128‑1 (MQ=255) gATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTAGAATTCAGACAGGAATATCCTCATTTTAGTGGGAAAATACGAAGGGGaccc > 2:1925847/1‑125 (MQ=255) ttACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGATAATACGAAGGTGAAcatc > 2:756170/1‑128 (MQ=255) ttACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTAAGAGAGGAATTACAATTCAGACATGAATAACCTCTATTTAGTGGGAAAATACGAAGTTGAAcatc > 1:421040/1‑128 (MQ=255) tACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAAcatca < 2:865839/128‑1 (MQ=255) cAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATa < 1:4976222/128‑1 (MQ=255) aGACTTCGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAg < 1:1521091/128‑1 (MQ=255) taTTAGGACTCTTGGACAAAGGTACACCGATGACGGATAATACGTTTTTAGATCTGAAGAGAGGAATTACAATTCAGACTGGAATAACCTCTTTTTAGTGGGAAAATACGAATGTGAACATCATAGac < 2:6233247/127‑1 (MQ=255) aaTTATGAAGCGGCGACATAGGTACAACGAGGACGGATAATTCGCTTTTAGAACGTCAGAGAGGAATTACTATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGac < 1:1145139/128‑1 (MQ=255) aaTTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGac < 1:4078527/128‑1 (MQ=255) ttAGGAAGAGTTGACAAATGTACAACGAGGAAGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGacac < 1:743911/128‑1 (MQ=255) tAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGATTTAAGAACGTCAGACAGGTAATACAATTCAGACAGGAATAACCTCTATTTAGTGTGAAAAAACGAAGCTCAACATCTTAGacact > 2:3435172/1‑127 (MQ=255) gAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCa < 1:2295477/128‑1 (MQ=255) aGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAgg > 2:4035130/1‑128 (MQ=255) aGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAgg < 2:5395265/128‑1 (MQ=255) gCGTGGACAACGGTACAACGAGGACGGATAATACGCTATTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGa < 1:2051800/128‑1 (MQ=255) gCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGTATAACCTCTGTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGa > 2:4830380/1‑128 (MQ=255) gCGTCGACAAAGGTACAACGAGGACGGATAATACGCTTTTGGAACGGCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTTGGAAAATACGAAGGTGAACATCATAGACACGCCAGGa < 2:3560563/128‑1 (MQ=255) cGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGTAc < 2:2497183/128‑1 (MQ=255) cGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGAc > 1:6190519/1‑128 (MQ=255) cGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGGCAGAGAGGAATTACAATTCAGACAGGAATACCCTCTGTTTAGTGGGAAAATACGCAGGTGAAGCTCATAGACCCGACCGGAc > 2:5120566/1‑128 (MQ=255) gTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAAcatcat < 2:1814989/113‑1 (MQ=255) tGGACAACGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACat < 1:1358489/128‑1 (MQ=255) tGGAC‑AAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATACCCGCTTTTTAGTGGGAAAATACGAAGTTGAACATCATAGACACGCCAGGACata > 1:4853113/1‑128 (MQ=255) ggAGAATGGTACAACGAGGACGGATAATACGCTTTTAGAAAGTCAGAGAGTAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACata < 2:2439895/128‑1 (MQ=255) gACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGTGAATATACGAAGGTGATCATCATAGACACGACATGACatat > 1:5186698/1‑128 (MQ=255) gACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACatat > 2:5237146/1‑128 (MQ=255) gACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACatat < 1:3981134/128‑1 (MQ=255) aCAAAGGTACAACGAGGTCGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAAATCAGACAGGAATAACCTCTTTTTAGTGGGTAAATAAGAAGGTGAACATCATAGGCCGGCCAGGAGAAATg > 2:2611986/1‑128 (MQ=255) aaaTGTACAACGATGACGGATAATACGCTTTTAGAACGGCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGa < 1:6007535/128‑1 (MQ=255) aaaGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACATTTCAGACAGGATTAACCTCTTTTTAGTGGGAAAATAGGAAGGTGAACATCAAAGACTCGCCAGGACATATgta > 2:5008369/1‑126 (MQ=255) ggTACTACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGAttt < 2:2976623/128‑1 (MQ=255) ggTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGGATTACAAAACAGACAGGAATAACCTCTTTTTACTGGGAAAATACGAAGGTGAACATCATAGCCGCGCCAGGACAGATGGAttt > 1:2834338/1‑128 (MQ=255) ggTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATATCCACGCCAGCTCATATGGAttt > 2:5961869/1‑128 (MQ=255) tACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCt < 1:6295271/128‑1 (MQ=255) tACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCt < 1:6512750/128‑1 (MQ=255) cAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTa > 1:5090654/1‑128 (MQ=255) aaCGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAg < 1:5729574/128‑1 (MQ=255) aaCGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAAATCAGACAGGAATAACCTCCTTTTAGAGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATAAGGATGTCTTAg > 1:5601089/1‑128 (MQ=255) aCGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGc < 1:6391114/128‑1 (MQ=255) gAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAg > 2:129322/1‑128 (MQ=255) aGGACGGATAATACGCTTTTAGAACGGCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGa < 2:6081545/128‑1 (MQ=255) ggACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGaa < 1:1678288/128‑1 (MQ=255) ggACGGATAATACGCTGTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGaa < 1:4693999/128‑1 (MQ=255) gACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGCCAGGATAAACCTCTTTTTAGTGGGAAAATACGAAGTTGAACATCAAAGCCACTCCACGACATATCGAATTCTAAGCCGaat > 2:4560252/1‑127 (MQ=255) aCGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACTGGAATACCCTCTTTTTAGTGGGAAAATACGATGGTGAACAACATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGt < 2:435397/128‑1 (MQ=255) cgtataataCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGCCACGCCAGGACCTCGGGCGTTCTTAGCAGAAGta > 2:4223193/4‑128 (MQ=255) ggATAATACGCTTTTAGAACGTCAGAGAGGAATTACACTTCAGACAGGAATAACCTCTTTTAAGTGGGAAAATACGAAGGTGAACCTCATAGCCCCGCCACGACATATGGATTTCTAAGCTGAAGaat > 2:390269/1‑128 (MQ=255) gATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGtata > 1:3154738/1‑128 (MQ=255) aataCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCg > 2:3793846/1‑128 (MQ=255) ataCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGGCACGCCAGGACATATGGATTTCTTAGCAGCAGTATATCGt > 1:4357386/1‑128 (MQ=255) ataCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGt < 1:1818851/128‑1 (MQ=255) ataCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGt > 1:2942778/1‑128 (MQ=255) taCGCTTTTAGAACGTCAGTGCGGAATTACTATTCAGAAAGGAATTACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATAATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGtt < 2:2757176/128‑1 (MQ=255) taCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGc > 1:3887132/1‑114 (MQ=255) taCGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGtt > 1:3798956/1‑128 (MQ=255) cGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATgg < 2:5701435/102‑1 (MQ=255) ttAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATc < 1:1018727/128‑1 (MQ=255) tAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCa > 2:2867986/1‑128 (MQ=255) aGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAg > 1:670951/1‑128 (MQ=255) gAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGt < 1:871089/128‑1 (MQ=255) gAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGAAATATGGATATCTTAGCAGAAGTAGATCGGTCAGTATCAGt > 1:2612542/1‑128 (MQ=255) gAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATAAGAAGGTGAACATCATAGACACGCCAGGACATATGCATTTCTTAGCAGAAGTATATAGTTAATTATcttt > 2:548703/1‑125 (MQ=255) gTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTa > 1:2707570/1‑128 (MQ=255) tCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAg < 1:5393055/128‑1 (MQ=255) cAGAGAGTAATTACAATTCAGACAGCACTAACCTATTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGa < 2:2294004/128‑1 (MQ=255) agagagGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGAt > 2:4697707/1‑128 (MQ=255) agagGAATTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTa < 1:1276769/114‑1 (MQ=255) actACCATGCAGACCGCACTACCCTCTTTTTAGGGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAAt < 1:3345285/126‑1 (MQ=255) aTTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAg < 2:4930670/88‑1 (MQ=255) aTTACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGttt < 2:3178202/115‑1 (MQ=255) aTTACAATTCAGACAGCTTTAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAAt < 2:3661808/128‑1 (MQ=255) tACAATTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTc > 2:1035113/1‑128 (MQ=255) aCAAATCAGACAGGAATAACCTCTATTAAGTGGGAAAATACGAAGGTGAACATCATAGACAAGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCt < 1:2492662/128‑1 (MQ=255) aTTCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTATAGATGGGGCAATTCTACt > 2:2192832/1‑128 (MQ=255) tCAGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGTGCAATTCTACTGa > 2:116886/1‑128 (MQ=255) aGACAGGAATCACCGCTTTTTCGTGGGAAAATACGAACGTGAACATCATAGCCACGCCCGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGAGGGGGCAATTCTACTGAtt < 1:3489958/128‑1 (MQ=255) aGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGCtt > 1:2384317/1‑128 (MQ=255) aGACAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGAtt > 2:144850/1‑128 (MQ=255) aCAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGTGCAATTCTACTGATTTc > 1:5480413/1‑128 (MQ=255) cAGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCt > 2:3093131/1‑128 (MQ=255) aGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTg < 2:328972/128‑1 (MQ=255) aGGAATAACCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTg < 1:3596709/128‑1 (MQ=255) aaTAACTTATTTTTAGAGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCaa < 2:2085531/128‑1 (MQ=255) aaCCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAg > 2:632530/1‑128 (MQ=255) aCCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATTTCGTTCATTATCAGTTTTAGATGGGGCAATTCGACTGTTGTCttcttaata > 1:1462700/1‑120 (MQ=255) aCCTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGa < 2:5808641/128‑1 (MQ=255) ccTCTTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCaaaa > 2:6573192/1‑125 (MQ=255) ctTTTTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGATGGc > 1:3708634/1‑128 (MQ=255) ttttTAGTTGGAAATTAGGTAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGATGGCg < 1:5811054/128‑1 (MQ=255) ttttTAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGATGGCg > 2:5583342/1‑128 (MQ=255) | GCTTATTATATAACAGTGGAGCGATTACAGAATTAGGAAGCGTGGACAAAGGTACAACGAGGACGGATAATACGCTTTTAGAACGTCAGAGAGGAATTACAATTCAGACAGGAATAACCTCTTTTCAGTGGGAAAATACGAAGGTGAACATCATAGACACGCCAGGACATATGGATTTCTTAGCAGAAGTATATCGTTCATTATCAGTTTTAGATGGGGCAATTCTACTGATTTCTGCAAAAGATGGCGT > CP016816/20480‑20729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |