Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.61.4% 1701.9 / inf 2948intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (550/550);  new base . (1282/469);  total (1845/1103)
Fisher's exact test for biased strand distribution p-value = 5.17e-36
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3610 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                |                                                                                                                                
ataataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATA‑TGCAAATATTTAAAAAATTAATTTGAACTAGTAAAAAATAGCt                                                                                                                                  >  1:8367503/1‑128 (MQ=255)
  aataatTAGTTTTATTAATTTTATGCAATTTTATTAATTATTAATAAAAAAAAACTATTATCTTTTTATTTATTTTTTTTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCttt                                                                                                                                <  2:6708673/128‑1 (MQ=255)
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttt                                                                                                                                >  2:8467313/1‑128 (MQ=255)
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtta                                                                                                                                >  2:7206386/1‑127 (MQ=255)
      tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                            >  2:8146484/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                          >  1:9551615/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                          >  1:341763/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAAAATCttattattttt                                                                                                                        >  2:334985/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                     >  1:5690693/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtttttttttttttt                                                                                                                     >  2:3516398/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttatttt                                                                                                                     >  2:5994470/1‑128 (MQ=255)
              cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTCGTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttattttttttt                                                                                                                    >  1:1272175/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                   >  2:3686030/1‑128 (MQ=255)
                 tAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttt                                                                                                                 >  2:2184899/1‑128 (MQ=255)
                  aaTTTATCTCACTTGTATGAAATATTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTTTA‑ATCAAATTTTTAAAAAATTTATTTGAACATGTAAAAAATAGCttttttttttttttttata                                                                                                                <  1:5882248/128‑4 (MQ=255)
                       tactcACTTGTATTAATAAGTAATAAAATAAAAAAATTATCTTTTTATATATTATTTTTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAAAAGCTTTTTTTTTTTTTTTTtataatgg                                                                                                           <  1:9096545/124‑5 (MQ=255)
                        tttcaattttATTAATTATTATTAAAATAAAAATATTTTTTTTTTATTTATTTTTTGTTTT‑TTTAAATTTTTTAAAAATTAATTTTAAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                         <  2:8623894/119‑1 (MQ=255)
                        ttccACTTTTTTGAATTATTCAGAAAAAAAAAAAATTATATTTTTATATTTTTTTTTATTATTTCAAATTATAAAA‑AATAAATTTTAAAATTTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                         <  2:4821807/125‑1 (MQ=255)
                        tagaaattGTTTTAATTATTATTAAAATAAAAATATTTTTTTTTATTTTATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                         <  2:5308992/122‑1 (MQ=255)
                          gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataattgaaa                                                                                                        >  2:4619842/1‑121 (MQ=255)
                          gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataatgtaaa                                                                                                        >  1:3064670/1‑121 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCTTTTTTTTTTTTTTTTTTaataatttaataa                                                                                                    >  1:5538792/1‑121 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttttttaatatttaaat                                                                                                    >  2:4247615/1‑116 (MQ=255)
                                tttttaaTTATTAATAAAAAAAAAATATTATTTTTTTTTATATTTTTTTTTTT‑TTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAA‑ATGTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑aa                                                                                                <  1:7928116/123‑1 (MQ=255)
                                 ttttaaTTTGTTATAAAATAAAAATTTTTTTTTTTTATTTTTTTTTTTTTTA‑TGAAAATTTTTAAAAAATTAATTTTAATTTTTAAAAAATTGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATAT‑AAAtt                                                                                             <  2:4381189/124‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAAttaataaaaaa                                                                                                 >  1:4105027/1‑118 (MQ=255)
                                   ttaaTTATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTATATAATGGAAATAT‑AAAtt                                                                                             <  1:4483621/126‑1 (MQ=255)
                                   tGAATTATTAAAAAACTAAAAATATTATGTTTTTTTATATTTTTTTTTTA‑TTCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAAtt                                                                                             <  2:7347233/128‑1 (MQ=255)
                                       ttattaATAAAATAAAAATATTTTCTTTTTATATATTTTTTGTTTA‑TTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAg                                                                                         <  1:175391/128‑1 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATAA‑AAAatttttt                                                                                        >  2:914044/1‑125 (MQ=255)
                                         attaataaATTAAAAATTTTATTTTTTTTTATTTTTTTTTTTTA‑TGAAAATTTTTAAAAAATAAATTTTAAAATTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTa                                                                                      <  2:7866011/126‑1 (MQ=255)
                                             aGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TATTTTAATTAA‑AAATTTTAGtttttt                                                                                   >  2:2339427/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTTAAATAT‑AAATTTTATTTAtttt                                                                                  >  1:3274566/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATAT‑AATTTTTATTTAttttt                                                                                 >  2:6954687/1‑127 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTATTTATTTttttgt                                                                             >  1:8209618/1‑128 (MQ=255)
                                                     aaactaTTATTTTTTTATATATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTa                                                                          <  1:630752/128‑1 (MQ=255)
                                                      aactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAATAAATGAAAAAT‑AAAATATATTTATTttgttttata                                                                          >  1:6136453/1‑123 (MQ=255)
                                                       actaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATAA‑AAATTTTATTTATTTTTTTTTATaa                                                                         >  2:1994023/1‑128 (MQ=255)
                                                       aattttatATTTTTATTTATTTTTTTTATA‑ATCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAg                                                                        <  2:2549232/124‑1 (MQ=255)
                                                        ctaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGTAAATAT‑AAATTTTAGTTATttttttttgaaatt                                                                       >  2:8010986/1‑120 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTATAAGTAta                                                                    >  2:4989144/1‑127 (MQ=255)
                                                          tttatATTTTTTGATTTTTTTTTTTTA‑TTCAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  2:769536/127‑1 (MQ=255)
                                                          attattTTTTTATTTATTTTTTTTTTT‑TTTAAATTTTTTAAAAATTTATTTTAAATTTTTAAAAATATTTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGt                                                                       <  1:7768504/128‑1 (MQ=255)
                                                           tttttttttttTATATTTTTTTTTTT‑TTATAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  1:760103/123‑1 (MQ=255)
                                                           ttatCTTTTTATATAATTTTTGTATA‑TGAAAATTTTTAAAAAATTAAATTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:8541786/128‑1 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TATTTTAAAAAT‑AAATTTTATTTATtttttttaatatataa                                                                     >  2:6363368/1‑118 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTATGTTTTTTTTTGTCTAAGTAt                                                                     >  1:7396459/1‑128 (MQ=255)
                                                           atatCTTTTTATATATTTTTTGTATA‑TTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTATATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  2:3188232/127‑1 (MQ=255)
                                                             atCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑T‑ATGGAAATAT‑AAATTTTATGTATTTTGTTGTATAATTaagaa                                                                  >  1:5999770/1‑124 (MQ=255)
                                                                tttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAAAAA‑AAATTTTAGTTTTTTTTTTTTATaatttaaaaaa                                                                >  2:6521509/1‑119 (MQ=255)
                                                                 ttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTAGTTATTATTTTGTCTAAGTATCTtaaa                                                               >  2:8793514/1‑128 (MQ=255)
                                                                     ttttatTTTTTTTTTA‑TGTAAATTTTTAAAAAATTATTTTGAATTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAACGTAAATAT‑AAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAg                                                         <  2:3040965/125‑1 (MQ=255)
                                                                           tttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATTGAAAAATAAAATTTTAGTTATTTTGTTGTCTAAGTTTATaaaaaataataat                                                      >  1:9406716/1‑121 (MQ=255)
                                                                              ttttata‑TGCAAATTTTTAAAAAAATAATTTTAAATTTTTAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  1:5136230/125‑1 (MQ=255)
                                                                               ttttta‑tTCAAATTTTTAAAAATTTTATTTGTAATTTTTAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                <  2:9315155/124‑1 (MQ=255)
                                                                               ttttattttcAAATTTTTTAAAATTTTATTTTTAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  2:1023724/119‑1 (MQ=255)
                                                                               ttttataaacAAATTTTTAAAAAATTAATTTTAATTTTTAAAAAATTG‑‑GTTTTTTTTTTTTTTTATATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  2:186704/119‑1 (MQ=255)
                                                                                ttttttttcAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                <  1:1134130/120‑1 (MQ=255)
                                                                                ttata‑TTCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                <  1:8902591/127‑1 (MQ=255)
                                                                                gTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATTAAAAGTaaaaa                                               >  1:1587165/1‑128 (MQ=255)
                                                                                gTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGATTTTTTTTTTTTTTTTTTATTAAT‑TAAATTT‑AAATTTTAATTATTTTTTTTTATAATTAAATAAAAAAATAAAAATTaaaa                                                >  1:4300332/1‑128 (MQ=255)
                                                                                 tata‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATTTAAATAT‑AAATATTATTTATTTTTTTTTATATTTATATAAAAAAATAAAAATAaaaaaaa                                             >  1:2351351/1‑127 (MQ=255)
                                                                                      tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTAATATTT‑AAATTTTATTTTTTTTGTTTTATAATTTAAAAAAAAAAAAAAAATTaaaaaaaa                                            >  1:3753112/1‑126 (MQ=255)
                                                                                         aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTATGTATTTTGTTTTAAAAGTTTATAAAAAAATATAAATGAAAAAATTTTg                                         >  1:1012470/1‑128 (MQ=255)
                                                                                         aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTAATAATTGAAATAA‑AAATTTTAGGTATTTTTATTTATAAGTAACTAAATAAAATCAATGTAAAAAAATTTGTTa                                      >  2:1635293/1‑128 (MQ=255)
                                                                                           aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATGTAAATAT‑AAATTTTAATTATTTTTTTTTATAATTATATAAAAAAAAATAATTGAAAAAATATttttt                                      >  1:6794239/1‑127 (MQ=255)
                                                                                           aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATTATGTAAATAT‑AAATTTAATGTATTTTTTTTTATAAATAAAAAAAAAAATATAAATAAAAAATTATTCTTaa                                     >  2:947454/1‑128 (MQ=255)
                                                                                           aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATAT‑AAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATATAAAGTAAAAAATATTTTTtaa                                    >  1:2552012/1‑128 (MQ=255)
                                                                                            ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTAGTTATTTTTTTTTATAATTATATAAAAAATAAAAAAGAAAAAAATATTTTTaa                                     >  1:4638326/1‑128 (MQ=255)
                                                                                               ttaaaaaaTTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGAAAATAA‑AAATTTTATTAATTTTGTTTTATAATTAAAAAAAAAAATAAAAATTAAAAAATATTTTTaaaat                                  >  2:1389539/3‑127 (MQ=255)
                                                                                               ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTATGTTTTTTGTTTTATAAGTATATAAAAAAATAGAAATTAAAAATTATTTTTAAAAGt                                 >  1:1418841/3‑128 (MQ=255)
                                                                                                 aaaaaaTTTATTTTAAATTTTAAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTa                                <  1:5313032/128‑1 (MQ=255)
                                                                                                    aaattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAATTTT‑AAATTTTAGTTATTTTTTTTTATAATTA‑AAAAAAAAAAATAAATGTAAAAAAATTTTTaaaatttaaaaa                           >  1:4965843/2‑120 (MQ=255)
                                                                                                    aaattaaatTTAAATTTTAAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                            <  1:9272190/127‑1 (MQ=255)
                                                                                                     aattaattTGAACTTTTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                         <  2:2707340/128‑1 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTATGTATTTTGTTGTATAATTATCTAAAAAAATTAAAAGAAAAAAATATTTTTAAAAttattaat                           >  1:1884931/1‑126 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATAA‑AAATTTTAGGTATTTTTTTGACTAAGTATATAAAAAAATAGAAAGGAAAAAATATTTTTAAAATAAATACTaa                         >  2:7523193/1‑128 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATGGAAATAT‑AAATTTTAGGTTTTTTGTTTTCTAAGTATAAAAAAAAAAATAATGAAAAAAATTTTTTTAAAAGTAATACt                           >  1:6493108/1‑128 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAAAAT‑AAATTTTAGTTATTTTTTTGTATAATAATGAAAAAAAATTAAATGAAAAAAATATTATTAAAAttattaat                           >  2:5802324/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTAATAT‑AT‑GAAATAT‑AAATTTTATTTATTTTTTTTTATAATTATAAAAAAAAATATAATTGAAAAAAAATTTTAAAAAGAAATaaaaa                         >  2:3832802/1‑124 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTAGTTTTTTTTTTTTATATTTTTATAAAAAAATATAAATTAAAAATTATTTTTAAAATTAataata                          >  1:2035959/1‑128 (MQ=255)
                                                                                                       ttagttTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATTA‑TATTTTTTGTTTTTTTTTTGTATAATTATCTAAAAAAATAAAAATGAAAAAATATTTTTAAAATTAATACt                           >  1:8078013/1‑128 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTTTATATTTATCTAAAAAAATAGAATGGAAAAATATTTTTTAAAATtaataataa                         >  2:8962552/1‑128 (MQ=255)
                                                                                                        taattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATAA‑AAATTTTAGTTATTTTTTTTTATAATTAAAAAAAAAAATA‑AAATGAAAAAAAATTTTTaaaaaaaaaaaaaaa                        >  2:5172507/1‑117 (MQ=255)
                                                                                                          attTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAT‑AAATTTTAGTTATTTTGTTTTCTATTTTTATAAAAAAATATAAATTAATAAATTTTTTTTAAAGTTAtaataata                       >  1:3882664/1‑126 (MQ=255)
                                                                                                          attTGAAATTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                      <  2:1174388/128‑1 (MQ=255)
                                                                                                              gAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATTGTAATAT‑AAATTTTTGGTATTTTTTTTTGTATTTTTATTAAAAAATATAAAGGAAAAAATTTTTTTTAAAGTTATAATTAAtttatta                 >  1:2193081/1‑127 (MQ=255)
                                                                                                                aCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATATTGTAAATAT‑AAATTTTAGTTATTTTTTTTTTTATTTATATAAAAAAATATAAAGTAAATAATATTTTTAAATTTAATAATTAAattttt                  >  1:7021754/1‑128 (MQ=255)
                                                                                                                 tttttAAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  2:5538792/124‑1 (MQ=255)
                                                                                                                 attGTTAAAAATATC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTaa               <  2:828765/127‑1 (MQ=255)
                                                                                                                  ttGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATAT‑AAATTTTAGGTTTTTTTTTGTATAAGTATGTAAAAAAATAGAAATAAAAAAATATTTTTAAATTTAATAATAAAATTATTTaa               >  1:2771941/1‑128 (MQ=255)
                                                                                                                    ttttaataatattttttttttttttttttttATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt              <  1:3610560/116‑1 (MQ=255)
                                                                                                                    ttttaaaaatattttttttttttttttttttATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt              <  1:4825498/116‑1 (MQ=255)
                                                                                                                    gTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAAAAA‑AAATTTTAGTTTTTTTTTTTTATAATTATATAAAAAAATTAAATGTAAAAATTATTTTTTAAATAATTAATAAAATTATTTAAttt            >  2:6153511/1‑126 (MQ=255)
                                                                                                                     ttttaaaaaattttttttttttttttttttATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg             <  1:6661328/117‑1 (MQ=255)
                                                                                                                     tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTTTTTTGTTGTATATTTATATAAAAAAATATAAAGGAAAAAATATTTTTAAATTTTATAATAAAATTTTTTAAtttt           >  2:287234/1‑128 (MQ=255)
                                                                                                                       tttaaaatttttttttttttttttttttATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt           <  1:2923432/119‑1 (MQ=255)
                                                                                                                         aaaTAGC‑TTTTTTTTTTTTTTTTTTATTTTGGAAATAT‑AAATTTTTGGTATTTTGTTGTTTAATTATATAAAAAAATAAAAAGAAAAAAATATTTTTAAAATTAATAATAAAATTATTTATTGataat        >  1:7209029/1‑128 (MQ=255)
                                                                                                                          aaTAGC‑TTTTTTTTTTTTTTTTTTAAAATTGAAATAA‑AAATTTTAGTTTTTTTTTTTTAAAATTAAATAAAAAAAAATAAAGAAAAAAAATTTTTTAAAATTAATAAAAAAATTATTTATTAttaaat       >  2:4013642/1‑126 (MQ=255)
                                                                                                                                tttttttttttttttttttATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTATAATTATATAAAAAAATAGAAAGGAAAAAATTTTGTTAAAAATAATACTAAAATTTTTTAATTTTAATTAAAAc  >  1:8711630/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                                
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATAT‑AAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑